Wall clock time and date at job start Sat Apr 11 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86798 * 119.99891 * 2 1 4 4 H 1.48494 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47356 * 300.00312 * 3 2 1 6 6 H 1.48505 * 109.46958 * 59.99769 * 3 2 1 7 7 C 1.38798 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99712 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99996 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47313 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99957 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00262 * 180.02562 * 11 10 9 14 14 C 1.47023 * 125.64827 * 0.03936 * 13 11 10 15 15 C 1.54321 * 107.27226 * 181.02002 * 14 13 11 16 16 C 1.55160 * 102.94054 * 22.19926 * 15 14 13 17 17 H 1.08991 * 111.04068 * 82.58404 * 16 15 14 18 18 C 1.53003 * 111.00172 * 206.42055 * 16 15 14 19 19 C 1.53001 * 109.47182 * 178.64416 * 18 16 15 20 20 N 1.46493 * 109.47084 * 179.97438 * 19 18 16 21 21 C 1.34784 * 119.99864 * 180.02562 * 20 19 18 22 22 O 1.21283 * 119.99649 * 359.72839 * 21 20 19 23 23 C 1.50694 * 119.99988 * 179.72721 * 21 20 19 24 24 C 1.53777 * 113.61568 * 277.49596 * 23 21 20 25 25 C 1.53775 * 87.08539 * 220.02224 * 24 23 21 26 26 C 1.53781 * 87.08192 * 25.43251 * 25 24 23 27 27 C 1.47422 * 125.65140 * 179.97438 * 13 11 10 28 28 H 0.96998 * 119.99742 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47199 * 60.00462 * 10 9 7 30 30 H 1.09002 * 109.47554 * 300.00231 * 10 9 7 31 31 H 1.08999 * 109.88378 * 300.44267 * 14 13 11 32 32 H 1.09008 * 109.87896 * 61.45354 * 14 13 11 33 33 H 1.08997 * 110.72420 * 263.83196 * 15 14 13 34 34 H 1.09005 * 110.72046 * 140.55749 * 15 14 13 35 35 H 1.09007 * 109.47291 * 58.64924 * 18 16 15 36 36 H 1.08993 * 109.47243 * 298.64833 * 18 16 15 37 37 H 1.09007 * 109.46593 * 60.00081 * 19 18 16 38 38 H 1.09006 * 109.47216 * 300.00539 * 19 18 16 39 39 H 0.97000 * 120.00740 * 359.72857 * 20 19 18 40 40 H 1.09005 * 112.85131 * 48.80593 * 23 21 20 41 41 H 1.09004 * 113.61546 * 334.57149 * 24 23 21 42 42 H 1.09003 * 113.61384 * 105.47433 * 24 23 21 43 43 H 1.09005 * 113.61565 * 270.88849 * 25 24 23 44 44 H 1.08999 * 113.61910 * 139.98310 * 25 24 23 45 45 H 1.09001 * 113.61337 * 220.02490 * 26 25 24 46 46 H 1.08993 * 113.61593 * 89.11741 * 26 25 24 47 47 H 1.09000 * 110.36577 * 37.06955 * 27 13 11 48 48 H 1.09003 * 110.37109 * 274.74720 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 4.3112 -6.2451 0.0011 15 6 4.8666 -7.6846 -0.0253 16 6 3.6854 -8.5021 -0.6119 17 1 3.6717 -8.4441 -1.7001 18 6 3.7401 -9.9577 -0.1438 19 6 2.5435 -10.7221 -0.7139 20 7 2.5962 -12.1159 -0.2662 21 6 1.6376 -12.9831 -0.6481 22 8 0.7289 -12.6081 -1.3584 23 6 1.6951 -14.4184 -0.1926 24 6 2.6227 -15.2989 -1.0465 25 6 1.5577 -16.4016 -0.9253 26 6 0.5305 -15.2771 -0.7134 27 6 2.4657 -7.7679 -0.0008 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7314 0.8895 30 1 3.1246 -3.7313 -0.8905 31 1 4.6475 -5.7016 -0.8818 32 1 4.6472 -5.7321 0.9024 33 1 5.1076 -8.0236 0.9822 34 1 5.7400 -7.7491 -0.6743 35 1 3.7068 -9.9907 0.9453 36 1 4.6646 -10.4172 -0.4930 37 1 2.5768 -10.6891 -1.8029 38 1 1.6189 -10.2625 -0.3646 39 1 3.3232 -12.4159 0.3016 40 1 1.8639 -14.5157 0.8799 41 1 2.7578 -14.9324 -2.0641 42 1 3.5643 -15.5455 -0.5557 43 1 1.6898 -17.0423 -0.0533 44 1 1.4052 -16.9646 -1.8461 45 1 -0.2170 -15.5059 0.0462 46 1 0.0936 -14.9045 -1.6399 47 1 1.5805 -7.9252 -0.6170 48 1 2.2862 -8.1128 1.0176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059197878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:03 Heat of formation + Delta-G solvation = -66.410970 kcal Electronic energy + Delta-G solvation = -26048.824013 eV Core-core repulsion = 22229.901735 eV Total energy + Delta-G solvation = -3818.922278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64079 -39.88731 -38.08804 -37.45976 -35.53514 -33.05235 -32.41997 -30.38484 -29.58699 -28.03334 -26.52369 -26.08214 -25.46957 -24.08277 -22.45265 -21.40701 -20.58945 -19.71730 -19.32118 -17.84563 -17.71620 -16.65268 -16.50813 -16.26689 -16.07328 -15.57158 -15.04061 -14.80025 -14.77864 -14.48309 -14.13284 -13.88789 -13.56481 -13.36577 -13.14939 -12.93613 -12.83316 -12.63674 -12.54402 -12.46123 -12.31660 -11.85031 -11.75192 -11.64470 -11.37785 -11.06766 -11.03552 -11.01655 -10.96171 -10.95206 -10.88388 -10.74707 -9.99868 -9.79716 -9.42489 -9.38884 -9.06613 -8.49083 -8.21596 -6.49232 -6.20851 -3.91455 2.29789 2.79259 2.94108 3.08169 3.21958 3.26813 3.31733 3.63139 4.01611 4.08888 4.09383 4.21114 4.22767 4.32535 4.35517 4.41078 4.63347 4.79803 4.81645 5.01743 5.05091 5.08761 5.11492 5.14304 5.17260 5.21010 5.29272 5.34440 5.38691 5.47587 5.50529 5.52885 5.59855 5.63483 5.64640 5.66555 5.73756 5.83093 5.92786 5.95756 5.99418 6.08188 6.14921 6.44174 7.12812 7.60457 7.68767 7.90306 8.36196 8.57676 9.24389 10.86675 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.001595 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.853568 B =17549.183306 C =18311.779613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.547 3.453 12 O -0.515 6.515 13 N -0.627 5.627 14 C 0.101 3.899 15 C -0.124 4.124 16 C -0.100 4.100 17 H 0.090 0.910 18 C -0.117 4.117 19 C 0.113 3.887 20 N -0.731 5.731 21 C 0.519 3.481 22 O -0.536 6.536 23 C -0.140 4.140 24 C -0.123 4.123 25 C -0.143 4.143 26 C -0.119 4.119 27 C 0.110 3.890 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.400 0.600 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.702 -31.505 0.804 34.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.389 6.389 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.162 4.162 16 C -0.119 4.119 17 H 0.108 0.892 18 C -0.155 4.155 19 C -0.010 4.010 20 N -0.382 5.382 21 C 0.305 3.695 22 O -0.412 6.412 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.180 4.180 26 C -0.157 4.157 27 C -0.013 4.013 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.234 0.766 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.114 0.886 47 H 0.097 0.903 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.021 -31.309 0.285 33.193 hybrid contribution 2.454 1.288 0.379 2.797 sum 13.475 -30.021 0.664 32.913 Atomic orbital electron populations 1.70035 1.05952 1.27338 1.46925 1.24997 0.95025 0.99023 0.94548 0.86112 0.79563 0.81880 0.77903 1.19626 1.20555 1.20568 1.22900 0.94920 0.91606 1.58851 0.90893 1.85423 1.04994 0.96363 1.96701 1.23503 1.06416 0.94997 1.04754 1.20037 0.85696 0.85496 0.75182 1.90716 1.14944 1.85132 1.48113 1.48497 1.06496 1.05701 1.75801 1.21989 0.80609 0.97434 1.02198 1.22680 0.97699 0.93867 1.01956 1.22319 0.95278 0.93215 1.01116 0.89208 1.21717 0.98052 0.94269 1.01476 1.21459 0.99240 0.80467 0.99872 1.46040 1.28251 1.10540 1.53415 1.20568 0.81452 0.87390 0.80061 1.90729 1.34399 1.78954 1.37104 1.22822 1.00863 0.90877 1.01575 1.22822 0.97310 0.95819 1.00158 1.22837 0.96305 0.96390 1.02484 1.22816 0.95628 0.94645 1.02588 1.22244 0.97620 0.80668 1.00736 0.92233 0.89339 0.89326 0.91277 0.91266 0.90398 0.89910 0.90746 0.90664 0.91300 0.90918 0.76638 0.86951 0.89669 0.90667 0.89840 0.90903 0.90927 0.88627 0.90305 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.41 13.22 55.49 0.73 -25.68 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 10 C -0.15 -3.07 5.35 36.00 0.19 -2.88 16 11 C 0.55 10.90 7.87 -10.99 -0.09 10.82 16 12 O -0.52 -12.38 16.12 5.56 0.09 -12.29 16 13 N -0.63 -9.18 3.33 -170.51 -0.57 -9.75 16 14 C 0.10 1.06 6.49 -3.06 -0.02 1.04 16 15 C -0.12 -0.85 6.42 -24.90 -0.16 -1.01 16 16 C -0.10 -0.76 3.07 -88.46 -0.27 -1.03 16 17 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 18 C -0.12 -0.63 4.84 -26.73 -0.13 -0.76 16 19 C 0.11 0.87 5.52 -4.04 -0.02 0.85 16 20 N -0.73 -4.82 5.56 -60.29 -0.33 -5.16 16 21 C 0.52 4.72 7.35 -10.98 -0.08 4.64 16 22 O -0.54 -7.42 15.90 5.56 0.09 -7.33 16 23 C -0.14 -0.82 4.15 -90.96 -0.38 -1.20 16 24 C -0.12 -0.56 7.63 -25.92 -0.20 -0.76 16 25 C -0.14 -0.64 8.08 -25.92 -0.21 -0.85 16 26 C -0.12 -0.78 7.41 -25.92 -0.19 -0.97 16 27 C 0.11 1.31 5.57 -2.52 -0.01 1.29 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 30 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 33 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.71 7.46 -51.93 -0.39 0.33 16 39 H 0.40 1.39 8.47 -40.82 -0.35 1.05 16 40 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 42 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.10 0.82 7.43 -51.93 -0.39 0.43 16 47 H 0.08 1.08 7.96 -51.93 -0.41 0.66 16 48 H 0.06 0.74 8.00 -51.93 -0.42 0.32 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -37.84 405.83 -10.73 -48.57 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -8.25 Total: -3.15 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.37 Total: -3.92 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: -0.17 Total: -40.59 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.18 Total: -19.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.84 -10.73 -48.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.845 kcal (2) G-P(sol) polarization free energy of solvation -37.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds