Wall clock time and date at job start Sat Apr 11 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31639 * 1 3 3 Si 1.86798 * 119.99891 * 2 1 4 4 H 1.48494 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47356 * 300.00312 * 3 2 1 6 6 H 1.48505 * 109.46958 * 59.99769 * 3 2 1 7 7 C 1.38798 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99712 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00224 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99996 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47313 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99957 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00262 * 180.02562 * 11 10 9 14 14 C 1.47023 * 125.64827 * 0.03936 * 13 11 10 15 15 C 1.54321 * 107.27226 * 181.02002 * 14 13 11 16 16 C 1.55160 * 102.94054 * 22.19926 * 15 14 13 17 17 H 1.08991 * 111.04068 * 82.58404 * 16 15 14 18 18 C 1.53003 * 111.00172 * 206.42055 * 16 15 14 19 19 C 1.53001 * 109.47182 * 178.64416 * 18 16 15 20 20 N 1.46493 * 109.47084 * 179.97438 * 19 18 16 21 21 C 1.34784 * 119.99864 * 180.02562 * 20 19 18 22 22 O 1.21283 * 119.99649 * 359.72839 * 21 20 19 23 23 C 1.50694 * 119.99988 * 179.72721 * 21 20 19 24 24 C 1.53777 * 113.61568 * 277.49596 * 23 21 20 25 25 C 1.53775 * 87.08539 * 220.02224 * 24 23 21 26 26 C 1.53781 * 87.08192 * 25.43251 * 25 24 23 27 27 C 1.47422 * 125.65140 * 179.97438 * 13 11 10 28 28 H 0.96998 * 119.99742 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47199 * 60.00462 * 10 9 7 30 30 H 1.09002 * 109.47554 * 300.00231 * 10 9 7 31 31 H 1.08999 * 109.88378 * 300.44267 * 14 13 11 32 32 H 1.09008 * 109.87896 * 61.45354 * 14 13 11 33 33 H 1.08997 * 110.72420 * 263.83196 * 15 14 13 34 34 H 1.09005 * 110.72046 * 140.55749 * 15 14 13 35 35 H 1.09007 * 109.47291 * 58.64924 * 18 16 15 36 36 H 1.08993 * 109.47243 * 298.64833 * 18 16 15 37 37 H 1.09007 * 109.46593 * 60.00081 * 19 18 16 38 38 H 1.09006 * 109.47216 * 300.00539 * 19 18 16 39 39 H 0.97000 * 120.00740 * 359.72857 * 20 19 18 40 40 H 1.09005 * 112.85131 * 48.80593 * 23 21 20 41 41 H 1.09004 * 113.61546 * 334.57149 * 24 23 21 42 42 H 1.09003 * 113.61384 * 105.47433 * 24 23 21 43 43 H 1.09005 * 113.61565 * 270.88849 * 25 24 23 44 44 H 1.08999 * 113.61910 * 139.98310 * 25 24 23 45 45 H 1.09001 * 113.61337 * 220.02490 * 26 25 24 46 46 H 1.08993 * 113.61593 * 89.11741 * 26 25 24 47 47 H 1.09000 * 110.36577 * 37.06955 * 27 13 11 48 48 H 1.09003 * 110.37109 * 274.74720 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8442 -6.3431 -0.0008 14 6 4.3112 -6.2451 0.0011 15 6 4.8666 -7.6846 -0.0253 16 6 3.6854 -8.5021 -0.6119 17 1 3.6717 -8.4441 -1.7001 18 6 3.7401 -9.9577 -0.1438 19 6 2.5435 -10.7221 -0.7139 20 7 2.5962 -12.1159 -0.2662 21 6 1.6376 -12.9831 -0.6481 22 8 0.7289 -12.6081 -1.3584 23 6 1.6951 -14.4184 -0.1926 24 6 2.6227 -15.2989 -1.0465 25 6 1.5577 -16.4016 -0.9253 26 6 0.5305 -15.2771 -0.7134 27 6 2.4657 -7.7679 -0.0008 28 1 -0.4850 0.8400 0.0004 29 1 3.1245 -3.7314 0.8895 30 1 3.1246 -3.7313 -0.8905 31 1 4.6475 -5.7016 -0.8818 32 1 4.6472 -5.7321 0.9024 33 1 5.1076 -8.0236 0.9822 34 1 5.7400 -7.7491 -0.6743 35 1 3.7068 -9.9907 0.9453 36 1 4.6646 -10.4172 -0.4930 37 1 2.5768 -10.6891 -1.8029 38 1 1.6189 -10.2625 -0.3646 39 1 3.3232 -12.4159 0.3016 40 1 1.8639 -14.5157 0.8799 41 1 2.7578 -14.9324 -2.0641 42 1 3.5643 -15.5455 -0.5557 43 1 1.6898 -17.0423 -0.0533 44 1 1.4052 -16.9646 -1.8461 45 1 -0.2170 -15.5059 0.0462 46 1 0.0936 -14.9045 -1.6399 47 1 1.5805 -7.9252 -0.6170 48 1 2.2862 -8.1128 1.0176 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059197878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:02 Heat of formation + Delta-G solvation = -92.811747 kcal Electronic energy + Delta-G solvation = -26049.968836 eV Core-core repulsion = 22229.901735 eV Total energy + Delta-G solvation = -3820.067102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31317 -41.03690 -38.96372 -38.35636 -36.36414 -34.60740 -34.00740 -31.40389 -30.82633 -28.89049 -27.73205 -27.12859 -26.51625 -24.99658 -23.18867 -22.06161 -21.23952 -20.73190 -20.21484 -19.58668 -18.44437 -18.08836 -17.48073 -17.02499 -16.90491 -16.79199 -16.51195 -16.17619 -15.76222 -15.54612 -15.33209 -15.01115 -14.57905 -14.40855 -14.06138 -13.93278 -13.79110 -13.58909 -13.40327 -13.29633 -13.17683 -13.12178 -12.93716 -12.92314 -12.61707 -12.38530 -12.15599 -12.03899 -11.74093 -11.64984 -11.56076 -11.43981 -11.28294 -11.17562 -11.01236 -10.70150 -10.30622 -10.10950 -9.71812 -8.71386 -8.36523 -6.16112 1.22260 1.40877 1.43853 1.52189 1.56325 1.60611 2.07425 2.23178 2.25435 2.97741 3.20418 3.42430 3.53918 3.62188 3.66537 3.79577 3.83752 3.85835 3.92362 4.11231 4.18559 4.25639 4.27156 4.33313 4.39723 4.44167 4.50385 4.66194 4.71523 4.74624 4.79968 4.86766 4.87406 4.91695 5.03723 5.06372 5.07876 5.09539 5.17500 5.20087 5.33615 5.39738 5.43195 5.44571 5.54083 6.18052 6.36960 6.58197 7.04338 7.08079 7.28699 8.73238 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.001595 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.853568 B =17549.183306 C =18311.779613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.002 2.998 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.117 4.117 11 C 0.541 3.459 12 O -0.572 6.572 13 N -0.619 5.619 14 C 0.085 3.915 15 C -0.108 4.108 16 C -0.088 4.088 17 H 0.087 0.913 18 C -0.101 4.101 19 C 0.112 3.888 20 N -0.714 5.714 21 C 0.510 3.490 22 O -0.595 6.595 23 C -0.135 4.135 24 C -0.116 4.116 25 C -0.133 4.133 26 C -0.134 4.134 27 C 0.101 3.899 28 H 0.271 0.729 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.419 0.581 40 H 0.142 0.858 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.542 -32.925 1.937 37.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.268 4.268 11 C 0.330 3.670 12 O -0.451 6.451 13 N -0.353 5.353 14 C -0.037 4.037 15 C -0.146 4.146 16 C -0.108 4.108 17 H 0.105 0.895 18 C -0.139 4.139 19 C -0.012 4.012 20 N -0.366 5.366 21 C 0.298 3.702 22 O -0.476 6.476 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.170 4.170 26 C -0.172 4.172 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.257 0.743 40 H 0.159 0.841 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.967 -32.784 1.445 36.494 hybrid contribution 0.962 1.604 0.020 1.870 sum 16.929 -31.180 1.464 35.510 Atomic orbital electron populations 1.70205 1.08080 1.28611 1.47984 1.26175 0.95981 1.03425 0.93614 0.84861 0.78628 0.76056 0.78108 1.17837 1.19907 1.19851 1.23222 0.95341 0.91741 1.58974 0.89801 1.85647 1.10708 0.99483 1.97044 1.23286 1.03313 0.93867 1.06381 1.19855 0.85486 0.86226 0.75460 1.90689 1.17319 1.85862 1.51240 1.48492 1.08187 1.05659 1.72984 1.22437 0.77582 1.00640 1.02991 1.22706 0.97548 0.90461 1.03838 1.22276 0.93346 0.94311 1.00843 0.89461 1.21640 0.97914 0.92084 1.02230 1.21379 0.99358 0.81287 0.99160 1.45907 1.28150 1.09751 1.52766 1.21265 0.80831 0.88904 0.79158 1.90707 1.36829 1.80148 1.39887 1.22946 1.00954 0.88399 1.03276 1.22798 0.98272 0.94926 0.99330 1.22841 0.94924 0.95946 1.03339 1.22843 0.96582 0.96331 1.01443 1.22502 0.98949 0.79571 1.01082 0.91958 0.87430 0.87576 0.90667 0.90314 0.88294 0.86946 0.89192 0.87400 0.92802 0.93941 0.74296 0.84072 0.91143 0.87898 0.87795 0.90997 0.90671 0.91673 0.93299 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.02 13.22 21.65 0.29 -56.74 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.99 29.55 68.60 2.03 46.02 16 4 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.72 9.50 67.95 0.65 -31.07 16 8 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 9 S -0.16 -9.01 20.57 -56.49 -1.16 -10.17 16 10 C -0.12 -4.95 5.35 71.24 0.38 -4.57 16 11 C 0.54 22.12 7.87 87.66 0.69 22.81 16 12 O -0.57 -29.18 16.12 -3.03 -0.05 -29.23 16 13 N -0.62 -17.72 3.33 -811.76 -2.70 -20.42 16 14 C 0.09 1.52 6.49 86.73 0.56 2.09 16 15 C -0.11 -0.98 6.42 31.78 0.20 -0.77 16 16 C -0.09 -1.11 3.07 -9.39 -0.03 -1.14 16 17 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 18 C -0.10 -0.74 4.84 30.60 0.15 -0.59 16 19 C 0.11 1.66 5.52 86.38 0.48 2.14 16 20 N -0.71 -8.38 5.56 -463.05 -2.57 -10.96 16 21 C 0.51 9.29 7.35 87.65 0.64 9.93 16 22 O -0.60 -17.75 15.90 -3.04 -0.05 -17.80 16 23 C -0.13 -1.40 4.15 -11.01 -0.05 -1.44 16 24 C -0.12 -0.80 7.63 31.12 0.24 -0.56 16 25 C -0.13 -0.97 8.08 31.12 0.25 -0.72 16 26 C -0.13 -1.77 7.41 31.12 0.23 -1.54 16 27 C 0.10 2.38 5.57 86.86 0.48 2.86 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 30 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.31 8.14 -2.38 -0.02 1.30 16 33 H 0.10 0.58 8.04 -2.39 -0.02 0.56 16 34 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.09 0.47 8.10 -2.38 -0.02 0.45 16 36 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.04 0.89 7.46 -2.38 -0.02 0.88 16 39 H 0.42 1.52 8.47 -92.71 -0.79 0.74 16 40 H 0.14 0.66 8.14 -2.38 -0.02 0.64 16 41 H 0.07 0.71 8.09 -2.38 -0.02 0.69 16 42 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 1.26 7.43 -2.39 -0.02 1.24 16 47 H 0.05 1.44 7.96 -2.39 -0.02 1.42 16 48 H 0.07 1.60 8.00 -2.39 -0.02 1.58 16 Total: -1.00 -90.49 405.83 1.29 -89.20 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.16 Total: 11.48 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.35 Total: -1.38 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -4.99 Total: -88.12 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -0.10 Total: -47.03 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.16 Total: -10.17 kcal Total: -90.49 1.29 -89.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.613 kcal (2) G-P(sol) polarization free energy of solvation -90.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds