Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 120.00488 * 2 1 4 4 H 1.48496 * 109.47522 * 269.99882 * 3 2 1 5 5 H 1.48500 * 109.46927 * 30.00179 * 3 2 1 6 6 H 1.48505 * 109.47170 * 149.99684 * 3 2 1 7 7 C 1.38806 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99765 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00083 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47316 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99743 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99779 * 179.97438 * 11 10 9 14 14 C 1.47012 * 125.65042 * 359.95617 * 13 11 10 15 15 C 1.54322 * 107.27369 * 178.97703 * 14 13 11 16 16 C 1.55164 * 102.94252 * 337.80931 * 15 14 13 17 17 H 1.09004 * 111.03384 * 277.41446 * 16 15 14 18 18 C 1.52995 * 111.00601 * 153.57517 * 16 15 14 19 19 C 1.53000 * 109.47006 * 181.35334 * 18 16 15 20 20 N 1.46503 * 109.47169 * 180.02562 * 19 18 16 21 21 C 1.34775 * 120.00029 * 180.02562 * 20 19 18 22 22 O 1.21281 * 120.00073 * 359.97438 * 21 20 19 23 23 C 1.50701 * 119.99783 * 179.97438 * 21 20 19 24 24 C 1.53785 * 113.69000 * 80.93572 * 23 21 20 25 25 C 1.53777 * 87.08241 * 89.12299 * 24 23 21 26 26 C 1.53781 * 113.61206 * 178.47107 * 23 21 20 27 27 C 1.47421 * 125.64329 * 180.02562 * 13 11 10 28 28 H 0.96999 * 119.99514 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47272 * 60.00018 * 10 9 7 30 30 H 1.09000 * 109.46578 * 300.00384 * 10 9 7 31 31 H 1.08998 * 109.88419 * 298.39711 * 14 13 11 32 32 H 1.09007 * 109.88076 * 59.40697 * 14 13 11 33 33 H 1.09000 * 110.72538 * 219.45023 * 15 14 13 34 34 H 1.09000 * 110.72129 * 96.17141 * 15 14 13 35 35 H 1.08995 * 109.47152 * 61.34815 * 18 16 15 36 36 H 1.09005 * 109.46758 * 301.35144 * 18 16 15 37 37 H 1.08995 * 109.47589 * 59.99748 * 19 18 16 38 38 H 1.09005 * 109.47207 * 299.99535 * 19 18 16 39 39 H 0.97003 * 119.99937 * 359.97438 * 20 19 18 40 40 H 1.09002 * 112.85178 * 309.66413 * 23 21 20 41 41 H 1.08999 * 113.61060 * 203.67722 * 24 23 21 42 42 H 1.08997 * 113.61198 * 334.57515 * 24 23 21 43 43 H 1.08994 * 113.61814 * 270.88533 * 25 24 23 44 44 H 1.08999 * 113.60923 * 139.97748 * 25 24 23 45 45 H 1.09000 * 113.61578 * 25.34539 * 26 23 21 46 46 H 1.09001 * 113.61682 * 156.17118 * 26 23 21 47 47 H 1.09004 * 110.36668 * 85.25615 * 27 13 11 48 48 H 1.09003 * 110.37144 * 322.93029 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1291 -2.7279 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9870 -5.3028 -0.0012 12 8 0.7907 -5.5022 -0.0011 13 7 2.8438 -6.3432 -0.0018 14 6 4.3106 -6.2453 -0.0029 15 6 4.8660 -7.6849 0.0230 16 6 3.6844 -8.5028 0.6083 17 1 3.6701 -8.4455 1.6967 18 6 3.7392 -9.9580 0.1393 19 6 2.5423 -10.7226 0.7082 20 7 2.5951 -12.1163 0.2596 21 6 1.6358 -12.9833 0.6396 22 8 0.7290 -12.6099 1.3533 23 6 1.6898 -14.4168 0.1777 24 6 2.6461 -15.2956 1.0010 25 6 1.4552 -15.5842 1.9301 26 6 0.5452 -15.2845 0.7270 27 6 2.4650 -7.7680 -0.0030 28 1 -0.4849 0.8401 0.0004 29 1 3.1242 -3.7316 0.8894 30 1 3.1242 -3.7314 -0.8905 31 1 4.6474 -5.7342 -0.9048 32 1 4.6464 -5.7001 0.8793 33 1 5.7390 -7.7500 0.6725 34 1 5.1076 -8.0233 -0.9846 35 1 4.6636 -10.4178 0.4887 36 1 3.7066 -9.9902 -0.9498 37 1 1.6180 -10.2628 0.3587 38 1 2.5750 -10.6905 1.7973 39 1 3.3201 -12.4149 -0.3115 40 1 1.8297 -14.5094 -0.8994 41 1 3.0036 -16.1740 0.4636 42 1 3.4489 -14.7362 1.4812 43 1 1.3528 -14.8670 2.7444 44 1 1.4057 -16.6194 2.2677 45 1 -0.3480 -14.7161 0.9862 46 1 0.3274 -16.1591 0.1141 47 1 2.2861 -8.1121 -1.0217 48 1 1.5795 -7.9257 0.6126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059197879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -64.642657 kcal Electronic energy + Delta-G solvation = -26146.099733 eV Core-core repulsion = 22327.254135 eV Total energy + Delta-G solvation = -3818.845598 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79448 -39.89834 -38.00003 -37.38918 -35.53465 -33.06701 -32.42098 -30.38034 -29.58839 -27.93999 -26.45731 -26.05323 -25.46782 -24.12868 -22.55956 -21.71827 -20.70390 -19.45995 -19.32563 -17.71909 -17.41123 -16.66679 -16.48211 -16.33837 -16.15394 -15.49897 -15.10149 -14.94005 -14.79581 -14.42545 -14.07751 -13.89014 -13.68032 -13.49060 -13.17687 -12.92561 -12.82200 -12.63691 -12.55006 -12.47894 -12.32460 -11.85764 -11.74799 -11.41492 -11.38156 -11.05999 -11.02703 -10.97571 -10.95465 -10.86521 -10.84761 -10.75227 -10.09336 -9.80716 -9.44348 -9.39311 -9.05844 -8.49368 -8.22103 -6.49297 -6.20683 -3.91381 2.26497 2.72961 2.93526 3.07916 3.22775 3.26615 3.30929 3.62892 4.04037 4.08345 4.12360 4.21270 4.22943 4.35576 4.38636 4.40674 4.66081 4.78987 4.81292 5.01201 5.08118 5.10499 5.12200 5.14380 5.19240 5.20581 5.26699 5.33683 5.44960 5.47157 5.52610 5.59946 5.63527 5.64135 5.64824 5.68003 5.73401 5.82642 5.93158 5.95548 5.98909 6.04859 6.14806 6.43900 7.10366 7.60162 7.68460 7.87874 8.35994 8.57425 9.24379 10.86780 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029709 B = 0.001622 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.248711 B =17261.581131 C =18005.849873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.547 3.453 12 O -0.515 6.515 13 N -0.627 5.627 14 C 0.101 3.899 15 C -0.124 4.124 16 C -0.100 4.100 17 H 0.090 0.910 18 C -0.117 4.117 19 C 0.114 3.886 20 N -0.730 5.730 21 C 0.529 3.471 22 O -0.532 6.532 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.123 4.123 27 C 0.110 3.890 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.647 -31.185 -0.643 34.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.336 3.664 12 O -0.389 6.389 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.162 4.162 16 C -0.119 4.119 17 H 0.108 0.892 18 C -0.155 4.155 19 C -0.009 4.009 20 N -0.381 5.381 21 C 0.315 3.685 22 O -0.408 6.408 23 C -0.164 4.164 24 C -0.162 4.162 25 C -0.180 4.180 26 C -0.160 4.160 27 C -0.013 4.013 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.964 -30.988 -0.113 32.870 hybrid contribution 2.466 1.239 -0.399 2.788 sum 13.429 -29.749 -0.512 32.643 Atomic orbital electron populations 1.70022 1.05956 1.27448 1.46810 1.24994 0.95026 0.99014 0.94537 0.86163 0.79400 0.81566 0.78334 1.20274 1.20737 1.19708 1.22860 0.94891 0.91630 1.58999 0.90944 1.85419 1.04975 0.96330 1.96709 1.23504 1.06426 0.95002 1.04754 1.20037 0.85696 0.85493 0.75176 1.90716 1.14938 1.85134 1.48110 1.48495 1.06495 1.05698 1.75808 1.21986 0.80608 0.97431 1.02202 1.22680 0.97694 0.93863 1.01964 1.22321 0.95293 0.93189 1.01126 0.89197 1.21717 0.98034 0.94279 1.01497 1.21464 0.99286 0.80283 0.99909 1.45969 1.28229 1.10624 1.53327 1.20109 0.81521 0.86916 0.79976 1.90731 1.34453 1.78968 1.36679 1.22447 1.00843 0.91746 1.01366 1.22830 0.96617 0.99121 0.97662 1.22893 0.95712 1.02026 0.97370 1.22766 0.97408 0.98738 0.97134 1.22247 0.97618 0.80678 1.00735 0.92178 0.89318 0.89345 0.91288 0.91251 0.89906 0.90391 0.90642 0.90722 0.90879 0.91228 0.76580 0.88167 0.89039 0.91145 0.89750 0.91180 0.89872 0.89428 0.91681 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.40 13.22 55.49 0.73 -25.66 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.43 9.50 30.94 0.29 -15.13 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.07 5.35 36.00 0.19 -2.87 16 11 C 0.55 10.88 7.87 -10.99 -0.09 10.79 16 12 O -0.52 -12.35 16.12 5.56 0.09 -12.27 16 13 N -0.63 -9.14 3.33 -170.51 -0.57 -9.71 16 14 C 0.10 1.05 6.49 -3.07 -0.02 1.03 16 15 C -0.12 -0.85 6.42 -24.89 -0.16 -1.00 16 16 C -0.10 -0.75 3.07 -88.46 -0.27 -1.03 16 17 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 18 C -0.12 -0.62 4.85 -26.73 -0.13 -0.75 16 19 C 0.11 0.86 5.52 -4.04 -0.02 0.84 16 20 N -0.73 -4.78 5.56 -60.29 -0.33 -5.11 16 21 C 0.53 4.79 7.08 -10.99 -0.08 4.71 16 22 O -0.53 -7.26 15.83 5.56 0.09 -7.17 16 23 C -0.14 -0.86 4.34 -90.96 -0.39 -1.25 16 24 C -0.12 -0.58 7.66 -25.92 -0.20 -0.77 16 25 C -0.14 -0.89 7.75 -25.91 -0.20 -1.09 16 26 C -0.12 -0.81 7.46 -25.91 -0.19 -1.00 16 27 C 0.11 1.30 5.57 -2.52 -0.01 1.28 16 28 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 30 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.45 8.04 -51.93 -0.42 0.04 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 37 H 0.07 0.71 7.46 -51.93 -0.39 0.32 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.40 1.39 8.47 -40.82 -0.35 1.05 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.74 7.41 -51.93 -0.38 0.35 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 48 H 0.08 1.07 7.96 -51.93 -0.41 0.66 16 LS Contribution 405.42 15.07 6.11 6.11 Total: -1.00 -37.65 405.42 -10.74 -48.39 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -8.25 Total: -2.95 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.38 Total: -4.22 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: -0.17 Total: -40.49 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.18 Total: -19.44 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.65 -10.74 -48.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.250 kcal (2) G-P(sol) polarization free energy of solvation -37.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds