Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86795 * 120.00488 * 2 1 4 4 H 1.48496 * 109.47522 * 269.99882 * 3 2 1 5 5 H 1.48500 * 109.46927 * 30.00179 * 3 2 1 6 6 H 1.48505 * 109.47170 * 149.99684 * 3 2 1 7 7 C 1.38806 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99765 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99833 * 359.97438 * 7 2 1 10 10 C 1.81004 * 100.00083 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47316 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99743 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99779 * 179.97438 * 11 10 9 14 14 C 1.47012 * 125.65042 * 359.95617 * 13 11 10 15 15 C 1.54322 * 107.27369 * 178.97703 * 14 13 11 16 16 C 1.55164 * 102.94252 * 337.80931 * 15 14 13 17 17 H 1.09004 * 111.03384 * 277.41446 * 16 15 14 18 18 C 1.52995 * 111.00601 * 153.57517 * 16 15 14 19 19 C 1.53000 * 109.47006 * 181.35334 * 18 16 15 20 20 N 1.46503 * 109.47169 * 180.02562 * 19 18 16 21 21 C 1.34775 * 120.00029 * 180.02562 * 20 19 18 22 22 O 1.21281 * 120.00073 * 359.97438 * 21 20 19 23 23 C 1.50701 * 119.99783 * 179.97438 * 21 20 19 24 24 C 1.53785 * 113.69000 * 80.93572 * 23 21 20 25 25 C 1.53777 * 87.08241 * 89.12299 * 24 23 21 26 26 C 1.53781 * 113.61206 * 178.47107 * 23 21 20 27 27 C 1.47421 * 125.64329 * 180.02562 * 13 11 10 28 28 H 0.96999 * 119.99514 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47272 * 60.00018 * 10 9 7 30 30 H 1.09000 * 109.46578 * 300.00384 * 10 9 7 31 31 H 1.08998 * 109.88419 * 298.39711 * 14 13 11 32 32 H 1.09007 * 109.88076 * 59.40697 * 14 13 11 33 33 H 1.09000 * 110.72538 * 219.45023 * 15 14 13 34 34 H 1.09000 * 110.72129 * 96.17141 * 15 14 13 35 35 H 1.08995 * 109.47152 * 61.34815 * 18 16 15 36 36 H 1.09005 * 109.46758 * 301.35144 * 18 16 15 37 37 H 1.08995 * 109.47589 * 59.99748 * 19 18 16 38 38 H 1.09005 * 109.47207 * 299.99535 * 19 18 16 39 39 H 0.97003 * 119.99937 * 359.97438 * 20 19 18 40 40 H 1.09002 * 112.85178 * 309.66413 * 23 21 20 41 41 H 1.08999 * 113.61060 * 203.67722 * 24 23 21 42 42 H 1.08997 * 113.61198 * 334.57515 * 24 23 21 43 43 H 1.08994 * 113.61814 * 270.88533 * 25 24 23 44 44 H 1.08999 * 113.60923 * 139.97748 * 25 24 23 45 45 H 1.09000 * 113.61578 * 25.34539 * 26 23 21 46 46 H 1.09001 * 113.61682 * 156.17118 * 26 23 21 47 47 H 1.09004 * 110.36668 * 85.25615 * 27 13 11 48 48 H 1.09003 * 110.37144 * 322.93029 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1291 -2.7279 -0.0005 10 6 2.5156 -3.8916 -0.0005 11 6 1.9870 -5.3028 -0.0012 12 8 0.7907 -5.5022 -0.0011 13 7 2.8438 -6.3432 -0.0018 14 6 4.3106 -6.2453 -0.0029 15 6 4.8660 -7.6849 0.0230 16 6 3.6844 -8.5028 0.6083 17 1 3.6701 -8.4455 1.6967 18 6 3.7392 -9.9580 0.1393 19 6 2.5423 -10.7226 0.7082 20 7 2.5951 -12.1163 0.2596 21 6 1.6358 -12.9833 0.6396 22 8 0.7290 -12.6099 1.3533 23 6 1.6898 -14.4168 0.1777 24 6 2.6461 -15.2956 1.0010 25 6 1.4552 -15.5842 1.9301 26 6 0.5452 -15.2845 0.7270 27 6 2.4650 -7.7680 -0.0030 28 1 -0.4849 0.8401 0.0004 29 1 3.1242 -3.7316 0.8894 30 1 3.1242 -3.7314 -0.8905 31 1 4.6474 -5.7342 -0.9048 32 1 4.6464 -5.7001 0.8793 33 1 5.7390 -7.7500 0.6725 34 1 5.1076 -8.0233 -0.9846 35 1 4.6636 -10.4178 0.4887 36 1 3.7066 -9.9902 -0.9498 37 1 1.6180 -10.2628 0.3587 38 1 2.5750 -10.6905 1.7973 39 1 3.3201 -12.4149 -0.3115 40 1 1.8297 -14.5094 -0.8994 41 1 3.0036 -16.1740 0.4636 42 1 3.4489 -14.7362 1.4812 43 1 1.3528 -14.8670 2.7444 44 1 1.4057 -16.6194 2.2677 45 1 -0.3480 -14.7161 0.9862 46 1 0.3274 -16.1591 0.1141 47 1 2.2861 -8.1121 -1.0217 48 1 1.5795 -7.9257 0.6126 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001059197879.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = -90.941053 kcal Electronic energy + Delta-G solvation = -26147.240117 eV Core-core repulsion = 22327.254135 eV Total energy + Delta-G solvation = -3819.985982 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44125 -41.06709 -38.95643 -38.23030 -36.35575 -34.60766 -34.01627 -31.39900 -30.82482 -28.82740 -27.71775 -27.06677 -26.49391 -25.03325 -23.29500 -22.37143 -21.37446 -20.73061 -20.03856 -19.58421 -18.09907 -17.98761 -17.46292 -17.00760 -16.90352 -16.87876 -16.56982 -16.15561 -15.74163 -15.57137 -15.49117 -14.92968 -14.56887 -14.43449 -14.22203 -14.01471 -13.90371 -13.60005 -13.32405 -13.26562 -13.17797 -13.12649 -12.98015 -12.89842 -12.63001 -12.39213 -12.04323 -11.94859 -11.75674 -11.65408 -11.55936 -11.32791 -11.31037 -11.15812 -11.01252 -10.79303 -10.31006 -10.12069 -9.71740 -8.71351 -8.36269 -6.15962 1.22229 1.42070 1.43882 1.52222 1.55481 1.58260 2.06918 2.17888 2.25745 2.97869 3.20427 3.42300 3.55387 3.61918 3.66766 3.76182 3.83424 3.85524 3.93751 4.12021 4.19038 4.25340 4.28571 4.33508 4.39672 4.44022 4.50271 4.66310 4.69419 4.74395 4.83014 4.87117 4.89949 4.91492 5.02424 5.06215 5.07693 5.10675 5.17617 5.19116 5.33608 5.39496 5.43385 5.44958 5.47946 6.17864 6.36973 6.56420 7.04387 7.08127 7.27017 8.73214 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029709 B = 0.001622 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.248711 B =17261.581131 C =18005.849873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.002 2.998 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.118 4.118 11 C 0.542 3.458 12 O -0.572 6.572 13 N -0.619 5.619 14 C 0.085 3.915 15 C -0.108 4.108 16 C -0.088 4.088 17 H 0.087 0.913 18 C -0.101 4.101 19 C 0.113 3.887 20 N -0.713 5.713 21 C 0.520 3.480 22 O -0.591 6.591 23 C -0.140 4.140 24 C -0.107 4.107 25 C -0.151 4.151 26 C -0.129 4.129 27 C 0.101 3.899 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.054 0.946 39 H 0.420 0.580 40 H 0.129 0.871 41 H 0.120 0.880 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.112 0.888 47 H 0.072 0.928 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.498 -32.731 -1.792 37.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.823 3.177 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.269 4.269 11 C 0.330 3.670 12 O -0.451 6.451 13 N -0.353 5.353 14 C -0.037 4.037 15 C -0.146 4.146 16 C -0.108 4.108 17 H 0.106 0.894 18 C -0.139 4.139 19 C -0.011 4.011 20 N -0.365 5.365 21 C 0.307 3.693 22 O -0.471 6.471 23 C -0.162 4.162 24 C -0.145 4.145 25 C -0.188 4.188 26 C -0.167 4.167 27 C -0.021 4.021 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.257 0.743 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.068 0.932 46 H 0.130 0.870 47 H 0.090 0.910 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.920 -32.587 -1.289 36.291 hybrid contribution 0.968 1.587 -0.029 1.860 sum 16.889 -31.000 -1.318 35.326 Atomic orbital electron populations 1.70195 1.08080 1.28673 1.47883 1.26176 0.95984 1.03427 0.93598 0.84909 0.78174 0.75736 0.78870 1.19167 1.20280 1.18059 1.23193 0.95351 0.91772 1.59120 0.89798 1.85641 1.10691 0.99451 1.97051 1.23288 1.03322 0.93882 1.06376 1.19852 0.85486 0.86220 0.75457 1.90690 1.17313 1.85864 1.51236 1.48488 1.08182 1.05661 1.72988 1.22434 0.77586 1.00641 1.02989 1.22706 0.97546 0.90453 1.03849 1.22278 0.93353 0.94287 1.00852 0.89449 1.21640 0.97902 0.92089 1.02254 1.21383 0.99408 0.81081 0.99197 1.45835 1.28104 1.09853 1.52711 1.20799 0.80929 0.88460 0.79103 1.90710 1.36820 1.80151 1.39400 1.22468 1.01101 0.89536 1.03048 1.22832 0.95537 0.99555 0.96540 1.22892 0.97067 1.02025 0.96843 1.22848 0.96382 0.99427 0.98015 1.22506 0.98949 0.79568 1.01092 0.91955 0.87581 0.87432 0.90336 0.90656 0.86950 0.88286 0.87389 0.89168 0.93870 0.92724 0.74276 0.85347 0.86151 0.90884 0.92651 0.89778 0.93242 0.86985 0.90988 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.00 13.22 21.65 0.29 -56.71 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.95 29.55 68.60 2.03 45.98 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.55 -31.82 9.50 67.96 0.65 -31.18 16 8 H 0.08 4.51 7.80 -2.91 -0.02 4.48 16 9 S -0.16 -8.98 20.57 -56.49 -1.16 -10.14 16 10 C -0.12 -4.96 5.35 71.24 0.38 -4.58 16 11 C 0.54 22.09 7.87 87.66 0.69 22.78 16 12 O -0.57 -29.14 16.12 -3.03 -0.05 -29.19 16 13 N -0.62 -17.68 3.33 -811.76 -2.70 -20.38 16 14 C 0.09 1.52 6.49 86.73 0.56 2.08 16 15 C -0.11 -0.97 6.42 31.78 0.20 -0.76 16 16 C -0.09 -1.10 3.07 -9.39 -0.03 -1.13 16 17 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 18 C -0.10 -0.72 4.85 30.59 0.15 -0.58 16 19 C 0.11 1.66 5.52 86.38 0.48 2.13 16 20 N -0.71 -8.33 5.56 -463.05 -2.57 -10.90 16 21 C 0.52 9.43 7.08 87.66 0.62 10.05 16 22 O -0.59 -17.44 15.83 -3.03 -0.05 -17.49 16 23 C -0.14 -1.46 4.34 -11.01 -0.05 -1.51 16 24 C -0.11 -0.71 7.66 31.12 0.24 -0.47 16 25 C -0.15 -1.81 7.75 31.12 0.24 -1.57 16 26 C -0.13 -1.67 7.46 31.12 0.23 -1.43 16 27 C 0.10 2.37 5.57 86.87 0.48 2.85 16 28 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 30 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.29 8.14 -2.38 -0.02 1.28 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.57 8.04 -2.39 -0.02 0.55 16 35 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.09 0.46 8.10 -2.38 -0.02 0.44 16 37 H 0.04 0.90 7.46 -2.39 -0.02 0.88 16 38 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.42 1.54 8.47 -92.71 -0.79 0.76 16 40 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.07 0.47 8.10 -2.39 -0.02 0.46 16 43 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.05 0.97 7.41 -2.39 -0.02 0.96 16 46 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.07 1.59 8.00 -2.39 -0.02 1.57 16 48 H 0.05 1.44 7.96 -2.39 -0.02 1.42 16 Total: -1.00 -90.43 405.42 1.25 -89.17 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.16 Total: 11.76 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 5.31 Total: -2.11 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -4.99 Total: -87.99 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.10 Total: -46.68 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.16 Total: -10.14 kcal Total: -90.43 1.25 -89.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059197879.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.767 kcal (2) G-P(sol) polarization free energy of solvation -90.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds