Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48502 * 109.46990 * 270.00427 * 3 2 1 5 5 H 1.48504 * 109.47061 * 30.00054 * 3 2 1 6 6 H 1.48503 * 109.47156 * 150.00346 * 3 2 1 7 7 C 1.38804 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99789 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99803 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99940 * 359.72939 * 11 10 9 13 13 N 1.34776 * 119.99816 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99769 * 174.69679 * 13 11 10 15 15 C 1.52995 * 112.84967 * 294.02400 * 14 13 11 16 16 N 1.46503 * 109.47348 * 311.52135 * 15 14 13 17 17 C 1.34775 * 120.00333 * 174.95954 * 16 15 14 18 18 O 1.21274 * 119.99817 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99915 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.46959 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47241 * 180.02562 * 20 19 17 22 22 C 1.52999 * 117.50049 * 243.74923 * 21 20 19 23 23 C 1.52994 * 117.50298 * 175.08803 * 21 20 19 24 24 C 1.53780 * 113.61541 * 162.71822 * 14 13 11 25 25 C 1.53787 * 87.07957 * 270.88459 * 24 14 13 26 26 C 1.53777 * 87.08069 * 334.56550 * 25 24 14 27 27 H 0.96994 * 119.99597 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47276 * 60.00372 * 10 9 7 29 29 H 1.09001 * 109.47600 * 299.99956 * 10 9 7 30 30 H 0.96997 * 119.99921 * 354.69348 * 13 11 10 31 31 H 1.08996 * 109.47620 * 71.51889 * 15 14 13 32 32 H 1.09003 * 109.47507 * 191.52198 * 15 14 13 33 33 H 0.97007 * 119.99534 * 354.95633 * 16 15 14 34 34 H 1.08998 * 109.47277 * 299.99658 * 19 17 16 35 35 H 1.08999 * 109.46659 * 60.00169 * 19 17 16 36 36 H 1.09006 * 109.47153 * 299.99865 * 20 19 17 37 37 H 1.09000 * 109.47501 * 59.99827 * 20 19 17 38 38 H 1.09003 * 115.54696 * 29.41300 * 21 20 19 39 39 H 1.09008 * 117.49714 * 359.97438 * 22 21 20 40 40 H 1.08997 * 117.50241 * 145.01549 * 22 21 20 41 41 H 1.09001 * 117.49952 * 214.97747 * 23 21 20 42 42 H 1.08999 * 117.49711 * 359.97438 * 23 21 20 43 43 H 1.09001 * 113.61444 * 25.42814 * 24 14 13 44 44 H 1.09000 * 113.61699 * 156.33432 * 24 14 13 45 45 H 1.09003 * 113.60967 * 220.01792 * 25 24 14 46 46 H 1.08998 * 113.61533 * 89.11421 * 25 24 14 47 47 H 1.09003 * 113.61592 * 270.88651 * 26 25 24 48 48 H 1.09005 * 113.61427 * 139.98017 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7910 -5.5024 0.0034 13 7 2.8441 -6.3432 -0.0008 14 6 2.3344 -7.7117 0.1159 15 6 1.6821 -7.9892 1.4717 16 7 2.5678 -7.5275 2.5435 17 6 2.1561 -7.5761 3.8259 18 8 1.0522 -8.0017 4.0926 19 6 3.0675 -7.1016 4.9284 20 6 2.3632 -7.2628 6.2770 21 6 3.2882 -6.7805 7.3962 22 6 3.7521 -7.8145 8.4241 23 6 2.7224 -6.7524 8.8174 24 6 3.3483 -8.7854 -0.3132 25 6 2.7824 -8.6390 -1.7357 26 6 1.4776 -8.1542 -1.0820 27 1 -0.4849 0.8400 -0.0004 28 1 3.1244 -3.7315 0.8895 29 1 3.1245 -3.7315 -0.8905 30 1 3.7981 -6.1858 -0.0777 31 1 0.7314 -7.4597 1.5327 32 1 1.5091 -9.0600 1.5794 33 1 3.4506 -7.1868 2.3300 34 1 3.9828 -7.6935 4.9231 35 1 3.3128 -6.0515 4.7701 36 1 1.4480 -6.6706 6.2820 37 1 2.1174 -8.3128 6.4354 38 1 3.9920 -5.9957 7.1190 39 1 3.3979 -8.8383 8.3032 40 1 4.7608 -7.7097 8.8235 41 1 3.0542 -5.9492 9.4754 42 1 1.6910 -7.0770 8.9551 43 1 4.3867 -8.4668 -0.2216 44 1 3.1636 -9.7631 0.1317 45 1 2.6800 -9.5867 -2.2644 46 1 3.2841 -7.8743 -2.3287 47 1 0.7815 -8.9594 -0.8472 48 1 1.0057 -7.3261 -1.6109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062727369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = -42.614697 kcal Electronic energy + Delta-G solvation = -27108.970340 eV Core-core repulsion = 23291.079946 eV Total energy + Delta-G solvation = -3817.890394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73216 -39.47555 -37.87494 -37.63848 -34.48311 -33.05270 -32.44890 -32.40296 -29.39383 -28.03865 -25.99160 -25.51973 -24.98306 -22.73171 -22.57433 -20.95845 -20.59901 -20.28669 -19.18314 -17.88373 -17.25386 -16.45869 -16.41974 -15.93674 -15.75439 -15.33435 -15.25549 -14.82795 -14.65044 -14.53912 -14.15910 -14.04392 -13.63624 -13.33941 -13.15989 -12.82915 -12.54879 -12.48942 -12.35994 -12.17667 -11.81247 -11.70850 -11.53500 -11.38125 -11.11907 -11.08454 -11.04825 -10.97675 -10.78499 -10.54478 -10.51792 -10.09814 -9.84301 -9.81015 -9.41106 -9.09297 -9.02120 -8.95179 -8.26041 -6.52347 -6.23771 -3.94574 2.66192 2.87782 3.03385 3.14088 3.20383 3.25926 3.29318 3.57283 3.62575 4.16602 4.18643 4.36506 4.46818 4.54626 4.61220 4.68381 4.71279 4.77580 5.00057 5.01856 5.11417 5.13760 5.24697 5.31478 5.39409 5.40349 5.44878 5.49204 5.52920 5.64328 5.65756 5.67914 5.77568 5.81893 5.86041 5.87250 5.93122 5.96498 6.05304 6.08310 6.09396 6.17887 6.38399 6.67407 7.45312 7.56868 7.62436 8.22732 8.32607 8.56569 9.21465 10.83582 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006978 B = 0.003246 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4011.495836 B = 8623.001605 C =11867.828711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.057 6.057 10 C -0.153 4.153 11 C 0.535 3.465 12 O -0.505 6.505 13 N -0.721 5.721 14 C 0.143 3.857 15 C 0.121 3.879 16 N -0.724 5.724 17 C 0.511 3.489 18 O -0.541 6.541 19 C -0.137 4.137 20 C -0.074 4.074 21 C -0.153 4.153 22 C -0.183 4.183 23 C -0.181 4.181 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.135 4.135 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.399 0.601 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.398 0.602 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.089 0.911 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.754 -19.353 6.750 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.169 5.831 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.377 6.377 13 N -0.377 5.377 14 C 0.055 3.945 15 C -0.003 4.003 16 N -0.375 5.375 17 C 0.298 3.702 18 O -0.418 6.418 19 C -0.177 4.177 20 C -0.111 4.111 21 C -0.171 4.171 22 C -0.220 4.220 23 C -0.218 4.218 24 C -0.174 4.174 25 C -0.176 4.176 26 C -0.174 4.174 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.233 0.767 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.231 0.769 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.108 0.892 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.755 -19.879 6.961 23.212 hybrid contribution 2.942 1.657 -0.196 3.382 sum 12.697 -18.222 6.765 23.217 Atomic orbital electron populations 1.70018 1.05949 1.27487 1.46729 1.24996 0.95025 0.99036 0.94528 0.86174 0.79400 0.81602 0.78343 1.20278 1.20731 1.19705 1.22854 0.94850 0.91683 1.59080 0.90992 1.85454 1.04661 0.96247 1.96698 1.23534 1.06682 0.95437 1.04744 1.20294 0.86597 0.86001 0.74944 1.90713 1.15242 1.85380 1.46403 1.45730 1.10012 1.04228 1.77686 1.21462 0.96346 0.82647 0.93999 1.21649 0.94837 0.99564 0.84298 1.45839 1.19486 1.66031 1.06147 1.20720 0.87872 0.78007 0.83625 1.90706 1.21567 1.46216 1.83320 1.21649 0.99004 1.03429 0.93626 1.20912 0.97556 1.02120 0.90550 1.22360 1.02339 1.01831 0.90604 1.23058 0.99356 0.95522 1.04076 1.22972 0.99116 1.01799 0.97888 1.23267 0.98430 0.98506 0.97184 1.22830 0.97300 1.01596 0.95907 1.23177 0.96626 1.01752 0.95805 0.92155 0.89364 0.89389 0.76685 0.89713 0.91057 0.76878 0.89015 0.88649 0.90580 0.91157 0.87653 0.88849 0.89028 0.88842 0.88693 0.90902 0.88707 0.91144 0.89979 0.89227 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 11 C 0.54 9.21 7.40 -10.98 -0.08 9.13 16 12 O -0.50 -10.79 13.86 5.56 0.08 -10.71 16 13 N -0.72 -8.30 4.53 -46.85 -0.21 -8.51 16 14 C 0.14 1.50 0.63 -131.01 -0.08 1.41 16 15 C 0.12 1.50 4.92 -4.04 -0.02 1.48 16 16 N -0.72 -8.00 5.38 -60.29 -0.32 -8.33 16 17 C 0.51 6.59 7.83 -10.98 -0.09 6.51 16 18 O -0.54 -9.29 15.98 5.56 0.09 -9.20 16 19 C -0.14 -1.28 5.66 -27.88 -0.16 -1.44 16 20 C -0.07 -0.75 4.78 -26.73 -0.13 -0.88 16 21 C -0.15 -1.31 5.73 -90.63 -0.52 -1.83 16 22 C -0.18 -1.39 10.18 -26.70 -0.27 -1.67 16 23 C -0.18 -1.50 10.25 -26.70 -0.27 -1.77 16 24 C -0.14 -0.97 7.37 -25.92 -0.19 -1.16 16 25 C -0.14 -1.14 7.99 -25.92 -0.21 -1.34 16 26 C -0.13 -1.48 6.95 -25.92 -0.18 -1.67 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 29 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 30 H 0.40 3.35 8.67 -40.82 -0.35 2.99 16 31 H 0.08 1.42 7.34 -51.93 -0.38 1.04 16 32 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 33 H 0.40 3.35 8.11 -40.82 -0.33 3.02 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 37 H 0.07 0.75 7.83 -51.93 -0.41 0.35 16 38 H 0.11 0.83 8.08 -51.93 -0.42 0.42 16 39 H 0.09 0.69 8.03 -51.92 -0.42 0.28 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.42 8.09 -51.93 -0.42 -0.01 16 44 H 0.09 0.60 7.96 -51.93 -0.41 0.19 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 48 H 0.08 1.20 7.19 -51.93 -0.37 0.83 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -35.91 410.13 -10.59 -46.50 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -8.12 Total: 5.63 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.78 Total: -8.71 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.20 Total: -42.14 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.17 Total: -19.91 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.91 -10.59 -46.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062727369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.883 kcal (2) G-P(sol) polarization free energy of solvation -35.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds