Wall clock time and date at job start Sat Apr 11 2020 06:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86798 * 120.00235 * 2 1 4 4 H 1.48502 * 109.46990 * 270.00427 * 3 2 1 5 5 H 1.48504 * 109.47061 * 30.00054 * 3 2 1 6 6 H 1.48503 * 109.47156 * 150.00346 * 3 2 1 7 7 C 1.38804 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99789 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99803 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99940 * 359.72939 * 11 10 9 13 13 N 1.34776 * 119.99816 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99769 * 174.69679 * 13 11 10 15 15 C 1.52995 * 112.84967 * 294.02400 * 14 13 11 16 16 N 1.46503 * 109.47348 * 311.52135 * 15 14 13 17 17 C 1.34775 * 120.00333 * 174.95954 * 16 15 14 18 18 O 1.21274 * 119.99817 * 359.97438 * 17 16 15 19 19 C 1.50707 * 119.99915 * 179.97438 * 17 16 15 20 20 C 1.52998 * 109.46959 * 179.97438 * 19 17 16 21 21 C 1.52997 * 109.47241 * 180.02562 * 20 19 17 22 22 C 1.52999 * 117.50049 * 243.74923 * 21 20 19 23 23 C 1.52994 * 117.50298 * 175.08803 * 21 20 19 24 24 C 1.53780 * 113.61541 * 162.71822 * 14 13 11 25 25 C 1.53787 * 87.07957 * 270.88459 * 24 14 13 26 26 C 1.53777 * 87.08069 * 334.56550 * 25 24 14 27 27 H 0.96994 * 119.99597 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47276 * 60.00372 * 10 9 7 29 29 H 1.09001 * 109.47600 * 299.99956 * 10 9 7 30 30 H 0.96997 * 119.99921 * 354.69348 * 13 11 10 31 31 H 1.08996 * 109.47620 * 71.51889 * 15 14 13 32 32 H 1.09003 * 109.47507 * 191.52198 * 15 14 13 33 33 H 0.97007 * 119.99534 * 354.95633 * 16 15 14 34 34 H 1.08998 * 109.47277 * 299.99658 * 19 17 16 35 35 H 1.08999 * 109.46659 * 60.00169 * 19 17 16 36 36 H 1.09006 * 109.47153 * 299.99865 * 20 19 17 37 37 H 1.09000 * 109.47501 * 59.99827 * 20 19 17 38 38 H 1.09003 * 115.54696 * 29.41300 * 21 20 19 39 39 H 1.09008 * 117.49714 * 359.97438 * 22 21 20 40 40 H 1.08997 * 117.50241 * 145.01549 * 22 21 20 41 41 H 1.09001 * 117.49952 * 214.97747 * 23 21 20 42 42 H 1.08999 * 117.49711 * 359.97438 * 23 21 20 43 43 H 1.09001 * 113.61444 * 25.42814 * 24 14 13 44 44 H 1.09000 * 113.61699 * 156.33432 * 24 14 13 45 45 H 1.09003 * 113.60967 * 220.01792 * 25 24 14 46 46 H 1.08998 * 113.61533 * 89.11421 * 25 24 14 47 47 H 1.09003 * 113.61592 * 270.88651 * 26 25 24 48 48 H 1.09005 * 113.61427 * 139.98017 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7910 -5.5024 0.0034 13 7 2.8441 -6.3432 -0.0008 14 6 2.3344 -7.7117 0.1159 15 6 1.6821 -7.9892 1.4717 16 7 2.5678 -7.5275 2.5435 17 6 2.1561 -7.5761 3.8259 18 8 1.0522 -8.0017 4.0926 19 6 3.0675 -7.1016 4.9284 20 6 2.3632 -7.2628 6.2770 21 6 3.2882 -6.7805 7.3962 22 6 3.7521 -7.8145 8.4241 23 6 2.7224 -6.7524 8.8174 24 6 3.3483 -8.7854 -0.3132 25 6 2.7824 -8.6390 -1.7357 26 6 1.4776 -8.1542 -1.0820 27 1 -0.4849 0.8400 -0.0004 28 1 3.1244 -3.7315 0.8895 29 1 3.1245 -3.7315 -0.8905 30 1 3.7981 -6.1858 -0.0777 31 1 0.7314 -7.4597 1.5327 32 1 1.5091 -9.0600 1.5794 33 1 3.4506 -7.1868 2.3300 34 1 3.9828 -7.6935 4.9231 35 1 3.3128 -6.0515 4.7701 36 1 1.4480 -6.6706 6.2820 37 1 2.1174 -8.3128 6.4354 38 1 3.9920 -5.9957 7.1190 39 1 3.3979 -8.8383 8.3032 40 1 4.7608 -7.7097 8.8235 41 1 3.0542 -5.9492 9.4754 42 1 1.6910 -7.0770 8.9551 43 1 4.3867 -8.4668 -0.2216 44 1 3.1636 -9.7631 0.1317 45 1 2.6800 -9.5867 -2.2644 46 1 3.2841 -7.8743 -2.3287 47 1 0.7815 -8.9594 -0.8472 48 1 1.0057 -7.3261 -1.6109 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062727369.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:08 Heat of formation + Delta-G solvation = -67.513743 kcal Electronic energy + Delta-G solvation = -27110.050044 eV Core-core repulsion = 23291.079946 eV Total energy + Delta-G solvation = -3818.970098 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76241 -40.53708 -39.06606 -38.36006 -35.51264 -34.59159 -34.28062 -33.22514 -30.76996 -29.10814 -27.66331 -26.74521 -25.80495 -23.64270 -23.20769 -22.04898 -21.45227 -21.22756 -20.19936 -19.82663 -18.20564 -17.82401 -17.40203 -16.88391 -16.83889 -16.75346 -16.40509 -16.22785 -15.96139 -15.60240 -15.25318 -15.06711 -14.84293 -14.63151 -14.37242 -14.09291 -13.81541 -13.55790 -13.24576 -13.16533 -13.09581 -12.90121 -12.69292 -12.58759 -12.45100 -12.25245 -12.13593 -11.87813 -11.84765 -11.71615 -11.36367 -11.23860 -11.14549 -10.88402 -10.78265 -10.75703 -10.25888 -10.08692 -10.06803 -8.66655 -8.34880 -6.12794 1.26209 1.42007 1.46588 1.56221 1.63577 1.65573 2.09946 2.26810 2.32156 2.92196 2.99495 3.30457 3.40007 3.59315 3.71503 3.74141 3.81724 3.90313 4.01827 4.05145 4.09108 4.29007 4.31181 4.39996 4.44309 4.48475 4.51864 4.60007 4.71912 4.79324 4.80997 4.82687 4.87138 5.04823 5.06454 5.06890 5.12645 5.13565 5.14452 5.26352 5.28574 5.40553 5.41323 5.46790 5.67604 6.19320 6.52652 6.55779 7.06501 7.27076 7.30156 8.74239 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006978 B = 0.003246 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4011.495836 B = 8623.001605 C =11867.828711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.128 4.128 11 C 0.538 3.462 12 O -0.554 6.554 13 N -0.692 5.692 14 C 0.137 3.863 15 C 0.126 3.874 16 N -0.711 5.711 17 C 0.502 3.498 18 O -0.594 6.594 19 C -0.127 4.127 20 C -0.072 4.072 21 C -0.157 4.157 22 C -0.171 4.171 23 C -0.193 4.193 24 C -0.110 4.110 25 C -0.129 4.129 26 C -0.149 4.149 27 H 0.270 0.730 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.420 0.580 31 H 0.031 0.969 32 H 0.083 0.917 33 H 0.414 0.586 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.552 -20.163 6.819 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.179 1.179 7 C -0.691 4.691 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.324 3.676 12 O -0.431 6.431 13 N -0.348 5.348 14 C 0.050 3.950 15 C 0.001 3.999 16 N -0.362 5.362 17 C 0.291 3.709 18 O -0.474 6.474 19 C -0.167 4.167 20 C -0.110 4.110 21 C -0.175 4.175 22 C -0.208 4.208 23 C -0.230 4.230 24 C -0.148 4.148 25 C -0.166 4.166 26 C -0.188 4.188 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.259 0.741 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.251 0.749 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.104 0.896 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.106 0.894 46 H 0.100 0.900 47 H 0.112 0.888 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.651 -20.714 7.011 26.323 hybrid contribution 1.411 1.781 -0.227 2.283 sum 16.062 -18.933 6.784 25.739 Atomic orbital electron populations 1.70197 1.08066 1.28546 1.48146 1.26149 0.95931 1.03414 0.93816 0.84956 0.78267 0.75993 0.78783 1.19328 1.20542 1.17915 1.23195 0.95327 0.91917 1.58657 0.89763 1.85695 1.10749 0.99410 1.97037 1.23366 1.03416 0.94400 1.06745 1.20029 0.86312 0.86443 0.74863 1.90718 1.17519 1.85901 1.48951 1.45367 1.10405 1.03593 1.75385 1.21664 0.98129 0.82623 0.92597 1.21507 0.93167 0.99461 0.85797 1.45743 1.19845 1.65258 1.05401 1.21466 0.87638 0.77103 0.84741 1.90687 1.23959 1.48656 1.84129 1.21670 0.99138 1.04523 0.91321 1.20831 0.97031 1.00992 0.92119 1.22326 1.02380 1.02787 0.90021 1.23121 0.99820 0.95138 1.02721 1.23049 0.99117 1.02758 0.98056 1.23224 0.98725 0.97481 0.95336 1.22801 0.94827 1.02229 0.96746 1.23265 0.98217 1.00826 0.96463 0.92095 0.87178 0.87223 0.74126 0.95086 0.89899 0.74926 0.85394 0.87468 0.93631 0.92150 0.86427 0.88846 0.87378 0.87943 0.89623 0.87903 0.86961 0.89405 0.90015 0.88809 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.40 13.22 21.65 0.29 -56.12 16 2 C 0.01 0.65 5.49 84.86 0.47 1.12 16 3 Si 1.00 43.25 29.55 68.60 2.03 45.28 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.54 -30.61 9.50 67.96 0.65 -29.96 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.16 -8.59 20.57 -56.49 -1.16 -9.75 16 10 C -0.13 -4.79 6.16 71.24 0.44 -4.35 16 11 C 0.54 18.46 7.40 87.66 0.65 19.11 16 12 O -0.55 -24.96 13.86 -3.03 -0.04 -25.01 16 13 N -0.69 -14.56 4.53 -420.54 -1.91 -16.46 16 14 C 0.14 2.65 0.63 4.13 0.00 2.65 16 15 C 0.13 3.11 4.92 86.38 0.43 3.54 16 16 N -0.71 -14.77 5.38 -463.07 -2.49 -17.26 16 17 C 0.50 12.82 7.83 87.66 0.69 13.50 16 18 O -0.59 -21.37 15.98 -3.01 -0.05 -21.42 16 19 C -0.13 -2.15 5.66 29.85 0.17 -1.99 16 20 C -0.07 -1.46 4.78 30.59 0.15 -1.31 16 21 C -0.16 -2.47 5.73 -10.80 -0.06 -2.53 16 22 C -0.17 -2.28 10.18 30.62 0.31 -1.97 16 23 C -0.19 -3.05 10.25 30.62 0.31 -2.73 16 24 C -0.11 -1.09 7.37 31.12 0.23 -0.86 16 25 C -0.13 -1.72 7.99 31.12 0.25 -1.47 16 26 C -0.15 -3.24 6.95 31.12 0.22 -3.02 16 27 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 28 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 29 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.42 5.35 8.67 -92.71 -0.80 4.55 16 31 H 0.03 1.12 7.34 -2.39 -0.02 1.10 16 32 H 0.08 1.84 7.94 -2.39 -0.02 1.82 16 33 H 0.41 5.66 8.11 -92.70 -0.75 4.91 16 34 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.18 8.10 -2.38 -0.02 1.16 16 37 H 0.06 1.32 7.83 -2.39 -0.02 1.30 16 38 H 0.12 1.57 8.08 -2.39 -0.02 1.55 16 39 H 0.09 1.25 8.03 -2.38 -0.02 1.23 16 40 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.10 0.52 8.09 -2.39 -0.02 0.50 16 44 H 0.11 0.86 7.96 -2.39 -0.02 0.84 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.09 1.91 8.10 -2.39 -0.02 1.89 16 48 H 0.04 1.35 7.19 -2.38 -0.02 1.33 16 Total: -1.00 -85.86 410.13 0.96 -84.90 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: -0.59 Total: 26.12 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.89 Total: -10.28 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -4.11 Total: -89.84 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.09 Total: -46.43 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -85.86 0.96 -84.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062727369.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.385 kcal (2) G-P(sol) polarization free energy of solvation -85.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds