Wall clock time and date at job start Sat Apr 11 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35047 * 126.39745 * 2 1 4 4 N 1.30500 * 108.69638 * 179.76158 * 3 2 1 5 5 C 1.34125 * 109.25969 * 0.38572 * 4 3 2 6 6 C 1.50703 * 125.98969 * 179.87474 * 5 4 3 7 7 H 1.08996 * 110.78013 * 331.46101 * 6 5 4 8 8 C 1.54319 * 110.71790 * 208.21182 * 6 5 4 9 9 N 1.47028 * 107.26947 * 219.44512 * 8 6 5 10 10 C 1.34775 * 125.64330 * 178.89884 * 9 8 6 11 11 O 1.21273 * 120.00567 * 359.97438 * 10 9 8 12 12 C 1.50704 * 119.99416 * 180.02562 * 10 9 8 13 13 H 1.09000 * 115.55345 * 34.41246 * 12 10 9 14 14 C 1.53003 * 117.49753 * 180.09052 * 12 10 9 15 15 C 1.53009 * 117.49376 * 248.74364 * 12 10 9 16 16 F 1.39895 * 117.49980 * 0.02562 * 15 12 10 17 17 F 1.39900 * 117.49243 * 145.02337 * 15 12 10 18 18 C 1.47419 * 108.70371 * 358.94679 * 9 8 6 19 19 C 1.54912 * 104.83391 * 24.12534 * 18 9 8 20 20 H 1.08995 * 111.03512 * 81.08074 * 19 18 9 21 21 N 1.46498 * 111.00363 * 204.91815 * 19 18 9 22 22 C 1.36943 * 119.99752 * 266.91804 * 21 19 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 19 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 19 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 C 1.34672 * 108.01807 * 359.61916 * 5 4 3 31 31 H 1.08993 * 109.47254 * 269.99891 * 1 2 3 32 32 H 1.08999 * 109.46775 * 29.99697 * 1 2 3 33 33 H 1.08997 * 109.46751 * 149.99397 * 1 2 3 34 34 H 1.07995 * 125.65048 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.88838 * 338.86845 * 8 6 5 36 36 H 1.09006 * 109.87996 * 99.88252 * 8 6 5 37 37 H 1.09002 * 117.49657 * 214.97598 * 14 12 10 38 38 H 1.08997 * 117.49926 * 359.96587 * 14 12 10 39 39 H 1.09002 * 110.36625 * 265.29189 * 18 9 8 40 40 H 1.08996 * 110.36984 * 142.96546 * 18 9 8 41 41 H 0.97001 * 120.00384 * 87.20160 * 21 19 18 42 42 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 43 43 H 1.08000 * 126.58746 * 180.25352 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 0.0051 5 6 3.5461 -0.6505 0.0001 6 6 4.7891 -1.5026 0.0007 7 1 5.6158 -0.9809 -0.4815 8 6 4.5224 -2.8577 -0.6877 9 7 5.2330 -3.8871 0.0849 10 6 5.2329 -5.2084 -0.1808 11 8 4.6078 -5.6365 -1.1278 12 6 6.0087 -6.1541 0.6996 13 1 6.0450 -5.8897 1.7564 14 6 5.9706 -7.6418 0.3444 15 6 7.2432 -6.8279 0.0970 16 9 7.5656 -6.5186 -1.2286 17 9 8.3319 -7.0580 0.9450 18 6 5.9447 -3.2348 1.1991 19 6 5.1700 -1.9164 1.4468 20 1 4.2795 -2.0934 2.0500 21 7 6.0323 -0.9101 2.0711 22 6 6.0660 -0.7882 3.4347 23 1 5.4603 -1.4370 4.0500 24 6 6.8787 0.1692 4.0261 25 7 7.6165 0.9602 3.2762 26 14 6.9253 0.3350 5.8861 27 1 6.0117 -0.6648 6.4952 28 1 8.3094 0.0992 6.3696 29 1 6.4921 1.7019 6.2723 30 6 2.2772 -1.1018 -0.0001 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5139 34 1 1.9335 2.1144 0.0004 35 1 3.4530 -3.0683 -0.6902 36 1 4.8978 -2.8339 -1.7108 37 1 5.9822 -8.3562 1.1676 38 1 5.3840 -7.9367 -0.5257 39 1 6.9759 -3.0216 0.9174 40 1 5.9159 -3.8646 2.0882 41 1 6.5763 -0.3273 1.5185 42 1 8.1847 1.6290 3.6894 43 1 1.9613 -2.1345 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070490225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:16 Heat of formation + Delta-G solvation = -6.817131 kcal Electronic energy + Delta-G solvation = -29873.522668 eV Core-core repulsion = 25399.803843 eV Total energy + Delta-G solvation = -4473.718825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -48.80366 -47.47583 -41.87253 -39.99784 -37.79362 -35.58531 -34.14221 -33.93430 -31.87396 -30.68500 -28.42119 -27.49154 -26.91397 -25.04412 -23.69557 -22.72285 -22.45602 -21.06145 -20.76084 -19.41494 -19.18356 -18.19413 -17.43321 -17.16517 -16.80247 -16.46825 -16.12141 -15.53329 -15.42125 -15.19617 -14.48210 -14.19823 -14.12581 -14.03623 -13.79133 -13.63622 -13.59923 -13.45132 -13.16493 -12.98386 -12.95781 -12.75544 -12.61970 -12.31650 -12.16409 -11.50388 -11.41517 -11.22976 -10.86286 -10.80867 -10.45748 -10.37842 -10.07583 -9.92801 -9.73652 -9.55855 -9.29252 -9.01146 -8.48696 -8.07744 -7.01254 -5.78703 -3.09098 2.12244 2.24129 2.75891 2.91287 2.95724 3.32895 3.41197 3.44820 3.46564 3.49223 4.01499 4.16277 4.42066 4.50166 4.60692 4.65622 4.74017 4.97368 4.98467 5.09723 5.13242 5.21189 5.24677 5.33673 5.40737 5.55604 5.57630 5.61772 5.68497 5.82103 5.87193 5.98713 6.20737 6.28049 6.35494 6.41035 6.44307 6.82227 6.99468 7.38034 7.59734 7.66881 8.12843 8.37656 8.42102 9.50145 10.04125 10.39425 11.42948 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007311 B = 0.004431 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3829.034832 B = 6317.660426 C = 9399.076378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.468 5.468 3 C 0.177 3.823 4 N -0.467 5.467 5 C 0.039 3.961 6 C -0.030 4.030 7 H 0.098 0.902 8 C 0.121 3.879 9 N -0.602 5.602 10 C 0.557 3.443 11 O -0.541 6.541 12 C -0.188 4.188 13 H 0.151 0.849 14 C -0.142 4.142 15 C 0.223 3.777 16 F -0.151 7.151 17 F -0.154 7.154 18 C 0.066 3.934 19 C 0.189 3.811 20 H 0.068 0.932 21 N -0.701 5.701 22 C -0.247 4.247 23 H 0.070 0.930 24 C -0.005 4.005 25 N -0.923 5.923 26 Si 0.905 3.095 27 H -0.281 1.281 28 H -0.291 1.291 29 H -0.292 1.292 30 C -0.066 4.066 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.201 0.799 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.390 0.610 42 H 0.256 0.744 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 -10.812 -7.265 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.152 5.152 3 C -0.105 4.105 4 N -0.184 5.184 5 C -0.091 4.091 6 C -0.051 4.051 7 H 0.116 0.884 8 C -0.002 4.002 9 N -0.334 5.334 10 C 0.344 3.656 11 O -0.419 6.419 12 C -0.210 4.210 13 H 0.169 0.831 14 C -0.180 4.180 15 C 0.185 3.815 16 F -0.132 7.132 17 F -0.134 7.134 18 C -0.060 4.060 19 C 0.075 3.925 20 H 0.086 0.914 21 N -0.340 5.340 22 C -0.378 4.378 23 H 0.088 0.912 24 C -0.202 4.202 25 N -0.570 5.570 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.218 1.218 29 H -0.219 1.219 30 C -0.198 4.198 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.218 0.782 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.225 0.775 42 H 0.066 0.934 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.645 -10.528 -7.583 17.434 hybrid contribution -0.262 0.032 1.056 1.088 sum -11.907 -10.496 -6.527 17.163 Atomic orbital electron populations 1.21963 0.77187 1.04221 1.03333 1.45352 1.07247 1.07108 1.55504 1.24984 0.85502 0.93440 1.06581 1.70212 1.18847 1.11394 1.17909 1.20102 0.92622 0.90457 1.05897 1.20767 0.94352 0.91465 0.98527 0.88355 1.21944 0.96932 0.86130 0.95167 1.48358 1.49340 1.05008 1.30694 1.18722 0.81352 0.81244 0.84320 1.90689 1.44688 1.76584 1.29979 1.23701 0.98272 0.95973 1.03065 0.83121 1.24309 0.94801 0.92847 1.06053 1.19658 0.80235 1.06114 0.75455 1.93073 1.93821 1.93472 1.32812 1.93068 1.56620 1.94722 1.69017 1.23727 0.97719 0.96977 0.87548 1.21250 0.93157 0.87703 0.90395 0.91449 1.42234 1.49397 1.38029 1.04335 1.19222 1.21133 1.14790 0.82609 0.91187 1.24738 0.99470 0.98373 0.97651 1.69682 1.30387 1.23262 1.33704 0.86170 0.77244 0.77403 0.85613 1.20610 1.21794 1.21865 1.22330 0.90987 0.92276 1.14194 0.90796 0.89709 0.89988 0.78225 0.91199 0.91204 0.85083 0.84749 0.90607 0.90857 0.77504 0.93438 0.81337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 11.18 59.85 0.67 1.20 16 2 N -0.47 -5.70 3.15 -126.00 -0.40 -6.09 16 3 C 0.18 2.53 12.56 -90.37 -1.14 1.39 16 4 N -0.47 -8.67 11.25 -10.87 -0.12 -8.80 16 5 C 0.04 0.67 6.15 -82.85 -0.51 0.16 16 6 C -0.03 -0.51 3.12 -89.94 -0.28 -0.79 16 7 H 0.10 1.80 8.00 -51.93 -0.42 1.38 16 8 C 0.12 1.80 6.40 -3.06 -0.02 1.78 16 9 N -0.60 -9.19 3.33 -170.52 -0.57 -9.75 16 10 C 0.56 8.41 7.27 -10.98 -0.08 8.33 16 11 O -0.54 -9.38 16.58 5.56 0.09 -9.29 16 12 C -0.19 -2.26 5.52 -91.76 -0.51 -2.77 16 13 H 0.15 1.56 7.07 -51.93 -0.37 1.20 16 14 C -0.14 -1.35 10.02 -26.69 -0.27 -1.62 16 15 C 0.22 2.78 5.20 -26.69 -0.14 2.64 16 16 F -0.15 -2.24 17.13 2.25 0.04 -2.20 16 17 F -0.15 -1.98 17.60 2.25 0.04 -1.95 16 18 C 0.07 1.09 6.39 -2.53 -0.02 1.07 16 19 C 0.19 3.56 3.15 -65.78 -0.21 3.35 16 20 H 0.07 1.32 7.99 -51.93 -0.41 0.90 16 21 N -0.70 -16.80 5.24 -51.35 -0.27 -17.07 16 22 C -0.25 -6.56 9.96 -15.06 -0.15 -6.71 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 25 N -0.92 -27.44 13.06 55.49 0.72 -26.71 16 26 Si 0.90 21.94 29.55 -169.99 -5.02 16.92 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 C -0.07 -0.92 10.56 -16.56 -0.17 -1.10 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.20 2.09 8.06 -52.49 -0.42 1.67 16 35 H 0.07 0.96 5.93 -51.93 -0.31 0.65 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.13 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.13 1.30 7.67 -51.93 -0.40 0.91 16 39 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.07 1.12 7.00 -51.93 -0.36 0.75 16 41 H 0.39 10.22 7.76 -40.82 -0.32 9.91 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.17 1.97 6.88 -52.49 -0.36 1.61 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -34.63 372.54 -8.23 -42.87 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -5.45 Total: 9.76 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -2.91 Total: 6.70 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.63 Total: -68.42 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.08 Total: -4.15 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.63 -8.23 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070490225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.048 kcal (2) G-P(sol) polarization free energy of solvation -34.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds