Wall clock time and date at job start Sat Apr 11 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35047 * 126.39745 * 2 1 4 4 N 1.30500 * 108.69638 * 179.76158 * 3 2 1 5 5 C 1.34125 * 109.25969 * 0.38572 * 4 3 2 6 6 C 1.50703 * 125.98969 * 179.87474 * 5 4 3 7 7 H 1.08996 * 110.78013 * 331.46101 * 6 5 4 8 8 C 1.54319 * 110.71790 * 208.21182 * 6 5 4 9 9 N 1.47028 * 107.26947 * 219.44512 * 8 6 5 10 10 C 1.34775 * 125.64330 * 178.89884 * 9 8 6 11 11 O 1.21273 * 120.00567 * 359.97438 * 10 9 8 12 12 C 1.50704 * 119.99416 * 180.02562 * 10 9 8 13 13 H 1.09000 * 115.55345 * 34.41246 * 12 10 9 14 14 C 1.53003 * 117.49753 * 180.09052 * 12 10 9 15 15 C 1.53009 * 117.49376 * 248.74364 * 12 10 9 16 16 F 1.39895 * 117.49980 * 0.02562 * 15 12 10 17 17 F 1.39900 * 117.49243 * 145.02337 * 15 12 10 18 18 C 1.47419 * 108.70371 * 358.94679 * 9 8 6 19 19 C 1.54912 * 104.83391 * 24.12534 * 18 9 8 20 20 H 1.08995 * 111.03512 * 81.08074 * 19 18 9 21 21 N 1.46498 * 111.00363 * 204.91815 * 19 18 9 22 22 C 1.36943 * 119.99752 * 266.91804 * 21 19 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 19 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 19 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47159 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47290 * 120.00044 * 26 24 22 29 29 H 1.48503 * 109.47163 * 240.00049 * 26 24 22 30 30 C 1.34672 * 108.01807 * 359.61916 * 5 4 3 31 31 H 1.08993 * 109.47254 * 269.99891 * 1 2 3 32 32 H 1.08999 * 109.46775 * 29.99697 * 1 2 3 33 33 H 1.08997 * 109.46751 * 149.99397 * 1 2 3 34 34 H 1.07995 * 125.65048 * 0.02562 * 3 2 1 35 35 H 1.08999 * 109.88838 * 338.86845 * 8 6 5 36 36 H 1.09006 * 109.87996 * 99.88252 * 8 6 5 37 37 H 1.09002 * 117.49657 * 214.97598 * 14 12 10 38 38 H 1.08997 * 117.49926 * 359.96587 * 14 12 10 39 39 H 1.09002 * 110.36625 * 265.29189 * 18 9 8 40 40 H 1.08996 * 110.36984 * 142.96546 * 18 9 8 41 41 H 0.97001 * 120.00384 * 87.20160 * 21 19 18 42 42 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 43 43 H 1.08000 * 126.58746 * 180.25352 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6902 0.0051 5 6 3.5461 -0.6505 0.0001 6 6 4.7891 -1.5026 0.0007 7 1 5.6158 -0.9809 -0.4815 8 6 4.5224 -2.8577 -0.6877 9 7 5.2330 -3.8871 0.0849 10 6 5.2329 -5.2084 -0.1808 11 8 4.6078 -5.6365 -1.1278 12 6 6.0087 -6.1541 0.6996 13 1 6.0450 -5.8897 1.7564 14 6 5.9706 -7.6418 0.3444 15 6 7.2432 -6.8279 0.0970 16 9 7.5656 -6.5186 -1.2286 17 9 8.3319 -7.0580 0.9450 18 6 5.9447 -3.2348 1.1991 19 6 5.1700 -1.9164 1.4468 20 1 4.2795 -2.0934 2.0500 21 7 6.0323 -0.9101 2.0711 22 6 6.0660 -0.7882 3.4347 23 1 5.4603 -1.4370 4.0500 24 6 6.8787 0.1692 4.0261 25 7 7.6165 0.9602 3.2762 26 14 6.9253 0.3350 5.8861 27 1 6.0117 -0.6648 6.4952 28 1 8.3094 0.0992 6.3696 29 1 6.4921 1.7019 6.2723 30 6 2.2772 -1.1018 -0.0001 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5139 34 1 1.9335 2.1144 0.0004 35 1 3.4530 -3.0683 -0.6902 36 1 4.8978 -2.8339 -1.7108 37 1 5.9822 -8.3562 1.1676 38 1 5.3840 -7.9367 -0.5257 39 1 6.9759 -3.0216 0.9174 40 1 5.9159 -3.8646 2.0882 41 1 6.5763 -0.3273 1.5185 42 1 8.1847 1.6290 3.6894 43 1 1.9613 -2.1345 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070490225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:14 Heat of formation + Delta-G solvation = -28.576596 kcal Electronic energy + Delta-G solvation = -29874.466229 eV Core-core repulsion = 25399.803843 eV Total energy + Delta-G solvation = -4474.662386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.80007 -48.49037 -42.96799 -41.22962 -39.10823 -36.59413 -35.85752 -35.02464 -33.37488 -32.31888 -29.65153 -28.96009 -27.78939 -26.26674 -25.45536 -23.64774 -23.58119 -22.35443 -22.00317 -20.66164 -20.36079 -19.27742 -19.15190 -18.23340 -18.05661 -17.59921 -17.14431 -16.86397 -16.44790 -16.38141 -16.15244 -15.42312 -15.33722 -15.13487 -14.94846 -14.85365 -14.75280 -14.66784 -14.54834 -14.32027 -13.98381 -13.92115 -13.50847 -13.34870 -13.23552 -13.05903 -12.92379 -12.64267 -12.46302 -12.26160 -12.09234 -11.79096 -11.75790 -11.41491 -11.07340 -10.95943 -10.72229 -10.36581 -9.78511 -9.30371 -8.92531 -7.89670 -5.19344 1.02648 1.17909 1.49235 1.49736 1.59279 1.68941 1.96660 2.06035 2.24309 2.31400 2.57806 3.07767 3.14294 3.39501 3.42524 3.49588 3.73086 3.82466 3.87848 4.02463 4.09044 4.10694 4.27375 4.33470 4.40436 4.44643 4.49991 4.57494 4.60451 4.67576 4.75442 4.76568 4.81080 4.91463 5.01619 5.10764 5.33168 5.38612 5.55027 5.85607 6.29002 6.35059 6.41542 6.91442 7.30649 7.36863 8.08895 8.33224 9.33603 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007311 B = 0.004431 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3829.034832 B = 6317.660426 C = 9399.076378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.460 5.460 3 C 0.174 3.826 4 N -0.530 5.530 5 C 0.000 4.000 6 C -0.019 4.019 7 H 0.071 0.929 8 C 0.129 3.871 9 N -0.602 5.602 10 C 0.555 3.445 11 O -0.563 6.563 12 C -0.197 4.197 13 H 0.170 0.830 14 C -0.105 4.105 15 C 0.200 3.800 16 F -0.172 7.172 17 F -0.159 7.159 18 C 0.083 3.917 19 C 0.187 3.813 20 H 0.065 0.935 21 N -0.714 5.714 22 C -0.236 4.236 23 H 0.080 0.920 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.968 3.032 27 H -0.263 1.263 28 H -0.294 1.294 29 H -0.299 1.299 30 C -0.052 4.052 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.231 0.769 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.171 0.829 38 H 0.135 0.865 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.535 -12.930 -6.471 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.143 5.143 3 C -0.108 4.108 4 N -0.249 5.249 5 C -0.129 4.129 6 C -0.040 4.040 7 H 0.090 0.910 8 C 0.006 3.994 9 N -0.334 5.334 10 C 0.343 3.657 11 O -0.443 6.443 12 C -0.219 4.219 13 H 0.187 0.813 14 C -0.143 4.143 15 C 0.162 3.838 16 F -0.152 7.152 17 F -0.139 7.139 18 C -0.043 4.043 19 C 0.075 3.925 20 H 0.083 0.917 21 N -0.351 5.351 22 C -0.368 4.368 23 H 0.098 0.902 24 C -0.263 4.263 25 N -0.616 5.616 26 Si 0.797 3.203 27 H -0.187 1.187 28 H -0.222 1.222 29 H -0.227 1.227 30 C -0.186 4.186 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.119 0.881 34 H 0.247 0.753 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.189 0.811 38 H 0.153 0.847 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -14.371 -12.707 -6.800 20.352 hybrid contribution 0.438 0.679 0.704 1.072 sum -13.932 -12.028 -6.097 19.389 Atomic orbital electron populations 1.22359 0.73753 1.06471 1.04690 1.45625 1.09186 1.05870 1.53588 1.25509 0.84854 0.95115 1.05364 1.70110 1.21768 1.12661 1.20331 1.20177 0.93645 0.90364 1.08754 1.20532 0.94135 0.92440 0.96872 0.91021 1.21881 0.97875 0.84941 0.94740 1.48354 1.49293 1.05416 1.30313 1.19208 0.81045 0.81111 0.84286 1.90677 1.45762 1.76803 1.31053 1.23791 0.97734 0.97144 1.03232 0.81264 1.24508 0.91109 0.91653 1.06992 1.20054 0.80716 1.08357 0.74632 1.93027 1.94042 1.93845 1.34308 1.93054 1.57027 1.94814 1.69000 1.23299 0.96376 0.96006 0.88632 1.21361 0.92322 0.87548 0.91267 0.91694 1.42336 1.50087 1.39148 1.03577 1.19618 1.19596 1.13652 0.83907 0.90233 1.25508 1.00153 0.98903 1.01738 1.69850 1.31993 1.24489 1.35292 0.85158 0.77121 0.77101 0.80873 1.18669 1.22164 1.22714 1.22606 0.90197 0.93680 1.12110 0.89785 0.87283 0.88103 0.75273 0.89461 0.91307 0.81113 0.84693 0.92185 0.89093 0.79355 0.94214 0.78901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.70 11.18 127.77 1.43 2.13 16 2 N -0.46 -10.20 3.15 -552.55 -1.74 -11.94 16 3 C 0.17 4.82 12.56 180.26 2.26 7.08 16 4 N -0.53 -20.16 11.25 -188.31 -2.12 -22.28 16 5 C 0.00 -0.01 6.15 41.39 0.25 0.25 16 6 C -0.02 -0.65 3.12 -10.35 -0.03 -0.68 16 7 H 0.07 2.83 8.00 -2.39 -0.02 2.81 16 8 C 0.13 3.77 6.40 86.73 0.56 4.33 16 9 N -0.60 -17.83 3.33 -811.80 -2.70 -20.53 16 10 C 0.55 15.89 7.27 87.66 0.64 16.53 16 11 O -0.56 -18.65 16.58 -3.01 -0.05 -18.70 16 12 C -0.20 -4.28 5.52 -11.53 -0.06 -4.34 16 13 H 0.17 2.99 7.07 -2.39 -0.02 2.97 16 14 C -0.11 -1.65 10.02 30.62 0.31 -1.34 16 15 C 0.20 4.66 5.20 30.62 0.16 4.82 16 16 F -0.17 -5.02 17.13 44.97 0.77 -4.25 16 17 F -0.16 -3.86 17.60 44.97 0.79 -3.07 16 18 C 0.08 2.69 6.39 86.86 0.55 3.24 16 19 C 0.19 7.11 3.15 46.39 0.15 7.26 16 20 H 0.07 2.51 7.99 -2.39 -0.02 2.49 16 21 N -0.71 -35.21 5.24 -316.37 -1.66 -36.87 16 22 C -0.24 -12.66 9.96 84.03 0.84 -11.83 16 23 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 24 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 25 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 26 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 27 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 28 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 29 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 30 C -0.05 -1.37 10.56 83.09 0.88 -0.50 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 34 H 0.23 4.46 8.06 -2.91 -0.02 4.44 16 35 H 0.09 2.26 5.93 -2.39 -0.01 2.24 16 36 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.17 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.13 2.20 7.67 -2.39 -0.02 2.18 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.09 2.63 7.00 -2.39 -0.02 2.61 16 41 H 0.37 20.68 7.76 -92.71 -0.72 19.96 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.19 3.94 6.88 -2.91 -0.02 3.92 16 Total: -1.00 -78.32 372.54 4.34 -73.98 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.34 Total: 31.77 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 8.39 Total: 23.42 kcal Atomic # 7 Polarization: -142.84 SS G_CDS: -7.94 Total: -150.77 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 1.56 Total: -7.32 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -78.32 4.34 -73.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070490225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.406 kcal (2) G-P(sol) polarization free energy of solvation -78.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds