Wall clock time and date at job start Sat Apr 11 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35042 * 126.39596 * 2 1 4 4 N 1.30501 * 108.70034 * 180.02562 * 3 2 1 5 5 C 1.34122 * 109.25381 * 359.75409 * 4 3 2 6 6 C 1.34674 * 108.02225 * 0.40015 * 5 4 3 7 7 C 1.50699 * 126.58970 * 179.87536 * 6 5 4 8 8 H 1.09003 * 110.77514 * 201.44692 * 7 6 5 9 9 C 1.54324 * 110.72059 * 78.21518 * 7 6 5 10 10 N 1.47025 * 107.26647 * 219.44440 * 9 7 6 11 11 C 1.34777 * 125.64618 * 178.99695 * 10 9 7 12 12 O 1.21282 * 119.99967 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00281 * 179.97438 * 11 10 9 14 14 H 1.09003 * 115.54717 * 34.32027 * 13 11 10 15 15 C 1.52991 * 117.50223 * 180.02562 * 13 11 10 16 16 C 1.52995 * 60.00382 * 107.48801 * 15 13 11 17 17 F 1.39901 * 117.49960 * 252.51125 * 16 15 13 18 18 F 1.39901 * 117.49887 * 107.49009 * 16 15 13 19 19 C 1.47461 * 108.72497 * 358.96721 * 10 9 7 20 20 C 1.54915 * 104.81211 * 24.07584 * 19 10 9 21 21 H 1.09004 * 111.00182 * 81.13182 * 20 19 10 22 22 N 1.46499 * 111.00683 * 204.94837 * 20 19 10 23 23 C 1.36939 * 119.99933 * 270.69281 * 22 20 19 24 24 H 1.08001 * 119.99700 * 359.72658 * 23 22 20 25 25 C 1.38810 * 120.00095 * 179.71972 * 23 22 20 26 26 N 1.31624 * 119.99740 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00044 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47173 * 60.00435 * 27 25 23 29 29 H 1.48497 * 109.47172 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.47132 * 300.00314 * 27 25 23 31 31 H 1.08994 * 109.46837 * 269.99816 * 1 2 3 32 32 H 1.09000 * 109.47081 * 29.99847 * 1 2 3 33 33 H 1.08996 * 109.46864 * 149.99855 * 1 2 3 34 34 H 1.08005 * 125.65149 * 0.02562 * 3 2 1 35 35 H 1.08005 * 125.99231 * 180.25780 * 5 4 3 36 36 H 1.09001 * 109.88271 * 338.85548 * 9 7 6 37 37 H 1.08992 * 109.88496 * 99.86790 * 9 7 6 38 38 H 1.09008 * 117.49614 * 214.98258 * 15 13 11 39 39 H 1.09005 * 117.50028 * 359.97438 * 15 13 11 40 40 H 1.08999 * 110.35140 * 265.26032 * 19 10 9 41 41 H 1.09004 * 110.40711 * 142.92001 * 19 10 9 42 42 H 0.97001 * 119.99790 * 90.41254 * 22 20 19 43 43 H 0.96998 * 119.99409 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 -0.0006 5 6 3.5461 -0.6504 0.0045 6 6 2.2773 -1.1018 -0.0006 7 6 1.8364 -2.5428 -0.0003 8 1 0.8180 -2.6357 -0.3775 9 6 1.9521 -3.1490 1.4142 10 7 2.4509 -4.5235 1.2605 11 6 2.7059 -5.3836 2.2663 12 8 2.5251 -5.0427 3.4162 13 6 3.2156 -6.7688 1.9623 14 1 3.8774 -6.8474 1.0998 15 6 3.4854 -7.6982 3.1473 16 6 2.2768 -7.9442 2.2420 17 9 1.0110 -7.6507 2.7604 18 9 2.3338 -9.0378 1.3714 19 6 2.6254 -4.8059 -0.1763 20 6 2.8120 -3.4155 -0.8334 21 1 3.8389 -3.0664 -0.7241 22 7 2.4173 -3.4440 -2.2439 23 6 3.3377 -3.7637 -3.2061 24 1 4.3556 -3.9906 -2.9255 25 6 2.9623 -3.7964 -4.5421 26 7 1.7218 -3.5195 -4.8840 27 14 4.2180 -4.2319 -5.8547 28 1 4.7500 -5.5944 -5.5982 29 1 3.5703 -4.1963 -7.1905 30 1 5.3321 -3.2506 -5.8189 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5138 34 1 1.9335 2.1145 0.0004 35 1 4.4369 -1.2611 0.0093 36 1 2.6525 -2.5652 2.0115 37 1 0.9738 -3.1586 1.8945 38 1 4.3250 -8.3884 3.0646 39 1 3.2946 -7.3076 4.1469 40 1 1.7391 -5.2985 -0.5761 41 1 3.5090 -5.4234 -0.3377 42 1 1.5030 -3.2403 -2.4958 43 1 1.4596 -3.5420 -5.8176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070645428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:22 Heat of formation + Delta-G solvation = -10.747115 kcal Electronic energy + Delta-G solvation = -30139.188988 eV Core-core repulsion = 25665.299746 eV Total energy + Delta-G solvation = -4473.889242 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.85323 -47.52529 -41.92137 -40.06675 -37.88172 -35.64184 -34.22488 -33.85692 -32.34834 -30.77133 -28.17845 -27.63019 -26.85538 -25.19511 -23.84101 -22.75970 -22.40841 -21.68864 -20.47913 -19.35578 -19.32574 -18.24561 -17.56261 -17.20314 -16.79709 -16.52823 -16.19358 -15.72982 -15.46332 -15.22104 -14.58946 -14.41071 -14.16534 -13.86740 -13.82075 -13.70924 -13.56370 -13.39495 -13.14895 -13.09333 -12.93102 -12.74676 -12.66335 -12.41143 -12.29716 -11.69134 -11.61096 -11.35967 -10.97646 -10.89298 -10.58892 -10.43638 -10.22500 -10.00963 -9.83957 -9.68684 -9.34785 -9.13262 -8.58608 -8.04308 -7.19568 -5.93107 -3.24533 2.06340 2.23193 2.70506 2.85435 2.98692 3.27132 3.36347 3.41754 3.42059 3.44630 3.97106 4.09235 4.37145 4.43724 4.60515 4.70876 4.76782 4.85041 4.89675 4.93781 5.10527 5.19326 5.28838 5.34587 5.39270 5.44636 5.48462 5.53732 5.61881 5.64355 5.78740 5.93468 6.02011 6.12774 6.15075 6.27085 6.52535 6.69123 7.00000 7.39536 7.49668 7.55994 8.05792 8.23079 8.31877 9.35861 9.85653 10.20395 11.28630 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007575 B = 0.004532 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3695.719543 B = 6176.279765 C = 8944.698208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.458 5.458 3 C 0.172 3.828 4 N -0.494 5.494 5 C -0.014 4.014 6 C 0.006 3.994 7 C -0.037 4.037 8 H 0.090 0.910 9 C 0.125 3.875 10 N -0.603 5.603 11 C 0.558 3.442 12 O -0.538 6.538 13 C -0.188 4.188 14 H 0.152 0.848 15 C -0.141 4.141 16 C 0.223 3.777 17 F -0.152 7.152 18 F -0.154 7.154 19 C 0.067 3.933 20 C 0.188 3.812 21 H 0.076 0.924 22 N -0.705 5.705 23 C -0.250 4.250 24 H 0.074 0.926 25 C -0.004 4.004 26 N -0.929 5.929 27 Si 0.908 3.092 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.201 0.799 35 H 0.166 0.834 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 -1.313 14.073 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.141 5.141 3 C -0.110 4.110 4 N -0.212 5.212 5 C -0.162 4.162 6 C -0.109 4.109 7 C -0.058 4.058 8 H 0.109 0.891 9 C 0.002 3.998 10 N -0.336 5.336 11 C 0.345 3.655 12 O -0.416 6.416 13 C -0.210 4.210 14 H 0.170 0.830 15 C -0.179 4.179 16 C 0.185 3.815 17 F -0.132 7.132 18 F -0.134 7.134 19 C -0.059 4.059 20 C 0.074 3.926 21 H 0.094 0.906 22 N -0.344 5.344 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.201 4.201 26 N -0.576 5.576 27 Si 0.738 3.262 28 H -0.210 1.210 29 H -0.216 1.216 30 H -0.210 1.210 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.217 0.783 35 H 0.183 0.817 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.220 0.780 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.164 -0.685 14.550 14.613 hybrid contribution -0.708 -0.792 -1.278 1.662 sum -1.871 -1.477 13.272 13.485 Atomic orbital electron populations 1.22022 0.77008 1.04959 1.03162 1.45211 1.07392 1.06742 1.54796 1.24791 0.85791 0.93193 1.07188 1.70236 1.19352 1.12125 1.19461 1.21935 0.95762 0.90778 1.07678 1.20710 0.91108 0.88472 1.10607 1.20886 1.01637 0.88161 0.95114 0.89148 1.21895 0.99646 0.81817 0.96448 1.48339 1.63996 1.13629 1.07597 1.18741 0.78036 0.84546 0.84208 1.90703 1.53275 1.77623 1.20015 1.23695 1.02684 0.90672 1.03960 0.83044 1.24305 0.96713 0.99327 0.97598 1.19652 0.80120 0.86951 0.94760 1.93072 1.41063 1.92911 1.86200 1.93070 1.96343 1.54126 1.69857 1.23711 1.02091 1.02498 0.77591 1.21314 0.96539 0.89408 0.85298 0.90593 1.42225 1.11574 1.82074 0.98513 1.19161 0.91992 1.40215 0.86702 0.90851 1.24747 0.96421 1.01703 0.97220 1.69641 1.16258 1.54634 1.17064 0.86264 0.80463 0.78336 0.81099 1.21048 1.21646 1.21022 0.90759 0.89525 0.89428 0.78281 0.81690 0.90756 0.91510 0.84993 0.84715 0.90648 0.90510 0.77952 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 11.00 59.85 0.66 1.32 16 2 N -0.46 -6.15 3.15 -121.36 -0.38 -6.53 16 3 C 0.17 2.39 12.56 -90.38 -1.14 1.25 16 4 N -0.49 -8.48 11.25 -14.66 -0.16 -8.64 16 5 C -0.01 -0.23 11.02 -17.81 -0.20 -0.43 16 6 C 0.01 0.09 5.80 -81.60 -0.47 -0.39 16 7 C -0.04 -0.54 2.88 -89.94 -0.26 -0.80 16 8 H 0.09 1.32 6.97 -51.93 -0.36 0.96 16 9 C 0.13 1.75 6.45 -3.06 -0.02 1.73 16 10 N -0.60 -8.76 3.33 -170.48 -0.57 -9.33 16 11 C 0.56 8.21 7.27 -10.98 -0.08 8.13 16 12 O -0.54 -9.27 16.58 5.56 0.09 -9.17 16 13 C -0.19 -2.19 5.52 -91.77 -0.51 -2.69 16 14 H 0.15 1.50 7.07 -51.93 -0.37 1.13 16 15 C -0.14 -1.31 10.01 -26.74 -0.27 -1.58 16 16 C 0.22 2.68 5.20 -26.73 -0.14 2.54 16 17 F -0.15 -2.17 17.13 2.25 0.04 -2.13 16 18 F -0.15 -1.91 17.60 2.25 0.04 -1.87 16 19 C 0.07 1.02 6.39 -2.51 -0.02 1.01 16 20 C 0.19 3.23 3.05 -65.78 -0.20 3.03 16 21 H 0.08 1.35 6.57 -51.93 -0.34 1.01 16 22 N -0.70 -15.55 5.26 -51.35 -0.27 -15.82 16 23 C -0.25 -6.30 9.97 -15.06 -0.15 -6.45 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 26 N -0.93 -26.27 13.06 55.49 0.72 -25.54 16 27 Si 0.91 21.27 29.55 -169.99 -5.02 16.24 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.84 7.13 -51.93 -0.37 0.47 16 34 H 0.20 1.92 8.06 -52.48 -0.42 1.50 16 35 H 0.17 2.68 7.16 -52.48 -0.38 2.31 16 36 H 0.07 1.08 7.81 -51.93 -0.41 0.67 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.13 0.82 8.14 -51.92 -0.42 0.39 16 39 H 0.13 1.28 7.67 -51.93 -0.40 0.89 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.10 7.01 -51.93 -0.36 0.74 16 42 H 0.39 9.18 7.73 -40.82 -0.32 8.86 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -32.71 370.88 -8.19 -40.89 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.38 Total: 9.85 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: -2.88 Total: 6.47 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: -0.66 Total: -65.86 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.08 Total: -4.01 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.71 -8.19 -40.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070645428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.145 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds