Wall clock time and date at job start Sat Apr 11 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35043 * 126.39424 * 2 1 4 4 N 1.30505 * 108.69752 * 179.73802 * 3 2 1 5 5 C 1.34124 * 109.25474 * 0.26816 * 4 3 2 6 6 C 1.34661 * 108.02302 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.59310 * 180.02562 * 6 5 4 8 8 H 1.08998 * 110.64572 * 206.66775 * 7 6 5 9 9 C 1.54330 * 110.71667 * 83.52417 * 7 6 5 10 10 N 1.47019 * 107.27151 * 219.44298 * 9 7 6 11 11 C 1.34777 * 125.64863 * 178.90591 * 10 9 7 12 12 O 1.21272 * 120.00221 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99802 * 180.02562 * 11 10 9 14 14 H 1.09003 * 115.55160 * 34.33356 * 13 11 10 15 15 C 1.53000 * 117.49883 * 248.61887 * 13 11 10 16 16 C 1.52997 * 60.00120 * 252.51073 * 15 13 11 17 17 F 1.39896 * 117.50101 * 252.50837 * 16 15 13 18 18 F 1.39906 * 117.49720 * 107.49021 * 16 15 13 19 19 C 1.47429 * 108.70532 * 358.94437 * 10 9 7 20 20 C 1.54912 * 104.83021 * 24.12510 * 19 10 9 21 21 H 1.09005 * 111.00333 * 81.06855 * 20 19 10 22 22 N 1.46501 * 111.00457 * 204.91332 * 20 19 10 23 23 C 1.36932 * 120.00476 * 267.19745 * 22 20 19 24 24 H 1.07999 * 119.99796 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00165 * 180.02562 * 23 22 20 26 26 N 1.31621 * 119.99790 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99975 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47192 * 89.99587 * 27 25 23 29 29 H 1.48499 * 109.47163 * 209.99654 * 27 25 23 30 30 H 1.48502 * 109.46895 * 329.99863 * 27 25 23 31 31 H 1.09004 * 109.47018 * 90.02383 * 1 2 3 32 32 H 1.09006 * 109.46910 * 210.01872 * 1 2 3 33 33 H 1.08997 * 109.47253 * 330.02011 * 1 2 3 34 34 H 1.08002 * 125.65373 * 0.02562 * 3 2 1 35 35 H 1.08008 * 125.98469 * 179.97438 * 5 4 3 36 36 H 1.08993 * 109.88218 * 338.86392 * 9 7 6 37 37 H 1.09004 * 109.88100 * 99.87882 * 9 7 6 38 38 H 1.09000 * 117.49861 * 0.02562 * 15 13 11 39 39 H 1.09004 * 117.49710 * 145.02348 * 15 13 11 40 40 H 1.09002 * 110.36950 * 142.95864 * 19 10 9 41 41 H 1.08998 * 110.36567 * 265.18043 * 19 10 9 42 42 H 0.96999 * 119.99252 * 87.20276 * 22 20 19 43 43 H 0.96997 * 119.99742 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6903 0.0057 5 6 3.5460 -0.6504 0.0035 6 6 2.2773 -1.1017 -0.0032 7 6 1.8364 -2.5428 -0.0072 8 1 0.8546 -2.6430 -0.4698 9 6 1.8255 -3.1144 1.4263 10 7 2.3341 -4.4917 1.3510 11 6 2.4994 -5.3263 2.3962 12 8 2.2187 -4.9576 3.5169 13 6 3.0332 -6.7177 2.1724 14 1 3.7683 -6.8164 1.3736 15 6 2.0732 -7.8874 2.3981 16 6 3.1982 -7.6169 3.3992 17 9 4.2805 -8.5032 3.4096 18 9 2.8419 -7.0846 4.6430 19 6 2.6343 -4.8085 -0.0573 20 6 2.8812 -3.4345 -0.7288 21 1 3.8947 -3.0823 -0.5368 22 7 2.6133 -3.4976 -2.1678 23 6 3.6310 -3.7703 -3.0424 24 1 4.6312 -3.9392 -2.6714 25 6 3.3773 -3.8295 -4.4058 26 7 2.1583 -3.6242 -4.8579 27 14 4.7656 -4.2022 -5.5989 28 1 4.8608 -5.6697 -5.8048 29 1 4.4936 -3.5367 -6.8983 30 1 6.0459 -3.6963 -5.0421 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8899 0.5142 33 1 -0.3633 0.8901 0.5135 34 1 1.9334 2.1145 0.0004 35 1 4.4369 -1.2610 0.0066 36 1 2.4707 -2.5156 2.0690 37 1 0.8083 -3.1134 1.8180 38 1 1.0554 -7.6506 2.7082 39 1 2.1765 -8.7560 1.7476 40 1 3.5276 -5.4295 -0.1244 41 1 1.7868 -5.3127 -0.5216 42 1 1.7150 -3.3462 -2.5009 43 1 1.9809 -3.6660 -5.8106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070645429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:24 Heat of formation + Delta-G solvation = -29.163725 kcal Electronic energy + Delta-G solvation = -29999.431488 eV Core-core repulsion = 25524.743642 eV Total energy + Delta-G solvation = -4474.687846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.71146 -48.38585 -43.05211 -41.22185 -39.08456 -36.64974 -35.89121 -34.89277 -33.72445 -32.37290 -29.40022 -29.03091 -27.73845 -26.35159 -25.50217 -23.77101 -23.35663 -22.99438 -21.67454 -20.60116 -20.39667 -19.30200 -19.17426 -18.05248 -17.85738 -17.64083 -17.16397 -16.93974 -16.54770 -16.33533 -16.13924 -15.62931 -15.33873 -15.10975 -15.01382 -14.82503 -14.61456 -14.51611 -14.40758 -14.19583 -14.06797 -13.81984 -13.63057 -13.46995 -13.41813 -13.11010 -12.94020 -12.65544 -12.63417 -12.30537 -12.15537 -11.79973 -11.78836 -11.30117 -11.03601 -10.94194 -10.87105 -10.42233 -9.79448 -9.27574 -8.99988 -7.92892 -5.21101 1.08881 1.16419 1.50911 1.53299 1.59236 1.61376 1.96349 2.01053 2.23348 2.25619 2.58079 3.07053 3.18665 3.36513 3.49931 3.53549 3.62002 3.70658 3.83684 3.90480 4.02407 4.09419 4.20843 4.31447 4.41369 4.45976 4.48275 4.52764 4.56564 4.62244 4.71781 4.75528 4.77090 4.92526 4.97561 5.08081 5.25153 5.45680 5.58044 5.80427 6.27347 6.34059 6.38385 6.93728 7.16771 7.37299 8.05178 8.29996 9.29644 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007953 B = 0.004141 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3519.719091 B = 6759.296527 C = 9432.546856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.458 5.458 3 C 0.179 3.821 4 N -0.537 5.537 5 C -0.043 4.043 6 C -0.002 4.002 7 C -0.021 4.021 8 H 0.098 0.902 9 C 0.131 3.869 10 N -0.601 5.601 11 C 0.553 3.447 12 O -0.567 6.567 13 C -0.197 4.197 14 H 0.169 0.831 15 C -0.111 4.111 16 C 0.203 3.797 17 F -0.160 7.160 18 F -0.162 7.162 19 C 0.084 3.916 20 C 0.181 3.819 21 H 0.067 0.933 22 N -0.712 5.712 23 C -0.235 4.235 24 H 0.078 0.922 25 C -0.062 4.062 26 N -0.963 5.963 27 Si 0.960 3.040 28 H -0.284 1.284 29 H -0.302 1.302 30 H -0.275 1.275 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.241 0.759 35 H 0.155 0.845 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.169 0.831 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.377 0.623 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 -2.236 12.787 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.141 5.141 3 C -0.103 4.103 4 N -0.256 5.256 5 C -0.190 4.190 6 C -0.118 4.118 7 C -0.042 4.042 8 H 0.116 0.884 9 C 0.007 3.993 10 N -0.333 5.333 11 C 0.341 3.659 12 O -0.447 6.447 13 C -0.218 4.218 14 H 0.187 0.813 15 C -0.148 4.148 16 C 0.166 3.834 17 F -0.140 7.140 18 F -0.143 7.143 19 C -0.042 4.042 20 C 0.069 3.931 21 H 0.085 0.915 22 N -0.350 5.350 23 C -0.367 4.367 24 H 0.096 0.904 25 C -0.255 4.255 26 N -0.613 5.613 27 Si 0.790 3.210 28 H -0.211 1.211 29 H -0.230 1.230 30 H -0.200 1.200 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.137 0.863 34 H 0.257 0.743 35 H 0.172 0.828 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.152 0.848 39 H 0.187 0.813 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.210 0.790 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.710 -1.584 13.393 14.646 hybrid contribution 0.078 -0.407 -0.974 1.058 sum -5.632 -1.991 12.419 13.781 Atomic orbital electron populations 1.22360 0.74280 1.06492 1.04591 1.45463 1.08994 1.05805 1.53791 1.25587 0.85029 0.94834 1.04841 1.70180 1.21659 1.12260 1.21456 1.21990 0.96483 0.91237 1.09312 1.20760 0.91052 0.89403 1.10576 1.20744 1.00925 0.87505 0.95042 0.88413 1.21835 0.99973 0.81780 0.95687 1.48311 1.63408 1.13776 1.07818 1.19287 0.77831 0.85665 0.83072 1.90760 1.52773 1.77413 1.23751 1.23678 1.06313 0.90945 1.00911 0.81348 1.24481 0.95858 0.98116 0.96374 1.19874 0.90537 0.93693 0.79277 1.93037 1.56256 1.68094 1.96637 1.93067 1.91330 1.86167 1.43711 1.23336 1.02051 1.00313 0.78473 1.21406 0.96710 0.91427 0.83539 0.91507 1.42253 1.08918 1.83975 0.99881 1.19532 0.90723 1.38470 0.87964 0.90401 1.25349 0.98179 1.03470 0.98509 1.69771 1.20351 1.58096 1.13126 0.85344 0.79477 0.77577 0.78582 1.21111 1.22958 1.19979 0.90181 0.88902 0.86254 0.74281 0.82788 0.92031 0.90108 0.84773 0.81335 0.89358 0.90198 0.78977 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.95 10.87 127.77 1.39 2.34 16 2 N -0.46 -11.38 3.15 -537.87 -1.70 -13.08 16 3 C 0.18 4.69 12.56 180.26 2.26 6.95 16 4 N -0.54 -18.61 11.25 -200.31 -2.25 -20.87 16 5 C -0.04 -1.51 11.01 83.52 0.92 -0.59 16 6 C 0.00 -0.06 5.85 40.95 0.24 0.18 16 7 C -0.02 -0.58 2.69 -10.35 -0.03 -0.61 16 8 H 0.10 2.62 7.68 -2.39 -0.02 2.60 16 9 C 0.13 3.40 6.45 86.73 0.56 3.96 16 10 N -0.60 -15.81 3.33 -811.78 -2.70 -18.51 16 11 C 0.55 15.27 7.63 87.66 0.67 15.94 16 12 O -0.57 -19.73 15.47 -3.01 -0.05 -19.77 16 13 C -0.20 -4.07 5.52 -11.54 -0.06 -4.13 16 14 H 0.17 2.83 7.07 -2.39 -0.02 2.81 16 15 C -0.11 -1.63 10.20 30.59 0.31 -1.31 16 16 C 0.20 4.55 5.19 30.59 0.16 4.71 16 17 F -0.16 -3.61 17.60 44.97 0.79 -2.82 16 18 F -0.16 -4.74 15.71 44.97 0.71 -4.03 16 19 C 0.08 2.26 6.39 86.86 0.55 2.81 16 20 C 0.18 5.95 3.03 46.38 0.14 6.09 16 21 H 0.07 2.37 6.40 -2.38 -0.02 2.35 16 22 N -0.71 -30.47 5.24 -316.37 -1.66 -32.13 16 23 C -0.24 -11.59 9.96 84.03 0.84 -10.75 16 24 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 25 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 26 N -0.96 -54.26 13.06 21.65 0.28 -53.97 16 27 Si 0.96 43.38 29.55 68.60 2.03 45.41 16 28 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 29 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 30 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.22 7.76 -2.38 -0.02 1.20 16 33 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.24 3.87 8.06 -2.91 -0.02 3.84 16 35 H 0.15 5.48 6.97 -2.91 -0.02 5.46 16 36 H 0.06 1.77 7.81 -2.39 -0.02 1.75 16 37 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.17 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.09 2.20 7.00 -2.39 -0.02 2.18 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.38 17.51 7.77 -92.71 -0.72 16.79 16 43 H 0.25 13.88 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -72.59 370.06 4.22 -68.38 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.34 Total: 28.62 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 8.42 Total: 22.77 kcal Atomic # 7 Polarization: -130.53 SS G_CDS: -8.03 Total: -138.56 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.77 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 1.50 Total: -6.85 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -72.59 4.22 -68.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070645429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.214 kcal (2) G-P(sol) polarization free energy of solvation -72.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds