Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.47078 * 2 1 4 4 N 1.28433 * 125.18423 * 275.19542 * 3 2 1 5 5 C 1.30839 * 110.97576 * 180.23961 * 4 3 2 6 6 C 1.39801 * 107.88099 * 359.75086 * 5 4 3 7 7 Cl 1.73595 * 127.34001 * 180.02562 * 6 5 4 8 8 C 1.36740 * 125.18774 * 95.00747 * 3 2 1 9 9 C 1.47040 * 126.90462 * 0.04266 * 8 3 2 10 10 O 1.21644 * 119.99808 * 260.88305 * 9 8 3 11 11 N 1.34776 * 119.99875 * 80.88194 * 9 8 3 12 12 C 1.46501 * 119.99832 * 184.23198 * 11 9 8 13 13 H 1.09009 * 109.49723 * 324.93846 * 12 11 9 14 14 C 1.53035 * 109.49999 * 204.84243 * 12 11 9 15 15 C 1.53033 * 109.54019 * 178.68324 * 14 12 11 16 16 C 1.52767 * 109.38518 * 61.24024 * 15 14 12 17 17 H 1.09003 * 109.43061 * 65.42217 * 16 15 14 18 18 C 1.52992 * 109.51076 * 185.70632 * 16 15 14 19 19 N 1.46924 * 109.00301 * 305.58939 * 16 15 14 20 20 C 1.36936 * 120.62867 * 233.58197 * 19 16 15 21 21 H 1.08004 * 120.00305 * 38.47390 * 20 19 16 22 22 C 1.38812 * 120.00371 * 218.47563 * 20 19 16 23 23 N 1.31628 * 119.99724 * 2.96389 * 22 20 19 24 24 Si 1.86796 * 120.00582 * 183.23950 * 22 20 19 25 25 H 1.48500 * 109.47110 * 89.99926 * 24 22 20 26 26 H 1.48494 * 109.47448 * 210.00058 * 24 22 20 27 27 H 1.48509 * 109.46882 * 330.00338 * 24 22 20 28 28 C 1.46923 * 118.74305 * 53.30993 * 19 16 15 29 29 H 1.09000 * 109.47396 * 60.00466 * 1 2 3 30 30 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47069 * 299.99827 * 1 2 3 32 32 H 1.08998 * 109.47573 * 240.00012 * 2 1 3 33 33 H 1.09001 * 109.47436 * 120.00086 * 2 1 3 34 34 H 1.08001 * 126.05771 * 179.79284 * 5 4 3 35 35 H 0.96999 * 119.99871 * 4.23852 * 11 9 8 36 36 H 1.09002 * 109.46004 * 298.70662 * 14 12 11 37 37 H 1.09003 * 109.46418 * 58.67226 * 14 12 11 38 38 H 1.09006 * 109.50028 * 181.31505 * 15 14 12 39 39 H 1.08998 * 109.50185 * 301.40875 * 15 14 12 40 40 H 1.09002 * 109.47470 * 179.52466 * 18 16 15 41 41 H 1.08997 * 109.47198 * 299.52715 * 18 16 15 42 42 H 1.09004 * 109.47451 * 59.52613 * 18 16 15 43 43 H 0.96991 * 119.99732 * 179.97438 * 23 22 20 44 44 H 1.08999 * 109.58870 * 66.42693 * 28 19 16 45 45 H 1.08996 * 109.58885 * 186.85837 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1754 2.1107 -1.0454 5 6 2.6304 3.2951 -0.7260 6 6 2.7774 3.3382 0.6636 7 17 3.3450 4.6699 1.6216 8 6 2.3730 2.0917 1.1133 9 6 2.3382 1.6244 2.5070 10 8 1.4038 1.9242 3.2259 11 7 3.3416 0.8640 2.9880 12 6 3.2630 0.3214 4.3465 13 1 2.7609 1.0384 4.9962 14 6 4.6752 0.0557 4.8730 15 6 4.5955 -0.4803 6.3042 16 6 3.8213 -1.7972 6.3100 17 1 4.3825 -2.5502 5.7567 18 6 3.6166 -2.2632 7.7528 19 7 2.5154 -1.5873 5.6703 20 6 1.3586 -1.9351 6.3152 21 1 1.2631 -1.7721 7.3786 22 6 0.3085 -2.4973 5.6023 23 7 0.4458 -2.7498 4.3178 24 14 -1.3021 -2.8882 6.4640 25 1 -2.2047 -1.7117 6.3839 26 1 -1.9465 -4.0522 5.8047 27 1 -1.0354 -3.2113 7.8888 28 6 2.4739 -0.9916 4.3279 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.8524 4.0976 -1.4139 35 1 4.1158 0.6760 2.4347 36 1 5.1676 -0.6796 4.2367 37 1 5.2466 0.9839 4.8644 38 1 5.6024 -0.6472 6.6868 39 1 4.0813 0.2440 6.9359 40 1 3.0568 -3.1985 7.7567 41 1 4.5864 -2.4183 8.2256 42 1 3.0607 -1.5049 8.3043 43 1 -0.2878 -3.1430 3.8198 44 1 2.9230 -1.6775 3.6096 45 1 1.4394 -0.7922 4.0484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071530967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = 51.326145 kcal Electronic energy + Delta-G solvation = -28643.363228 eV Core-core repulsion = 24723.962365 eV Total energy + Delta-G solvation = -3919.400863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.66988 -39.42485 -37.62460 -36.63616 -34.60684 -34.49374 -32.87563 -31.42869 -30.22362 -29.89388 -29.78064 -26.16839 -25.11098 -24.21485 -23.05600 -22.24404 -21.67575 -20.54264 -19.93501 -19.28797 -18.02746 -16.58979 -16.19956 -16.16495 -15.54858 -15.32912 -14.93604 -14.47694 -14.19352 -14.02622 -13.88070 -13.79396 -13.38858 -13.20967 -12.92934 -12.82751 -12.47027 -12.16664 -11.96272 -11.88166 -11.71326 -11.47045 -11.38176 -11.14116 -10.91126 -10.83858 -10.63960 -10.55708 -10.48643 -10.30644 -10.06841 -9.98843 -9.64438 -9.54129 -9.34753 -8.81324 -8.71495 -8.46441 -6.54027 -5.83410 -3.37766 1.44574 1.74401 2.34733 2.43460 2.90864 3.30524 3.37071 3.42876 3.43742 4.40106 4.45213 4.62698 4.85991 4.86796 5.14076 5.17498 5.26203 5.29834 5.31989 5.45168 5.50340 5.60591 5.62955 5.71119 5.92349 6.06688 6.08653 6.09689 6.23957 6.25404 6.36650 6.40867 6.44494 6.53510 6.59914 6.66366 6.79176 7.02043 7.11325 7.22215 7.60415 7.68141 7.80913 7.83903 8.32815 8.49870 9.19649 9.78777 10.39661 11.24818 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.004050 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.402400 B = 6912.361454 C = 8297.686389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.258 5.258 4 N -0.273 5.273 5 C 0.019 3.981 6 C -0.122 4.122 7 Cl -0.025 7.025 8 C -0.001 4.001 9 C 0.586 3.414 10 O -0.503 6.503 11 N -0.705 5.705 12 C 0.113 3.887 13 H 0.086 0.914 14 C -0.116 4.116 15 C -0.127 4.127 16 C 0.166 3.834 17 H 0.025 0.975 18 C -0.135 4.135 19 N -0.581 5.581 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.015 3.985 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.172 3.828 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.192 0.808 35 H 0.395 0.605 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.052 0.948 43 H 0.253 0.747 44 H 0.018 0.982 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.404 7.577 -8.624 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.047 5.047 4 N -0.104 5.104 5 C -0.159 4.159 6 C -0.160 4.160 7 Cl 0.004 6.996 8 C -0.132 4.132 9 C 0.367 3.633 10 O -0.376 6.376 11 N -0.356 5.356 12 C 0.008 3.992 13 H 0.104 0.896 14 C -0.154 4.154 15 C -0.166 4.166 16 C 0.059 3.941 17 H 0.043 0.957 18 C -0.192 4.192 19 N -0.305 5.305 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.184 4.184 23 N -0.544 5.544 24 Si 0.730 3.270 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.203 1.203 28 C 0.045 3.955 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.209 0.791 35 H 0.228 0.772 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.231 6.954 -8.999 13.477 hybrid contribution -0.203 0.396 0.698 0.828 sum 7.027 7.350 -8.302 13.127 Atomic orbital electron populations 1.22144 0.92746 1.04276 1.03493 1.22226 0.96927 0.75450 1.05949 1.45871 1.44751 1.12415 1.01629 1.73206 1.19216 1.04210 1.13769 1.23457 1.04019 0.95771 0.92684 1.21197 1.11768 0.90438 0.92564 1.98344 1.87369 1.43112 1.70789 1.21498 1.08053 0.93409 0.90207 1.16804 0.83469 0.78963 0.84079 1.90910 1.33813 1.55103 1.57739 1.46106 1.21166 1.50703 1.17601 1.22210 0.97297 0.99258 0.80402 0.89620 1.21671 0.95796 1.00113 0.97841 1.21989 0.99688 0.99801 0.95160 1.20432 0.87823 0.92622 0.93197 0.95714 1.21778 0.99324 1.02085 0.96046 1.43902 1.00478 1.70111 1.16005 1.19046 0.91769 1.34335 0.93215 0.91725 1.25337 0.99496 0.97436 0.96148 1.69923 1.31589 1.46028 1.06902 0.86333 0.83801 0.77728 0.79167 1.21271 1.21630 1.20261 1.21058 0.99818 0.87523 0.87110 0.91636 0.89375 0.91143 0.87561 0.87251 0.79080 0.77160 0.92196 0.92878 0.92555 0.92051 0.91931 0.94415 0.92897 0.93705 0.96366 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.11 1.39 6.91 -4.04 -0.03 1.36 16 3 N -0.26 -3.58 3.35 -57.10 -0.19 -3.77 16 4 N -0.27 -3.67 11.89 30.61 0.36 -3.30 16 5 C 0.02 0.23 12.04 -17.39 -0.21 0.02 16 6 C -0.12 -1.70 6.89 -38.88 -0.27 -1.96 16 7 Cl -0.02 -0.32 29.24 -51.86 -1.52 -1.84 16 8 C 0.00 -0.01 6.71 -82.00 -0.55 -0.56 16 9 C 0.59 10.34 6.88 -12.69 -0.09 10.25 16 10 O -0.50 -11.11 16.74 5.24 0.09 -11.02 16 11 N -0.71 -11.14 5.08 -54.88 -0.28 -11.42 16 12 C 0.11 2.08 2.64 -67.81 -0.18 1.90 16 13 H 0.09 1.82 7.52 -51.92 -0.39 1.43 16 14 C -0.12 -1.79 5.35 -26.70 -0.14 -1.93 16 15 C -0.13 -2.07 5.34 -26.83 -0.14 -2.21 16 16 C 0.17 3.25 3.48 -67.82 -0.24 3.02 16 17 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 18 C -0.13 -2.46 8.02 37.15 0.30 -2.16 16 19 N -0.58 -13.79 2.96 -165.03 -0.49 -14.28 16 20 C -0.25 -6.67 8.31 -15.06 -0.13 -6.80 16 21 H 0.07 1.68 6.51 -52.48 -0.34 1.34 16 22 C 0.02 0.42 5.18 -17.43 -0.09 0.33 16 23 N -0.90 -24.97 11.21 55.49 0.62 -24.35 16 24 Si 0.90 21.45 29.55 -169.99 -5.02 16.42 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.17 3.87 4.78 -3.71 -0.02 3.86 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.11 1.44 7.65 -51.93 -0.40 1.05 16 34 H 0.19 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.40 5.08 8.59 -40.82 -0.35 4.73 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.24 7.68 -51.93 -0.40 0.84 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.98 7.42 -51.93 -0.39 0.60 16 43 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.34 6.45 -51.93 -0.33 2.00 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -30.85 381.86 -8.88 -39.73 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.81 Total: 4.68 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.40 Total: 3.38 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.03 Total: -57.12 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -1.52 Total: -1.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.85 -8.88 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071530967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.056 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds