Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.47078 * 2 1 4 4 N 1.28433 * 125.18423 * 275.19542 * 3 2 1 5 5 C 1.30839 * 110.97576 * 180.23961 * 4 3 2 6 6 C 1.39801 * 107.88099 * 359.75086 * 5 4 3 7 7 Cl 1.73595 * 127.34001 * 180.02562 * 6 5 4 8 8 C 1.36740 * 125.18774 * 95.00747 * 3 2 1 9 9 C 1.47040 * 126.90462 * 0.04266 * 8 3 2 10 10 O 1.21644 * 119.99808 * 260.88305 * 9 8 3 11 11 N 1.34776 * 119.99875 * 80.88194 * 9 8 3 12 12 C 1.46501 * 119.99832 * 184.23198 * 11 9 8 13 13 H 1.09009 * 109.49723 * 324.93846 * 12 11 9 14 14 C 1.53035 * 109.49999 * 204.84243 * 12 11 9 15 15 C 1.53033 * 109.54019 * 178.68324 * 14 12 11 16 16 C 1.52767 * 109.38518 * 61.24024 * 15 14 12 17 17 H 1.09003 * 109.43061 * 65.42217 * 16 15 14 18 18 C 1.52992 * 109.51076 * 185.70632 * 16 15 14 19 19 N 1.46924 * 109.00301 * 305.58939 * 16 15 14 20 20 C 1.36936 * 120.62867 * 233.58197 * 19 16 15 21 21 H 1.08004 * 120.00305 * 38.47390 * 20 19 16 22 22 C 1.38812 * 120.00371 * 218.47563 * 20 19 16 23 23 N 1.31628 * 119.99724 * 2.96389 * 22 20 19 24 24 Si 1.86796 * 120.00582 * 183.23950 * 22 20 19 25 25 H 1.48500 * 109.47110 * 89.99926 * 24 22 20 26 26 H 1.48494 * 109.47448 * 210.00058 * 24 22 20 27 27 H 1.48509 * 109.46882 * 330.00338 * 24 22 20 28 28 C 1.46923 * 118.74305 * 53.30993 * 19 16 15 29 29 H 1.09000 * 109.47396 * 60.00466 * 1 2 3 30 30 H 1.09001 * 109.46923 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47069 * 299.99827 * 1 2 3 32 32 H 1.08998 * 109.47573 * 240.00012 * 2 1 3 33 33 H 1.09001 * 109.47436 * 120.00086 * 2 1 3 34 34 H 1.08001 * 126.05771 * 179.79284 * 5 4 3 35 35 H 0.96999 * 119.99871 * 4.23852 * 11 9 8 36 36 H 1.09002 * 109.46004 * 298.70662 * 14 12 11 37 37 H 1.09003 * 109.46418 * 58.67226 * 14 12 11 38 38 H 1.09006 * 109.50028 * 181.31505 * 15 14 12 39 39 H 1.08998 * 109.50185 * 301.40875 * 15 14 12 40 40 H 1.09002 * 109.47470 * 179.52466 * 18 16 15 41 41 H 1.08997 * 109.47198 * 299.52715 * 18 16 15 42 42 H 1.09004 * 109.47451 * 59.52613 * 18 16 15 43 43 H 0.96991 * 119.99732 * 179.97438 * 23 22 20 44 44 H 1.08999 * 109.58870 * 66.42693 * 28 19 16 45 45 H 1.08996 * 109.58885 * 186.85837 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1754 2.1107 -1.0454 5 6 2.6304 3.2951 -0.7260 6 6 2.7774 3.3382 0.6636 7 17 3.3450 4.6699 1.6216 8 6 2.3730 2.0917 1.1133 9 6 2.3382 1.6244 2.5070 10 8 1.4038 1.9242 3.2259 11 7 3.3416 0.8640 2.9880 12 6 3.2630 0.3214 4.3465 13 1 2.7609 1.0384 4.9962 14 6 4.6752 0.0557 4.8730 15 6 4.5955 -0.4803 6.3042 16 6 3.8213 -1.7972 6.3100 17 1 4.3825 -2.5502 5.7567 18 6 3.6166 -2.2632 7.7528 19 7 2.5154 -1.5873 5.6703 20 6 1.3586 -1.9351 6.3152 21 1 1.2631 -1.7721 7.3786 22 6 0.3085 -2.4973 5.6023 23 7 0.4458 -2.7498 4.3178 24 14 -1.3021 -2.8882 6.4640 25 1 -2.2047 -1.7117 6.3839 26 1 -1.9465 -4.0522 5.8047 27 1 -1.0354 -3.2113 7.8888 28 6 2.4739 -0.9916 4.3279 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.8524 4.0976 -1.4139 35 1 4.1158 0.6760 2.4347 36 1 5.1676 -0.6796 4.2367 37 1 5.2466 0.9839 4.8644 38 1 5.6024 -0.6472 6.6868 39 1 4.0813 0.2440 6.9359 40 1 3.0568 -3.1985 7.7567 41 1 4.5864 -2.4183 8.2256 42 1 3.0607 -1.5049 8.3043 43 1 -0.2878 -3.1430 3.8198 44 1 2.9230 -1.6775 3.6096 45 1 1.4394 -0.7922 4.0484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071530967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = 31.803195 kcal Electronic energy + Delta-G solvation = -28644.209807 eV Core-core repulsion = 24723.962365 eV Total energy + Delta-G solvation = -3920.247442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.74832 -40.90590 -39.21145 -37.69783 -36.11406 -35.60197 -34.65996 -32.80045 -31.83797 -31.34942 -30.85138 -27.79283 -26.84706 -25.30519 -24.44145 -23.78531 -22.76924 -22.05483 -21.35577 -20.74094 -19.25988 -18.34913 -17.62582 -17.39990 -17.02439 -16.63622 -16.36216 -15.83026 -15.77591 -15.37204 -15.32244 -15.04175 -14.96982 -14.50219 -14.46613 -14.12922 -13.95163 -13.53939 -13.19725 -13.03720 -12.92014 -12.81328 -12.78056 -12.71695 -12.57675 -12.41289 -12.40398 -12.13001 -11.98455 -11.69168 -11.61847 -11.51807 -11.22947 -11.14523 -10.54960 -10.43677 -10.21936 -9.89509 -8.46948 -7.85379 -5.42113 0.28971 0.63889 1.15139 1.39800 1.42383 1.45264 1.51575 1.68480 2.01467 2.49423 3.29590 3.36711 3.40883 3.73705 3.84499 3.85714 3.93593 4.08544 4.11291 4.15436 4.23663 4.28251 4.39505 4.58617 4.60731 4.68574 4.73082 4.79729 4.88798 5.02947 5.03159 5.07631 5.10750 5.17505 5.24955 5.30782 5.37481 5.50054 5.57268 5.60901 5.72315 5.76860 6.31487 6.49982 6.78908 6.97808 7.20880 7.88140 8.42493 9.19224 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.004050 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.402400 B = 6912.361454 C = 8297.686389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.112 3.888 3 N -0.258 5.258 4 N -0.275 5.275 5 C 0.030 3.970 6 C -0.123 4.123 7 Cl -0.018 7.018 8 C -0.024 4.024 9 C 0.591 3.409 10 O -0.557 6.557 11 N -0.690 5.690 12 C 0.128 3.872 13 H 0.055 0.945 14 C -0.108 4.108 15 C -0.119 4.119 16 C 0.156 3.844 17 H 0.024 0.976 18 C -0.128 4.128 19 N -0.601 5.601 20 C -0.256 4.256 21 H 0.063 0.937 22 C -0.038 4.038 23 N -0.926 5.926 24 Si 0.953 3.047 25 H -0.295 1.295 26 H -0.291 1.291 27 H -0.265 1.265 28 C 0.186 3.814 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.033 0.967 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.230 0.770 35 H 0.413 0.587 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.248 0.752 44 H 0.006 0.994 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.791 8.306 -9.320 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.007 4.007 3 N -0.047 5.047 4 N -0.106 5.106 5 C -0.148 4.148 6 C -0.161 4.161 7 Cl 0.010 6.990 8 C -0.155 4.155 9 C 0.374 3.626 10 O -0.433 6.433 11 N -0.341 5.341 12 C 0.022 3.978 13 H 0.073 0.927 14 C -0.146 4.146 15 C -0.158 4.158 16 C 0.051 3.949 17 H 0.041 0.959 18 C -0.185 4.185 19 N -0.326 5.326 20 C -0.387 4.387 21 H 0.081 0.919 22 C -0.234 4.234 23 N -0.571 5.571 24 Si 0.782 3.218 25 H -0.222 1.222 26 H -0.217 1.217 27 H -0.190 1.190 28 C 0.059 3.941 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.053 0.947 32 H 0.156 0.844 33 H 0.111 0.889 34 H 0.246 0.754 35 H 0.250 0.750 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.024 0.976 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.678 7.673 -9.698 15.703 hybrid contribution -0.909 0.200 0.904 1.297 sum 8.770 7.873 -8.794 14.705 Atomic orbital electron populations 1.22086 0.93164 1.04594 1.02196 1.22326 0.96543 0.75130 1.06682 1.45971 1.44711 1.12769 1.01242 1.73226 1.19286 1.04706 1.13355 1.24058 1.02367 0.96019 0.92316 1.21409 1.11294 0.89932 0.93468 1.98347 1.87210 1.42602 1.70842 1.21217 1.10308 0.94596 0.89382 1.17093 0.82596 0.78144 0.84791 1.90880 1.35731 1.57213 1.59465 1.45895 1.21464 1.49726 1.16966 1.21761 0.98783 0.96025 0.81203 0.92683 1.21651 0.93492 1.02055 0.97402 1.21899 1.00959 0.97276 0.95681 1.20705 0.86113 0.94668 0.93461 0.95873 1.21710 1.01003 1.00405 0.95422 1.44178 1.01541 1.70651 1.16198 1.19285 0.92939 1.33138 0.93307 0.91897 1.25975 1.02262 0.98329 0.96835 1.70059 1.31976 1.47258 1.07804 0.85494 0.80568 0.76902 0.78880 1.22210 1.21682 1.19000 1.20719 0.97587 0.89220 0.86613 0.90392 0.88337 0.94737 0.84375 0.88887 0.75395 0.75024 0.90557 0.89836 0.88633 0.93043 0.94307 0.90514 0.93807 0.94314 0.97587 0.94203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 10.24 71.98 0.74 -3.42 16 2 C 0.11 2.72 6.91 86.38 0.60 3.31 16 3 N -0.26 -6.97 3.35 -334.57 -1.12 -8.10 16 4 N -0.28 -6.82 11.89 -57.07 -0.68 -7.50 16 5 C 0.03 0.65 12.04 85.22 1.03 1.67 16 6 C -0.12 -3.25 6.89 22.72 0.16 -3.09 16 7 Cl -0.02 -0.46 29.24 -2.72 -0.08 -0.54 16 8 C -0.02 -0.74 6.71 40.76 0.27 -0.46 16 9 C 0.59 21.44 6.88 86.55 0.60 22.03 16 10 O -0.56 -25.95 16.74 -4.17 -0.07 -26.02 16 11 N -0.69 -21.82 5.08 -445.79 -2.26 -24.09 16 12 C 0.13 4.74 2.64 45.07 0.12 4.86 16 13 H 0.05 2.41 7.52 -2.38 -0.02 2.40 16 14 C -0.11 -3.05 5.35 30.62 0.16 -2.89 16 15 C -0.12 -3.55 5.34 30.53 0.16 -3.39 16 16 C 0.16 5.95 3.48 44.83 0.16 6.10 16 17 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 18 C -0.13 -4.51 8.02 71.98 0.58 -3.93 16 19 N -0.60 -29.13 2.96 -676.03 -2.00 -31.13 16 20 C -0.26 -13.86 8.31 84.03 0.70 -13.16 16 21 H 0.06 3.36 6.51 -2.91 -0.02 3.34 16 22 C -0.04 -2.09 5.18 84.86 0.44 -1.65 16 23 N -0.93 -53.63 11.21 21.65 0.24 -53.38 16 24 Si 0.95 45.47 29.55 68.60 2.03 47.50 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 C 0.19 8.69 4.78 86.36 0.41 9.10 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.09 2.56 7.65 -2.39 -0.02 2.54 16 34 H 0.23 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.41 10.12 8.59 -92.71 -0.80 9.33 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.10 2.18 8.14 -2.38 -0.02 2.17 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.52 7.68 -2.39 -0.02 1.50 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.04 1.59 7.42 -2.38 -0.02 1.58 16 43 H 0.25 13.98 8.31 -92.72 -0.77 13.21 16 44 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 45 H 0.04 2.24 6.45 -2.39 -0.02 2.23 16 Total: -1.00 -71.02 381.86 2.38 -68.64 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.21 Total: 19.52 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.11 Total: 15.09 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -5.82 Total: -124.20 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.07 Total: -26.02 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.08 Total: -0.54 kcal Total: -71.02 2.38 -68.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071530967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.441 kcal (2) G-P(sol) polarization free energy of solvation -71.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds