Wall clock time and date at job start Sat Apr 11 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47567 * 2 1 4 4 N 1.28433 * 125.18763 * 275.07608 * 3 2 1 5 5 C 1.30835 * 110.98045 * 180.02562 * 4 3 2 6 6 C 1.39810 * 107.87990 * 359.73311 * 5 4 3 7 7 Cl 1.73594 * 127.34163 * 180.26772 * 6 5 4 8 8 C 1.36747 * 125.18613 * 95.11076 * 3 2 1 9 9 C 1.47031 * 126.90565 * 359.96805 * 8 3 2 10 10 O 1.21649 * 119.99755 * 267.19732 * 9 8 3 11 11 N 1.34778 * 120.00011 * 87.20138 * 9 8 3 12 12 C 1.46503 * 119.99748 * 175.66913 * 11 9 8 13 13 H 1.09001 * 109.49663 * 34.93643 * 12 11 9 14 14 C 1.53050 * 109.49309 * 155.00014 * 12 11 9 15 15 C 1.53039 * 109.53365 * 181.31858 * 14 12 11 16 16 C 1.53191 * 109.31356 * 298.63236 * 15 14 12 17 17 H 1.09005 * 109.58809 * 294.85424 * 16 15 14 18 18 C 1.52992 * 109.58723 * 174.56881 * 16 15 14 19 19 N 1.46932 * 108.77349 * 54.63651 * 16 15 14 20 20 C 1.36932 * 120.62755 * 126.37344 * 19 16 15 21 21 H 1.08004 * 120.00236 * 321.04151 * 20 19 16 22 22 C 1.38813 * 120.00617 * 141.04428 * 20 19 16 23 23 N 1.31619 * 119.99106 * 356.58658 * 22 20 19 24 24 Si 1.86790 * 120.00608 * 176.58628 * 22 20 19 25 25 H 1.48500 * 109.47566 * 89.99754 * 24 22 20 26 26 H 1.48499 * 109.47554 * 210.00102 * 24 22 20 27 27 H 1.48501 * 109.47280 * 330.00176 * 24 22 20 28 28 C 1.46925 * 118.74019 * 306.39024 * 19 16 15 29 29 H 1.08994 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46834 * 300.00236 * 1 2 3 31 31 H 1.09001 * 109.46634 * 59.99409 * 1 2 3 32 32 H 1.08999 * 109.47336 * 239.99832 * 2 1 3 33 33 H 1.09005 * 109.47059 * 119.99979 * 2 1 3 34 34 H 1.08008 * 126.06114 * 180.02562 * 5 4 3 35 35 H 0.97001 * 119.99915 * 355.67262 * 11 9 8 36 36 H 1.08995 * 109.45783 * 61.29393 * 14 12 11 37 37 H 1.09002 * 109.45789 * 301.33869 * 14 12 11 38 38 H 1.09000 * 109.49411 * 178.68416 * 15 14 12 39 39 H 1.09000 * 109.50029 * 58.58479 * 15 14 12 40 40 H 1.09000 * 109.47391 * 60.28185 * 18 16 15 41 41 H 1.09000 * 109.47467 * 180.28382 * 18 16 15 42 42 H 1.09000 * 109.47445 * 300.28472 * 18 16 15 43 43 H 0.97007 * 119.99923 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.58814 * 293.82065 * 28 19 16 45 45 H 1.09002 * 109.70097 * 173.46281 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1776 2.1099 -1.0455 5 6 2.6278 3.2960 -0.7257 6 6 2.7686 3.3412 0.6645 7 17 3.3227 4.6777 1.6239 8 6 2.3750 2.0909 1.1132 9 6 2.3412 1.6233 2.5067 10 8 1.3569 1.8255 3.1924 11 7 3.4007 0.9707 3.0245 12 6 3.4059 0.5886 4.4388 13 1 2.3948 0.3231 4.7476 14 6 4.3334 -0.6121 4.6400 15 6 4.3142 -1.0327 6.1114 16 6 4.8261 0.1239 6.9757 17 1 5.8743 0.3155 6.7461 18 6 4.6830 -0.2389 8.4550 19 7 4.0302 1.3232 6.6804 20 6 3.4141 2.0169 7.6875 21 1 2.9555 1.4848 8.5078 22 6 3.3790 3.4042 7.6541 23 7 3.9954 4.0550 6.6904 24 14 2.4570 4.3473 8.9768 25 1 3.3763 4.6454 10.1043 26 1 1.9409 5.6190 8.4096 27 1 1.3206 3.5274 9.4684 28 6 3.9076 1.7636 5.2841 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.8469 4.0996 -1.4134 35 1 4.1597 0.7542 2.4608 36 1 5.3489 -0.3385 4.3537 37 1 3.9928 -1.4418 4.0206 38 1 4.9567 -1.9022 6.2496 39 1 3.2947 -1.2827 6.4050 40 1 5.2696 -1.1324 8.6684 41 1 5.0430 0.5871 9.0683 42 1 3.6342 -0.4301 8.6825 43 1 3.9713 5.0245 6.6672 44 1 4.8808 2.0888 4.9167 45 1 3.1983 2.5888 5.2200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071530969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:36 Heat of formation + Delta-G solvation = 53.122530 kcal Electronic energy + Delta-G solvation = -28490.139839 eV Core-core repulsion = 24570.816873 eV Total energy + Delta-G solvation = -3919.322966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.67770 -39.40806 -37.57502 -36.44876 -34.72644 -34.49526 -32.81160 -31.40825 -30.19226 -29.95030 -29.79565 -26.13673 -25.05992 -24.35203 -23.03964 -22.23738 -21.66441 -20.51845 -19.94087 -19.28497 -18.06104 -16.55517 -16.20749 -16.18417 -15.52235 -15.31317 -15.07363 -14.46220 -14.23097 -14.03824 -13.80679 -13.57663 -13.47484 -13.33922 -13.06876 -12.73423 -12.44544 -12.40304 -11.92099 -11.80065 -11.69510 -11.54559 -11.44332 -11.11014 -10.88001 -10.76811 -10.60050 -10.44706 -10.43258 -10.27458 -10.05007 -9.95272 -9.61305 -9.47717 -9.36111 -8.74143 -8.69152 -8.40140 -6.46114 -5.74438 -3.30576 1.44455 1.78673 2.39296 2.48469 2.82722 3.34910 3.41577 3.48263 3.49414 4.23932 4.50847 4.58174 4.65265 4.79225 4.84145 5.12443 5.27116 5.28262 5.34510 5.35097 5.47839 5.50446 5.53956 5.62615 5.80529 5.94259 6.06227 6.08270 6.26155 6.27018 6.38319 6.42908 6.47049 6.49554 6.61571 6.67631 6.81440 7.06857 7.15222 7.28401 7.69426 7.73737 7.80546 7.87908 8.33440 8.57585 9.26937 9.86310 10.47480 11.33122 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.004078 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.128976 B = 6864.290432 C = 8206.979815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.118 3.882 3 N -0.266 5.266 4 N -0.276 5.276 5 C 0.020 3.980 6 C -0.117 4.117 7 Cl -0.008 7.008 8 C -0.004 4.004 9 C 0.587 3.413 10 O -0.506 6.506 11 N -0.703 5.703 12 C 0.114 3.886 13 H 0.085 0.915 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.134 4.134 19 N -0.581 5.581 20 C -0.259 4.259 21 H 0.064 0.936 22 C 0.017 3.983 23 N -0.896 5.896 24 Si 0.899 3.101 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.278 1.278 28 C 0.172 3.828 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.193 0.807 35 H 0.395 0.605 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.020 0.980 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -9.225 -14.663 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.002 4.002 3 N -0.056 5.056 4 N -0.106 5.106 5 C -0.158 4.158 6 C -0.155 4.155 7 Cl 0.021 6.979 8 C -0.135 4.135 9 C 0.367 3.633 10 O -0.378 6.378 11 N -0.353 5.353 12 C 0.009 3.991 13 H 0.103 0.897 14 C -0.154 4.154 15 C -0.166 4.166 16 C 0.059 3.941 17 H 0.042 0.958 18 C -0.192 4.192 19 N -0.305 5.305 20 C -0.388 4.388 21 H 0.082 0.918 22 C -0.184 4.184 23 N -0.538 5.538 24 Si 0.729 3.271 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.203 1.203 28 C 0.045 3.955 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.210 0.790 35 H 0.228 0.772 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.516 -9.590 -14.959 17.833 hybrid contribution 0.255 1.247 0.975 1.603 sum -1.261 -8.343 -13.984 16.332 Atomic orbital electron populations 1.22185 0.93035 1.03749 1.04042 1.22069 0.96596 0.76233 1.05313 1.45704 1.45729 1.12273 1.01852 1.73162 1.19484 1.04359 1.13603 1.23491 1.03926 0.95577 0.92824 1.21363 1.10603 0.90846 0.92716 1.98410 1.87526 1.41969 1.70001 1.21488 1.08396 0.93582 0.90001 1.16784 0.83972 0.78753 0.83745 1.90906 1.32567 1.54243 1.60132 1.46101 1.19240 1.57348 1.12655 1.22199 1.00906 0.97711 0.78278 0.89686 1.21675 0.99370 0.96558 0.97750 1.22055 1.01425 0.98803 0.94300 1.20512 0.93567 0.87164 0.92903 0.95753 1.21766 1.00947 0.99581 0.96874 1.43906 1.56282 1.28397 1.01914 1.18989 1.29557 0.87756 1.02543 0.91838 1.25370 0.98242 0.97286 0.97464 1.69929 1.44261 1.07055 1.32544 0.86356 0.79558 0.79603 0.81611 1.21284 1.21601 1.20315 1.21044 0.98966 0.92902 0.82569 0.89858 0.91070 0.91230 0.87598 0.88183 0.78992 0.77180 0.92130 0.93143 0.92645 0.92090 0.94477 0.91947 0.92910 0.93585 0.96184 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.12 1.07 6.91 -4.04 -0.03 1.04 16 3 N -0.27 -3.38 3.35 -57.11 -0.19 -3.57 16 4 N -0.28 -3.54 11.89 30.61 0.36 -3.18 16 5 C 0.02 0.25 12.04 -17.39 -0.21 0.04 16 6 C -0.12 -1.77 6.89 -38.88 -0.27 -2.04 16 7 Cl -0.01 -0.13 29.24 -51.86 -1.52 -1.64 16 8 C 0.00 -0.07 6.71 -82.00 -0.55 -0.62 16 9 C 0.59 10.34 6.88 -12.70 -0.09 10.26 16 10 O -0.51 -11.11 16.74 5.23 0.09 -11.02 16 11 N -0.70 -11.18 5.07 -54.88 -0.28 -11.46 16 12 C 0.11 2.11 2.64 -67.81 -0.18 1.93 16 13 H 0.09 1.78 7.52 -51.93 -0.39 1.39 16 14 C -0.12 -1.76 5.35 -26.68 -0.14 -1.90 16 15 C -0.13 -2.05 5.37 -26.61 -0.14 -2.20 16 16 C 0.17 3.31 3.49 -67.60 -0.24 3.07 16 17 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.13 -2.48 8.05 37.15 0.30 -2.18 16 19 N -0.58 -14.21 2.95 -164.78 -0.49 -14.69 16 20 C -0.26 -6.99 8.31 -15.06 -0.13 -7.11 16 21 H 0.06 1.69 6.52 -52.48 -0.34 1.35 16 22 C 0.02 0.47 5.17 -17.43 -0.09 0.38 16 23 N -0.90 -26.22 11.25 55.49 0.62 -25.59 16 24 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.17 4.07 4.78 -3.71 -0.02 4.05 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.85 7.65 -51.93 -0.40 0.45 16 34 H 0.19 1.76 8.06 -52.48 -0.42 1.34 16 35 H 0.39 5.12 8.59 -40.82 -0.35 4.77 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 1.26 7.70 -51.93 -0.40 0.86 16 42 H 0.05 0.99 7.40 -51.93 -0.38 0.61 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 2.50 6.49 -51.93 -0.34 2.17 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -32.78 382.00 -8.87 -41.65 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.81 Total: 3.05 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.40 Total: 3.60 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: 0.03 Total: -58.50 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.78 -8.87 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071530969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.776 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds