Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47567 * 2 1 4 4 N 1.28433 * 125.18763 * 275.07608 * 3 2 1 5 5 C 1.30835 * 110.98045 * 180.02562 * 4 3 2 6 6 C 1.39810 * 107.87990 * 359.73311 * 5 4 3 7 7 Cl 1.73594 * 127.34163 * 180.26772 * 6 5 4 8 8 C 1.36747 * 125.18613 * 95.11076 * 3 2 1 9 9 C 1.47031 * 126.90565 * 359.96805 * 8 3 2 10 10 O 1.21649 * 119.99755 * 267.19732 * 9 8 3 11 11 N 1.34778 * 120.00011 * 87.20138 * 9 8 3 12 12 C 1.46503 * 119.99748 * 175.66913 * 11 9 8 13 13 H 1.09001 * 109.49663 * 34.93643 * 12 11 9 14 14 C 1.53050 * 109.49309 * 155.00014 * 12 11 9 15 15 C 1.53039 * 109.53365 * 181.31858 * 14 12 11 16 16 C 1.53191 * 109.31356 * 298.63236 * 15 14 12 17 17 H 1.09005 * 109.58809 * 294.85424 * 16 15 14 18 18 C 1.52992 * 109.58723 * 174.56881 * 16 15 14 19 19 N 1.46932 * 108.77349 * 54.63651 * 16 15 14 20 20 C 1.36932 * 120.62755 * 126.37344 * 19 16 15 21 21 H 1.08004 * 120.00236 * 321.04151 * 20 19 16 22 22 C 1.38813 * 120.00617 * 141.04428 * 20 19 16 23 23 N 1.31619 * 119.99106 * 356.58658 * 22 20 19 24 24 Si 1.86790 * 120.00608 * 176.58628 * 22 20 19 25 25 H 1.48500 * 109.47566 * 89.99754 * 24 22 20 26 26 H 1.48499 * 109.47554 * 210.00102 * 24 22 20 27 27 H 1.48501 * 109.47280 * 330.00176 * 24 22 20 28 28 C 1.46925 * 118.74019 * 306.39024 * 19 16 15 29 29 H 1.08994 * 109.47102 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46834 * 300.00236 * 1 2 3 31 31 H 1.09001 * 109.46634 * 59.99409 * 1 2 3 32 32 H 1.08999 * 109.47336 * 239.99832 * 2 1 3 33 33 H 1.09005 * 109.47059 * 119.99979 * 2 1 3 34 34 H 1.08008 * 126.06114 * 180.02562 * 5 4 3 35 35 H 0.97001 * 119.99915 * 355.67262 * 11 9 8 36 36 H 1.08995 * 109.45783 * 61.29393 * 14 12 11 37 37 H 1.09002 * 109.45789 * 301.33869 * 14 12 11 38 38 H 1.09000 * 109.49411 * 178.68416 * 15 14 12 39 39 H 1.09000 * 109.50029 * 58.58479 * 15 14 12 40 40 H 1.09000 * 109.47391 * 60.28185 * 18 16 15 41 41 H 1.09000 * 109.47467 * 180.28382 * 18 16 15 42 42 H 1.09000 * 109.47445 * 300.28472 * 18 16 15 43 43 H 0.97007 * 119.99923 * 180.02562 * 23 22 20 44 44 H 1.08997 * 109.58814 * 293.82065 * 28 19 16 45 45 H 1.09002 * 109.70097 * 173.46281 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1776 2.1099 -1.0455 5 6 2.6278 3.2960 -0.7257 6 6 2.7686 3.3412 0.6645 7 17 3.3227 4.6777 1.6239 8 6 2.3750 2.0909 1.1132 9 6 2.3412 1.6233 2.5067 10 8 1.3569 1.8255 3.1924 11 7 3.4007 0.9707 3.0245 12 6 3.4059 0.5886 4.4388 13 1 2.3948 0.3231 4.7476 14 6 4.3334 -0.6121 4.6400 15 6 4.3142 -1.0327 6.1114 16 6 4.8261 0.1239 6.9757 17 1 5.8743 0.3155 6.7461 18 6 4.6830 -0.2389 8.4550 19 7 4.0302 1.3232 6.6804 20 6 3.4141 2.0169 7.6875 21 1 2.9555 1.4848 8.5078 22 6 3.3790 3.4042 7.6541 23 7 3.9954 4.0550 6.6904 24 14 2.4570 4.3473 8.9768 25 1 3.3763 4.6454 10.1043 26 1 1.9409 5.6190 8.4096 27 1 1.3206 3.5274 9.4684 28 6 3.9076 1.7636 5.2841 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.8469 4.0996 -1.4134 35 1 4.1597 0.7542 2.4608 36 1 5.3489 -0.3385 4.3537 37 1 3.9928 -1.4418 4.0206 38 1 4.9567 -1.9022 6.2496 39 1 3.2947 -1.2827 6.4050 40 1 5.2696 -1.1324 8.6684 41 1 5.0430 0.5871 9.0683 42 1 3.6342 -0.4301 8.6825 43 1 3.9713 5.0245 6.6672 44 1 4.8808 2.0888 4.9167 45 1 3.1983 2.5888 5.2200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071530969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = 31.306180 kcal Electronic energy + Delta-G solvation = -28491.085867 eV Core-core repulsion = 24570.816873 eV Total energy + Delta-G solvation = -3920.268994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.73950 -40.89560 -39.18583 -37.67537 -36.10176 -35.58086 -34.64341 -32.79310 -31.83042 -31.33888 -30.83705 -27.79176 -26.83750 -25.27736 -24.39411 -23.81102 -22.75111 -22.03313 -21.34591 -20.73261 -19.26633 -18.32837 -17.62110 -17.38051 -17.03100 -16.62473 -16.43716 -15.86927 -15.60962 -15.33748 -15.28135 -15.02785 -14.94514 -14.68181 -14.33538 -14.14035 -13.91879 -13.50967 -13.14932 -13.02724 -12.90281 -12.80699 -12.77856 -12.72227 -12.55155 -12.39003 -12.36095 -12.14797 -11.99487 -11.69523 -11.60681 -11.50962 -11.21939 -11.12705 -10.55455 -10.40512 -10.21961 -9.89281 -8.46454 -7.84176 -5.42791 0.29224 0.69504 1.16847 1.36038 1.41435 1.43890 1.51407 1.60400 2.11504 2.49386 3.30494 3.36066 3.41868 3.73804 3.87855 3.89330 3.95014 4.08715 4.11685 4.19271 4.25569 4.28662 4.39706 4.60832 4.63716 4.72534 4.73403 4.80563 4.90492 5.03484 5.07998 5.08572 5.10807 5.17753 5.26426 5.32070 5.38160 5.52680 5.58691 5.61892 5.72151 5.79485 6.31845 6.49433 6.76502 6.97949 7.20642 7.89050 8.43337 9.19465 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011891 B = 0.004078 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.128976 B = 6864.290432 C = 8206.979815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.106 3.894 3 N -0.255 5.255 4 N -0.270 5.270 5 C 0.027 3.973 6 C -0.133 4.133 7 Cl -0.028 7.028 8 C -0.022 4.022 9 C 0.592 3.408 10 O -0.557 6.557 11 N -0.688 5.688 12 C 0.130 3.870 13 H 0.061 0.939 14 C -0.107 4.107 15 C -0.117 4.117 16 C 0.153 3.847 17 H 0.019 0.981 18 C -0.127 4.127 19 N -0.602 5.602 20 C -0.255 4.255 21 H 0.066 0.934 22 C -0.042 4.042 23 N -0.928 5.928 24 Si 0.954 3.046 25 H -0.278 1.278 26 H -0.300 1.300 27 H -0.270 1.270 28 C 0.185 3.815 29 H 0.113 0.887 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.139 0.861 33 H 0.107 0.893 34 H 0.225 0.775 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.245 0.755 44 H -0.002 1.002 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.051 -12.323 -16.156 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.045 5.045 4 N -0.100 5.100 5 C -0.150 4.150 6 C -0.171 4.171 7 Cl 0.000 7.000 8 C -0.153 4.153 9 C 0.375 3.625 10 O -0.434 6.434 11 N -0.339 5.339 12 C 0.024 3.976 13 H 0.079 0.921 14 C -0.145 4.145 15 C -0.157 4.157 16 C 0.048 3.952 17 H 0.037 0.963 18 C -0.185 4.185 19 N -0.326 5.326 20 C -0.386 4.386 21 H 0.084 0.916 22 C -0.238 4.238 23 N -0.573 5.573 24 Si 0.783 3.217 25 H -0.204 1.204 26 H -0.227 1.227 27 H -0.194 1.194 28 C 0.058 3.942 29 H 0.131 0.869 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.125 0.875 34 H 0.241 0.759 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.016 0.984 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.961 -12.749 -16.472 20.852 hybrid contribution 0.093 2.135 1.402 2.556 sum -0.868 -10.614 -15.070 18.453 Atomic orbital electron populations 1.22162 0.92839 1.05186 1.02289 1.22513 0.96751 0.74619 1.07320 1.46080 1.44507 1.13136 1.00739 1.73196 1.19139 1.04439 1.13275 1.23965 1.02843 0.96214 0.91976 1.21576 1.11510 0.90251 0.93731 1.98402 1.87816 1.43032 1.70747 1.21152 1.10211 0.94400 0.89553 1.17050 0.83341 0.77653 0.84454 1.90879 1.34568 1.56152 1.61753 1.45891 1.19540 1.56584 1.11841 1.21732 1.00253 0.96984 0.78614 0.92073 1.21658 0.98985 0.95811 0.98009 1.21954 1.01718 0.98210 0.93792 1.20818 0.92733 0.86695 0.94917 0.96304 1.21700 1.01099 1.00331 0.95348 1.44192 1.57179 1.29597 1.01643 1.19282 1.28576 0.88040 1.02707 0.91617 1.26064 0.99865 0.98426 0.99452 1.70105 1.46416 1.06427 1.34316 0.85470 0.78757 0.77942 0.79549 1.20447 1.22701 1.19427 1.20679 0.96315 0.93514 0.83673 0.86866 0.94326 0.91337 0.84264 0.87489 0.75870 0.75037 0.90968 0.89041 0.88536 0.92680 0.90406 0.94523 0.93593 0.94573 0.98417 0.94683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.63 10.24 71.98 0.74 -1.90 16 2 C 0.11 1.65 6.91 86.38 0.60 2.25 16 3 N -0.26 -6.05 3.35 -334.59 -1.12 -7.17 16 4 N -0.27 -6.33 11.89 -57.06 -0.68 -7.01 16 5 C 0.03 0.64 12.04 85.22 1.03 1.66 16 6 C -0.13 -3.98 6.89 22.72 0.16 -3.82 16 7 Cl -0.03 -0.96 29.24 -2.72 -0.08 -1.04 16 8 C -0.02 -0.68 6.71 40.76 0.27 -0.40 16 9 C 0.59 21.32 6.88 86.55 0.60 21.91 16 10 O -0.56 -25.69 16.74 -4.19 -0.07 -25.76 16 11 N -0.69 -21.67 5.07 -445.78 -2.26 -23.93 16 12 C 0.13 4.80 2.64 45.07 0.12 4.92 16 13 H 0.06 2.60 7.52 -2.39 -0.02 2.58 16 14 C -0.11 -2.91 5.35 30.62 0.16 -2.75 16 15 C -0.12 -3.44 5.37 30.67 0.16 -3.27 16 16 C 0.15 5.97 3.49 44.97 0.16 6.13 16 17 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 18 C -0.13 -4.52 8.05 71.98 0.58 -3.94 16 19 N -0.60 -30.03 2.95 -675.23 -1.99 -32.02 16 20 C -0.26 -14.19 8.31 84.03 0.70 -13.50 16 21 H 0.07 3.56 6.52 -2.91 -0.02 3.54 16 22 C -0.04 -2.42 5.17 84.86 0.44 -1.99 16 23 N -0.93 -57.26 11.25 21.65 0.24 -57.02 16 24 Si 0.95 47.07 29.55 68.60 2.03 49.10 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 27 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 28 C 0.19 9.12 4.78 86.36 0.41 9.53 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.54 7.65 -2.38 -0.02 1.52 16 34 H 0.22 3.55 8.06 -2.91 -0.02 3.52 16 35 H 0.41 10.07 8.59 -92.71 -0.80 9.27 16 36 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.04 1.46 7.70 -2.39 -0.02 1.44 16 42 H 0.04 1.67 7.40 -2.39 -0.02 1.65 16 43 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 44 H 0.00 -0.12 8.14 -2.39 -0.02 -0.13 16 45 H 0.03 2.09 6.49 -2.39 -0.02 2.08 16 Total: -1.00 -77.26 382.00 2.39 -74.87 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.21 Total: 15.14 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.12 Total: 14.84 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -5.81 Total: -127.15 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.07 Total: -25.76 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -77.26 2.39 -74.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071530969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.176 kcal (2) G-P(sol) polarization free energy of solvation -77.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds