Wall clock time and date at job start Sat Apr 11 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34254 * 125.75302 * 2 1 4 4 C 1.38050 * 107.41658 * 179.75670 * 3 2 1 5 5 C 1.47429 * 126.41371 * 180.20745 * 4 3 2 6 6 O 1.21601 * 119.99855 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00272 * 0.02562 * 5 4 3 8 8 C 1.47391 * 135.85067 * 359.63681 * 7 5 4 9 9 C 1.52067 * 87.41040 * 154.38461 * 8 7 5 10 10 C 1.47385 * 135.85456 * 179.97438 * 7 5 4 11 11 C 1.53517 * 117.21301 * 267.27562 * 9 8 7 12 12 C 1.54627 * 102.70283 * 262.92825 * 11 9 8 13 13 N 1.47149 * 107.37943 * 339.38541 * 12 11 9 14 14 C 1.36934 * 125.57880 * 179.04375 * 13 12 11 15 15 H 1.07996 * 120.00001 * 174.83023 * 14 13 12 16 16 C 1.38811 * 120.00130 * 354.82172 * 14 13 12 17 17 N 1.31622 * 120.00144 * 7.06898 * 16 14 13 18 18 Si 1.86809 * 119.99885 * 187.06629 * 16 14 13 19 19 H 1.48502 * 109.47071 * 94.99138 * 18 16 14 20 20 H 1.48503 * 109.46984 * 214.98688 * 18 16 14 21 21 H 1.48495 * 109.47186 * 334.99048 * 18 16 14 22 22 C 1.47753 * 108.84077 * 359.08567 * 13 12 11 23 23 C 1.41282 * 107.16786 * 0.22654 * 4 3 2 24 24 C 1.50703 * 125.98717 * 179.97438 * 23 4 3 25 25 F 1.39895 * 109.47203 * 209.99652 * 24 23 4 26 26 F 1.39894 * 109.46868 * 329.99905 * 24 23 4 27 27 N 1.30451 * 108.02747 * 359.97438 * 23 4 3 28 28 H 1.08997 * 109.47234 * 89.99616 * 1 2 3 29 29 H 1.08998 * 109.46832 * 210.00287 * 1 2 3 30 30 H 1.09003 * 109.46659 * 329.99487 * 1 2 3 31 31 H 1.08004 * 126.29229 * 0.02562 * 3 2 1 32 32 H 1.09008 * 113.54198 * 268.98993 * 8 7 5 33 33 H 1.08999 * 113.54646 * 39.67329 * 8 7 5 34 34 H 1.09002 * 113.54733 * 320.32881 * 10 7 5 35 35 H 1.09004 * 113.54449 * 90.93346 * 10 7 5 36 36 H 1.09001 * 110.76202 * 21.23195 * 11 9 8 37 37 H 1.09000 * 110.76373 * 144.62720 * 11 9 8 38 38 H 1.09005 * 109.86384 * 98.83586 * 12 11 9 39 39 H 1.09001 * 109.86778 * 219.93537 * 12 11 9 40 40 H 0.96997 * 119.99748 * 179.97438 * 17 16 14 41 41 H 1.08995 * 110.40197 * 263.50866 * 22 13 12 42 42 H 1.08998 * 110.40879 * 141.08003 * 22 13 12 43 43 H 1.09007 * 109.46790 * 90.00129 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 0.0056 5 6 4.7638 1.5061 0.0119 6 8 5.8681 0.9970 0.0160 7 7 4.6406 2.8482 0.0132 8 6 3.5216 3.8075 0.0031 9 6 4.4582 4.8015 0.6717 10 6 5.5660 3.9953 0.0191 11 6 4.4463 4.8546 2.2059 12 6 3.4990 6.0414 2.4977 13 7 3.4441 6.8691 1.2823 14 6 2.6982 8.0068 1.1261 15 1 2.7888 8.5921 0.2231 16 6 1.8255 8.4075 2.1284 17 7 1.8151 7.7762 3.2833 18 14 0.6657 9.8429 1.8382 19 1 -0.6522 9.3306 1.3844 20 1 0.4927 10.6029 3.1022 21 1 1.2345 10.7363 0.7973 22 6 4.3248 6.2712 0.2577 23 6 3.5311 -0.7573 0.0037 24 6 4.7322 -1.6675 0.0076 25 9 4.4168 -2.8587 -0.6547 26 9 5.7965 -1.0379 -0.6466 27 7 2.2827 -1.1356 -0.0021 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9166 2.1170 0.0004 32 1 3.2131 4.1061 -0.9989 33 1 2.6837 3.5057 0.6316 34 1 6.4350 3.8503 0.6610 35 1 5.8316 4.3457 -0.9783 36 1 4.0464 3.9297 2.6215 37 1 5.4455 5.0535 2.5934 38 1 2.5029 5.6698 2.7381 39 1 3.8874 6.6297 3.3291 40 1 1.2055 8.0566 3.9838 41 1 5.3001 6.7578 0.2641 42 1 3.8672 6.3480 -0.7286 43 1 5.0174 -1.8883 1.0363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072820076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:41 Heat of formation + Delta-G solvation = 5.094455 kcal Electronic energy + Delta-G solvation = -30134.490967 eV Core-core repulsion = 25661.288667 eV Total energy + Delta-G solvation = -4473.202300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -49.93229 -47.93681 -42.69436 -41.65793 -39.23992 -37.23553 -34.81707 -34.07726 -32.31076 -30.97426 -30.00475 -29.49512 -27.55203 -27.17225 -26.42343 -25.32978 -23.25671 -22.08467 -21.72320 -20.61326 -19.81667 -18.66474 -18.53361 -18.40671 -17.97554 -17.63840 -16.98523 -16.91669 -16.71090 -16.45885 -16.29595 -15.91497 -15.57524 -15.08718 -14.71142 -14.57784 -14.38435 -14.13340 -14.04873 -13.82755 -13.74520 -13.63279 -13.52483 -13.43394 -13.22815 -12.82898 -12.74351 -12.50981 -12.17523 -12.14190 -11.97875 -11.85284 -11.76086 -11.64038 -11.14511 -10.80721 -10.79740 -10.60824 -10.01840 -9.57744 -8.80325 -7.78919 -5.11864 0.34843 0.62346 1.11590 1.52046 1.52858 1.61434 1.83353 2.31690 2.55436 2.57131 3.02538 3.27095 3.30963 3.43657 3.55400 3.64191 3.77742 3.88413 3.90920 3.98369 4.13380 4.19761 4.27419 4.37776 4.49364 4.51226 4.57645 4.67056 4.70123 4.74289 4.78707 4.89986 4.93306 5.03817 5.11334 5.22898 5.25906 5.56069 5.65535 5.73332 5.85029 6.16169 6.26543 6.75048 7.17704 7.20946 7.85463 8.50009 9.31774 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.002909 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.606223 B = 9622.043950 C =10739.959744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.345 5.345 3 C 0.120 3.880 4 C -0.282 4.282 5 C 0.610 3.390 6 O -0.564 6.564 7 N -0.640 5.640 8 C 0.119 3.881 9 C -0.097 4.097 10 C 0.129 3.871 11 C -0.102 4.102 12 C 0.189 3.811 13 N -0.624 5.624 14 C -0.233 4.233 15 H 0.085 0.915 16 C -0.063 4.063 17 N -0.950 5.950 18 Si 0.970 3.030 19 H -0.286 1.286 20 H -0.302 1.302 21 H -0.269 1.269 22 C 0.152 3.848 23 C 0.034 3.966 24 C 0.352 3.648 25 F -0.202 7.202 26 F -0.179 7.179 27 N -0.281 5.281 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.219 0.781 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.018 0.982 39 H -0.001 1.001 40 H 0.244 0.756 41 H 0.031 0.969 42 H 0.060 0.940 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.445 -15.655 -7.389 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.124 5.124 3 C -0.032 4.032 4 C -0.297 4.297 5 C 0.402 3.598 6 O -0.444 6.444 7 N -0.374 5.374 8 C -0.003 4.003 9 C -0.099 4.099 10 C 0.007 3.993 11 C -0.140 4.140 12 C 0.064 3.936 13 N -0.351 5.351 14 C -0.362 4.362 15 H 0.103 0.897 16 C -0.256 4.256 17 N -0.599 5.599 18 Si 0.800 3.200 19 H -0.213 1.213 20 H -0.230 1.230 21 H -0.194 1.194 22 C 0.026 3.974 23 C -0.134 4.134 24 C 0.297 3.703 25 F -0.184 7.184 26 F -0.160 7.160 27 N -0.104 5.104 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.141 0.859 31 H 0.235 0.765 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.037 0.963 39 H 0.017 0.983 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.954 -17.068 -7.330 18.677 hybrid contribution -0.153 1.617 0.243 1.642 sum -2.107 -15.451 -7.087 17.129 Atomic orbital electron populations 1.22589 0.69907 1.07216 1.06038 1.48837 1.08867 1.02616 1.52055 1.23897 0.89248 0.95213 0.94856 1.20024 0.93751 0.92244 1.23711 1.16858 0.87612 0.79679 0.75696 1.90834 1.28024 1.72691 1.52838 1.49541 1.12418 1.02697 1.72772 1.23108 0.91083 0.84343 1.01780 1.21960 0.97314 0.94604 0.96001 1.22767 0.94030 0.80895 1.01654 1.22252 0.99968 0.98297 0.93492 1.20930 0.95432 0.89067 0.88136 1.44826 1.51598 1.27217 1.11438 1.19435 1.14530 1.00131 1.02124 0.89705 1.25550 1.01687 1.02256 0.96153 1.70187 1.40618 1.44445 1.04661 0.85172 0.79368 0.79012 0.76469 1.21318 1.22972 1.19402 1.21305 0.93684 0.89679 0.92707 1.23026 0.94312 0.93879 1.02169 1.19716 0.80097 0.75532 0.94956 1.92994 1.93357 1.47860 1.84145 1.93150 1.56614 1.82214 1.83993 1.77091 1.00398 1.09150 1.23735 0.88038 0.87756 0.85894 0.76524 0.86999 0.89583 0.90498 0.87537 0.91044 0.91171 0.96343 0.98287 0.94634 0.95127 0.92165 0.82516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.66 11.44 127.77 1.46 2.12 16 2 N -0.35 -6.33 3.98 -367.76 -1.46 -7.80 16 3 C 0.12 2.32 10.65 84.28 0.90 3.21 16 4 C -0.28 -7.34 6.09 -20.15 -0.12 -7.46 16 5 C 0.61 18.20 8.02 86.66 0.70 18.90 16 6 O -0.56 -20.31 14.03 -4.03 -0.06 -20.36 16 7 N -0.64 -16.45 3.70 -863.91 -3.19 -19.64 16 8 C 0.12 2.68 6.41 83.76 0.54 3.22 16 9 C -0.10 -2.68 1.06 -52.62 -0.06 -2.74 16 10 C 0.13 3.13 8.02 83.66 0.67 3.80 16 11 C -0.10 -3.35 6.40 31.32 0.20 -3.15 16 12 C 0.19 8.51 5.40 86.81 0.47 8.97 16 13 N -0.62 -28.52 3.41 -693.44 -2.36 -30.88 16 14 C -0.23 -11.93 10.26 84.03 0.86 -11.06 16 15 H 0.09 4.12 7.84 -2.91 -0.02 4.10 16 16 C -0.06 -3.38 5.48 84.86 0.46 -2.91 16 17 N -0.95 -54.00 10.35 21.65 0.22 -53.77 16 18 Si 0.97 42.99 29.56 68.60 2.03 45.02 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 C 0.15 5.09 6.70 86.23 0.58 5.67 16 23 C 0.03 0.91 6.89 43.51 0.30 1.21 16 24 C 0.35 8.80 5.66 71.24 0.40 9.21 16 25 F -0.20 -5.24 17.27 44.97 0.78 -4.46 16 26 F -0.18 -5.57 13.58 44.97 0.61 -4.96 16 27 N -0.28 -6.90 12.43 -46.68 -0.58 -7.48 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.22 3.00 5.18 -2.91 -0.02 2.99 16 32 H 0.11 2.08 8.06 -2.38 -0.02 2.06 16 33 H 0.09 1.82 6.23 -2.39 -0.01 1.81 16 34 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 35 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.02 0.92 7.30 -2.38 -0.02 0.90 16 39 H 0.00 -0.06 7.60 -2.39 -0.02 -0.08 16 40 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 41 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.06 1.84 8.00 -2.39 -0.02 1.82 16 43 H 0.16 2.88 8.14 -2.38 -0.02 2.86 16 Total: -1.00 -74.62 359.83 4.39 -70.22 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.05 Total: 5.12 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 7.36 Total: 28.99 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -7.38 Total: -119.57 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 9 Polarization: -10.81 SS G_CDS: 1.39 Total: -9.43 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -74.62 4.39 -70.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072820076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.318 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds