Wall clock time and date at job start Sat Apr 11 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28447 * 125.18667 * 2 1 4 4 C 1.30867 * 110.92536 * 180.28153 * 3 2 1 5 5 C 1.50699 * 126.07363 * 179.75212 * 4 3 2 6 6 F 1.39899 * 109.47068 * 119.95277 * 5 4 3 7 7 F 1.39898 * 109.47154 * 239.95595 * 5 4 3 8 8 C 1.39679 * 107.86215 * 359.71273 * 4 3 2 9 9 C 1.36600 * 125.19409 * 179.79118 * 2 1 3 10 10 C 1.47158 * 126.87929 * 359.97438 * 9 2 1 11 11 O 1.21632 * 120.00566 * 352.87599 * 10 9 2 12 12 N 1.34786 * 119.99956 * 172.87342 * 10 9 2 13 13 C 1.47401 * 125.58471 * 354.44128 * 12 10 9 14 14 C 1.54865 * 104.81718 * 204.43893 * 13 12 10 15 15 C 1.55172 * 101.72830 * 322.76885 * 14 13 12 16 16 H 1.08998 * 113.25664 * 158.96077 * 15 14 13 17 17 C 1.53757 * 108.30935 * 285.38912 * 15 14 13 18 18 N 1.46586 * 108.11104 * 125.22844 * 17 15 14 19 19 C 1.36931 * 125.31370 * 181.01869 * 18 17 15 20 20 H 1.08002 * 120.00006 * 0.02562 * 19 18 17 21 21 C 1.38819 * 119.99960 * 180.02562 * 19 18 17 22 22 N 1.31611 * 120.00038 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99822 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47414 * 59.99861 * 23 21 19 25 25 H 1.48500 * 109.47250 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.47170 * 299.99865 * 23 21 19 27 27 C 1.46718 * 109.37400 * 1.28268 * 18 17 15 28 28 C 1.48846 * 125.33912 * 174.49328 * 12 10 9 29 29 H 1.09003 * 111.94968 * 56.53916 * 28 12 10 30 30 H 1.09004 * 109.47112 * 264.70635 * 1 2 3 31 31 H 1.09001 * 109.47286 * 24.70480 * 1 2 3 32 32 H 1.09003 * 109.47026 * 144.70658 * 1 2 3 33 33 H 1.08997 * 109.46621 * 359.95667 * 5 4 3 34 34 H 1.08002 * 127.32386 * 180.02562 * 8 4 3 35 35 H 1.08999 * 110.37174 * 85.60319 * 13 12 10 36 36 H 1.09006 * 110.46836 * 323.31793 * 13 12 10 37 37 H 1.09000 * 110.97324 * 204.65991 * 14 13 12 38 38 H 1.08994 * 111.00907 * 80.89213 * 14 13 12 39 39 H 1.08995 * 109.74628 * 5.55450 * 17 15 14 40 40 H 1.09008 * 109.74324 * 244.89820 * 17 15 14 41 41 H 0.97002 * 120.00451 * 179.97438 * 22 21 19 42 42 H 1.09006 * 109.98552 * 101.40149 * 27 18 17 43 43 H 1.09000 * 109.98695 * 222.70616 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0498 0.0000 4 6 3.4735 0.7274 -0.0060 5 6 4.6335 1.6893 -0.0132 6 9 5.4186 1.4816 1.1259 7 9 5.4082 1.4771 -1.1586 8 6 3.5612 -0.6666 -0.0036 9 6 2.2523 -1.1163 0.0041 10 6 1.7993 -2.5164 0.0097 11 8 0.6177 -2.7729 0.1418 12 7 2.6939 -3.5147 -0.1316 13 6 4.1306 -3.3454 -0.4141 14 6 4.5610 -4.6723 -1.0866 15 6 3.7216 -5.7123 -0.2982 16 1 3.5924 -6.6543 -0.8312 17 6 4.3510 -5.8856 1.0939 18 7 3.3119 -5.6379 2.0978 19 6 3.4958 -5.6791 3.4541 20 1 4.4699 -5.9086 3.8603 21 6 2.4302 -5.4259 4.3070 22 7 1.2433 -5.1458 3.8120 23 14 2.6813 -5.4814 6.1572 24 1 3.7011 -4.4755 6.5488 25 1 1.3984 -5.1766 6.8402 26 1 3.1441 -6.8357 6.5536 27 6 2.0427 -5.3451 1.4226 28 6 2.3864 -4.9674 -0.0277 29 1 1.6079 -5.2701 -0.7280 30 1 -0.3633 -0.0948 1.0233 31 1 -0.3634 0.9336 -0.4295 32 1 -0.3633 -0.8388 -0.5938 33 1 4.2571 2.7122 -0.0135 34 1 4.4595 -1.2662 -0.0068 35 1 4.6841 -3.1926 0.5124 36 1 4.2894 -2.5072 -1.0927 37 1 5.6281 -4.8496 -0.9523 38 1 4.2966 -4.6783 -2.1440 39 1 5.1643 -5.1714 1.2218 40 1 4.7326 -6.9010 1.2017 41 1 0.4986 -4.9692 4.4080 42 1 1.4016 -6.2266 1.4359 43 1 1.5417 -4.5122 1.9159 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076035014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:50 Heat of formation + Delta-G solvation = -26.046846 kcal Electronic energy + Delta-G solvation = -31035.401601 eV Core-core repulsion = 26560.848913 eV Total energy + Delta-G solvation = -4474.552688 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -49.97606 -47.99277 -43.87334 -41.42020 -39.26938 -36.62732 -34.95164 -34.11158 -32.59008 -32.20495 -30.38108 -29.74748 -28.12781 -26.69145 -26.29823 -25.04431 -23.18422 -22.92521 -21.84328 -20.81820 -20.43001 -18.95699 -18.43283 -18.33582 -18.30013 -17.83008 -17.34198 -17.24141 -16.85381 -16.82914 -15.94245 -15.65257 -15.47407 -15.17507 -14.90539 -14.61123 -14.46583 -14.36502 -14.02728 -13.96865 -13.87841 -13.78110 -13.52612 -13.45204 -13.06830 -12.95972 -12.80811 -12.65558 -12.41386 -12.18630 -12.08170 -11.84678 -11.77297 -11.57180 -11.42503 -11.17486 -10.73439 -10.57823 -10.32130 -9.70828 -8.87376 -7.80841 -5.22664 0.01790 0.99724 1.04891 1.41160 1.44424 1.50648 1.83544 2.05886 2.46448 2.56469 3.12819 3.17533 3.31217 3.41426 3.56826 3.66191 3.75625 3.85561 3.98539 4.02960 4.04130 4.18985 4.20923 4.28215 4.40718 4.44342 4.50363 4.55396 4.58242 4.73339 4.81621 4.91523 5.02134 5.08200 5.15905 5.25756 5.36969 5.37230 5.44390 5.54380 5.82801 6.26828 6.38786 6.60981 6.94186 7.08249 7.79559 8.39774 9.22133 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.004093 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.885252 B = 6840.116279 C = 7170.144110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.250 5.250 3 N -0.242 5.242 4 C -0.069 4.069 5 C 0.369 3.631 6 F -0.201 7.201 7 F -0.194 7.194 8 C -0.162 4.162 9 C -0.039 4.039 10 C 0.594 3.406 11 O -0.571 6.571 12 N -0.586 5.586 13 C 0.084 3.916 14 C -0.105 4.105 15 C -0.097 4.097 16 H 0.126 0.874 17 C 0.133 3.867 18 N -0.619 5.619 19 C -0.236 4.236 20 H 0.085 0.915 21 C -0.068 4.068 22 N -0.949 5.949 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.299 1.299 26 H -0.273 1.273 27 C 0.166 3.834 28 C 0.123 3.877 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.165 0.835 34 H 0.188 0.812 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.038 0.962 40 H 0.028 0.972 41 H 0.242 0.758 42 H -0.013 1.013 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.987 11.318 -14.946 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.039 5.039 3 N -0.078 5.078 4 C -0.225 4.225 5 C 0.314 3.686 6 F -0.182 7.182 7 F -0.175 7.175 8 C -0.190 4.190 9 C -0.166 4.166 10 C 0.381 3.619 11 O -0.451 6.451 12 N -0.318 5.318 13 C -0.038 4.038 14 C -0.143 4.143 15 C -0.116 4.116 16 H 0.144 0.856 17 C 0.009 3.991 18 N -0.345 5.345 19 C -0.365 4.365 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.598 5.598 23 Si 0.803 3.197 24 H -0.204 1.204 25 H -0.225 1.225 26 H -0.199 1.199 27 C 0.040 3.960 28 C 0.020 3.980 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.149 0.851 32 H 0.119 0.881 33 H 0.182 0.818 34 H 0.205 0.795 35 H 0.082 0.918 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.121 0.879 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.005 0.995 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.380 12.138 -14.689 19.800 hybrid contribution -0.070 -1.094 1.676 2.003 sum 5.310 11.044 -13.013 17.874 Atomic orbital electron populations 1.22565 0.70370 1.06983 1.05534 1.45885 1.09003 1.01145 1.47889 1.72928 1.03006 1.13717 1.18162 1.22678 0.93170 0.94794 1.11894 1.19389 0.79341 0.99010 0.70852 1.93028 1.76525 1.96741 1.51929 1.93017 1.76922 1.96681 1.50913 1.22760 0.96700 0.94649 1.04939 1.21381 0.91838 0.89526 1.13895 1.16684 0.84907 0.83133 0.77140 1.90778 1.17412 1.84648 1.52284 1.48518 1.09787 1.05450 1.68012 1.22969 0.79260 1.01108 1.00425 1.22865 1.01291 0.90403 0.99706 1.23106 0.92725 0.99815 0.95996 0.85570 1.21482 0.91633 0.98206 0.87827 1.44432 1.06265 1.82314 1.01512 1.19397 0.95648 1.39829 0.81663 0.89682 1.25645 0.95497 1.02533 1.02419 1.70187 1.00747 1.55281 1.33600 0.85207 0.76202 0.78289 0.80014 1.20392 1.22539 1.19870 1.21253 0.87897 0.97652 0.89178 1.22939 0.99030 0.78692 0.97364 0.88945 0.89565 0.85145 0.88085 0.81783 0.79496 0.91841 0.87631 0.86773 0.87930 0.94444 0.95360 0.94861 0.99512 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.00 10.58 127.77 1.35 3.35 16 2 N -0.25 -7.42 3.75 -356.02 -1.33 -8.76 16 3 N -0.24 -6.61 11.90 -47.49 -0.57 -7.17 16 4 C -0.07 -1.78 6.65 43.05 0.29 -1.50 16 5 C 0.37 7.14 5.80 71.24 0.41 7.55 16 6 F -0.20 -4.68 17.32 44.97 0.78 -3.90 16 7 F -0.19 -3.89 17.32 44.97 0.78 -3.11 16 8 C -0.16 -4.63 9.20 22.66 0.21 -4.42 16 9 C -0.04 -1.29 6.88 40.78 0.28 -1.01 16 10 C 0.59 23.02 7.43 86.58 0.64 23.66 16 11 O -0.57 -25.63 15.00 -4.13 -0.06 -25.70 16 12 N -0.59 -20.58 3.08 -784.74 -2.42 -23.00 16 13 C 0.08 2.15 4.67 86.84 0.41 2.56 16 14 C -0.10 -2.06 6.31 31.98 0.20 -1.86 16 15 C -0.10 -2.77 4.19 -9.01 -0.04 -2.80 16 16 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 17 C 0.13 4.95 6.41 86.62 0.56 5.51 16 18 N -0.62 -31.48 3.38 -698.27 -2.36 -33.83 16 19 C -0.24 -13.32 10.25 84.04 0.86 -12.46 16 20 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 21 C -0.07 -4.00 5.48 84.87 0.47 -3.53 16 22 N -0.95 -59.78 10.17 21.65 0.22 -59.56 16 23 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 26 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 27 C 0.17 8.54 5.26 86.59 0.46 8.99 16 28 C 0.12 4.61 3.74 45.57 0.17 4.78 16 29 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.10 2.58 6.82 -2.39 -0.02 2.56 16 33 H 0.17 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.19 4.64 5.00 -2.91 -0.01 4.62 16 35 H 0.06 1.83 7.11 -2.39 -0.02 1.82 16 36 H 0.11 2.17 5.90 -2.38 -0.01 2.16 16 37 H 0.11 1.70 7.97 -2.39 -0.02 1.68 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.32 6.76 -2.39 -0.02 1.31 16 40 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.24 15.08 8.31 -92.71 -0.77 14.30 16 42 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 43 H 0.06 3.45 5.61 -2.39 -0.01 3.43 16 Total: -1.00 -79.08 352.10 4.39 -74.69 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 1.06 Total: 12.30 kcal Atomic # 6 Polarization: 22.55 SS G_CDS: 6.26 Total: 28.81 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -6.46 Total: -132.32 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.70 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 1.56 Total: -7.01 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -79.08 4.39 -74.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076035014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.647 kcal (2) G-P(sol) polarization free energy of solvation -79.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds