Wall clock time and date at job start Sat Apr 11 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48503 * 109.47103 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47349 * 300.00021 * 3 2 1 6 6 H 1.48498 * 109.47247 * 60.00032 * 3 2 1 7 7 C 1.38813 * 119.99635 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99599 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00565 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.64422 * 359.95993 * 9 7 2 11 11 C 1.55122 * 104.94158 * 204.03864 * 10 9 7 12 12 H 1.09007 * 110.93590 * 81.21734 * 11 10 9 13 13 O 1.42896 * 111.16327 * 205.12972 * 11 10 9 14 14 C 1.55159 * 101.48661 * 323.22547 * 11 10 9 15 15 H 1.08999 * 110.71354 * 276.83199 * 14 11 10 16 16 N 1.46497 * 110.72048 * 153.73212 * 14 11 10 17 17 C 1.34777 * 119.99525 * 157.43606 * 16 14 11 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 C 1.50703 * 109.47148 * 180.28037 * 19 17 16 21 21 C 1.36125 * 120.16899 * 264.72645 * 20 19 17 22 22 C 1.39341 * 120.99165 * 179.72111 * 21 20 19 23 23 C 1.36123 * 120.98213 * 0.55232 * 22 21 20 24 24 C 1.40502 * 119.65701 * 359.73655 * 23 22 21 25 25 C 1.40544 * 121.28246 * 179.97438 * 24 23 22 26 26 C 1.36088 * 119.65460 * 180.02562 * 25 24 23 27 27 C 1.39385 * 120.98831 * 0.02562 * 26 25 24 28 28 C 1.36091 * 120.99709 * 359.97438 * 27 26 25 29 29 C 1.40497 * 120.17697 * 85.00012 * 20 19 17 30 30 C 1.47015 * 125.64896 * 180.02562 * 9 7 2 31 31 H 0.96998 * 119.99988 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.36642 * 323.00160 * 10 9 7 33 33 H 1.08993 * 110.36884 * 85.21423 * 10 9 7 34 34 H 0.96702 * 114.00084 * 292.17127 * 13 11 10 35 35 H 0.97000 * 120.00580 * 337.44351 * 16 14 11 36 36 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 37 37 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 38 38 H 1.07998 * 119.50707 * 359.96755 * 21 20 19 39 39 H 1.07995 * 119.51030 * 180.30872 * 22 21 20 40 40 H 1.08000 * 120.17423 * 179.75166 * 23 22 21 41 41 H 1.07999 * 120.16994 * 359.97438 * 25 24 23 42 42 H 1.08001 * 119.50653 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.50204 * 180.02562 * 27 26 25 44 44 H 1.07996 * 120.17649 * 180.02562 * 28 27 26 45 45 H 1.09000 * 109.88553 * 59.48996 * 30 9 7 46 46 H 1.09004 * 110.00988 * 298.39101 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5332 0.0008 11 6 -0.4043 -3.9350 0.6108 12 1 -0.3566 -3.9013 1.6993 13 8 -1.6576 -4.4622 0.1713 14 6 0.7784 -4.7525 0.0274 15 1 0.5470 -5.1006 -0.9793 16 7 1.1093 -5.8810 0.9009 17 6 1.7587 -6.9515 0.4019 18 8 2.0695 -6.9802 -0.7700 19 6 2.1045 -8.1097 1.3019 20 6 2.8282 -9.1654 0.5062 21 6 2.1403 -10.2130 -0.0251 22 6 2.7911 -11.1956 -0.7685 23 6 4.1355 -11.1423 -0.9754 24 6 4.8801 -10.0792 -0.4376 25 6 6.2695 -9.9906 -0.6297 26 6 6.9582 -8.9466 -0.0933 27 6 6.3064 -7.9611 0.6461 28 6 4.9624 -8.0138 0.8528 29 6 4.2171 -9.0766 0.3139 30 6 1.9318 -3.7275 -0.0005 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5988 -1.7587 0.6167 33 1 -0.5285 -2.4851 -1.0170 34 1 -2.4264 -3.9837 0.5105 35 1 0.8609 -5.8580 1.8383 36 1 2.7460 -7.7618 2.1117 37 1 1.1901 -8.5319 1.7185 38 1 1.0735 -10.2816 0.1284 39 1 2.2211 -12.0137 -1.1833 40 1 4.6272 -11.9131 -1.5503 41 1 6.7880 -10.7476 -1.1993 42 1 8.0259 -8.8811 -0.2421 43 1 6.8766 -7.1428 1.0606 44 1 4.4708 -7.2428 1.4275 45 1 2.5587 -3.8506 0.8826 46 1 2.5292 -3.8664 -0.9016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078056113.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:59 Heat of formation + Delta-G solvation = -10.329734 kcal Electronic energy + Delta-G solvation = -28922.267836 eV Core-core repulsion = 24970.333472 eV Total energy + Delta-G solvation = -3951.934364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.74338 -39.48370 -37.81622 -36.57784 -35.09934 -34.03124 -33.83461 -31.76776 -30.40789 -30.30061 -28.65996 -27.66567 -26.61859 -24.41514 -23.41658 -23.06523 -21.62334 -20.71326 -20.18155 -19.86438 -17.63828 -17.34326 -17.12987 -16.99291 -16.55438 -16.34305 -15.63719 -15.09171 -14.85488 -14.40319 -14.29983 -14.02598 -13.83407 -13.57060 -13.54753 -13.31009 -13.17191 -12.89238 -12.79084 -12.40909 -12.10755 -11.99021 -11.79322 -11.52364 -11.39106 -11.28155 -11.02878 -10.99047 -10.86996 -10.85380 -10.17944 -10.02848 -9.95007 -9.74977 -9.70088 -9.27088 -8.76582 -8.74274 -8.66327 -7.92420 -6.93952 -5.74335 -3.16698 0.43932 0.96399 1.95483 2.81539 2.89528 3.35278 3.38450 3.42316 3.44643 4.06640 4.35759 4.38548 4.59898 4.63659 4.70598 4.80847 4.90108 4.98400 5.05199 5.10812 5.24487 5.28339 5.29224 5.39757 5.40595 5.40656 5.61149 5.63465 5.68110 5.84713 5.87628 6.02121 6.07759 6.12939 6.16024 6.18256 6.34723 6.45230 6.47695 6.55663 6.66317 6.74213 6.91887 6.93604 7.29859 7.50922 7.66635 7.73709 8.07755 8.23331 8.43449 9.11961 9.72392 10.34818 11.30007 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.002732 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.705448 B =10247.794027 C =11762.383434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.600 5.600 10 C 0.130 3.870 11 C 0.067 3.933 12 H 0.061 0.939 13 O -0.566 6.566 14 C 0.143 3.857 15 H 0.099 0.901 16 N -0.717 5.717 17 C 0.513 3.487 18 O -0.527 6.527 19 C -0.107 4.107 20 C -0.046 4.046 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.110 4.110 24 C -0.051 4.051 25 C -0.109 4.109 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.100 4.100 29 C -0.034 4.034 30 C 0.131 3.869 31 H 0.253 0.747 32 H 0.113 0.887 33 H 0.025 0.975 34 H 0.377 0.623 35 H 0.398 0.602 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.029 0.971 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -21.644 5.471 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.748 3.252 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.006 3.994 12 H 0.079 0.921 13 O -0.370 6.370 14 C 0.038 3.962 15 H 0.117 0.883 16 N -0.368 5.368 17 C 0.298 3.702 18 O -0.403 6.403 19 C -0.147 4.147 20 C -0.047 4.047 21 C -0.125 4.125 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.051 4.051 25 C -0.127 4.127 26 C -0.135 4.135 27 C -0.135 4.135 28 C -0.118 4.118 29 C -0.034 4.034 30 C 0.004 3.996 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.043 0.957 34 H 0.224 0.776 35 H 0.232 0.768 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.047 0.953 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.967 -21.863 4.291 23.065 hybrid contribution -0.054 1.354 0.608 1.486 sum 5.913 -20.509 4.900 21.899 Atomic orbital electron populations 1.69745 1.04943 1.24860 1.57732 1.24803 0.95786 0.97836 1.02221 0.85950 0.78700 0.83286 0.77281 1.20436 1.21649 1.21679 1.19156 0.90641 0.82123 1.43057 0.90156 1.44290 1.01487 0.99804 1.87181 1.22575 0.85536 0.91920 0.99584 1.23668 0.82670 0.96089 0.96942 0.92073 1.86415 1.15566 1.58761 1.76284 1.21992 0.94006 0.85148 0.95078 0.88274 1.45991 1.59279 1.18199 1.13305 1.20389 0.77925 0.83137 0.88767 1.90748 1.52186 1.80279 1.17066 1.20725 1.02016 0.93697 0.98222 1.19092 0.92358 0.94888 0.98335 1.20685 0.99766 0.94368 0.97720 1.20777 0.94693 0.98886 0.98675 1.20979 0.94355 0.97584 0.99909 1.18043 0.93746 0.95125 0.98190 1.20986 0.92885 0.98776 1.00083 1.20844 1.00023 0.94629 0.97990 1.20864 0.94780 0.98875 0.99024 1.21049 0.94248 0.97046 0.99454 1.17851 0.92821 0.94929 0.97821 1.21611 0.93718 0.85347 0.98944 0.93643 0.86979 0.95708 0.77602 0.76850 0.87815 0.87753 0.86038 0.85982 0.85751 0.85744 0.86092 0.85942 0.85800 0.95277 0.94940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 10.09 55.49 0.56 -25.71 16 2 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.60 -15.31 3.40 -169.94 -0.58 -15.89 16 10 C 0.13 3.08 5.63 -2.41 -0.01 3.06 16 11 C 0.07 1.24 4.06 -24.47 -0.10 1.14 16 12 H 0.06 1.04 8.01 -51.92 -0.42 0.62 16 13 O -0.57 -9.60 13.48 -35.23 -0.47 -10.08 16 14 C 0.14 2.69 3.00 -66.10 -0.20 2.49 16 15 H 0.10 2.12 7.62 -51.93 -0.40 1.73 16 16 N -0.72 -10.54 5.12 -52.03 -0.27 -10.80 16 17 C 0.51 7.72 7.82 -10.98 -0.09 7.64 16 18 O -0.53 -10.38 15.72 5.55 0.09 -10.29 16 19 C -0.11 -1.14 5.23 -29.03 -0.15 -1.30 16 20 C -0.05 -0.58 4.38 -104.53 -0.46 -1.03 16 21 C -0.11 -1.22 9.57 -39.93 -0.38 -1.60 16 22 C -0.11 -1.16 9.95 -39.93 -0.40 -1.56 16 23 C -0.11 -1.17 9.77 -39.49 -0.39 -1.55 16 24 C -0.05 -0.63 5.74 -106.83 -0.61 -1.24 16 25 C -0.11 -1.16 9.77 -39.49 -0.39 -1.54 16 26 C -0.12 -1.21 9.95 -39.93 -0.40 -1.60 16 27 C -0.12 -1.32 9.95 -39.93 -0.40 -1.72 16 28 C -0.10 -1.25 9.28 -39.48 -0.37 -1.62 16 29 C -0.03 -0.45 5.74 -106.83 -0.61 -1.07 16 30 C 0.13 2.85 7.00 -3.07 -0.02 2.83 16 31 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 33 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.38 4.83 9.12 45.56 0.42 5.24 16 35 H 0.40 4.58 8.54 -40.82 -0.35 4.23 16 36 H 0.10 0.90 6.70 -51.92 -0.35 0.55 16 37 H 0.10 0.83 8.04 -51.93 -0.42 0.42 16 38 H 0.12 1.15 8.04 -52.49 -0.42 0.72 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.12 1.43 6.49 -52.49 -0.34 1.09 16 45 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 380.44 15.07 5.73 5.73 Total: -1.00 -34.83 380.44 -10.68 -45.51 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -5.50 Total: 10.10 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -5.22 Total: -5.37 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.28 Total: -52.40 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.39 Total: -20.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.83 -10.68 -45.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078056113.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.182 kcal (2) G-P(sol) polarization free energy of solvation -34.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds