Wall clock time and date at job start Sat Apr 11 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99673 * 2 1 4 4 H 1.09000 * 110.78564 * 31.78938 * 3 2 1 5 5 C 1.54325 * 110.72271 * 268.54262 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52456 * 5 3 2 7 7 C 1.36936 * 125.64999 * 178.82784 * 6 5 3 8 8 H 1.08004 * 120.00405 * 180.02562 * 7 6 5 9 9 C 1.38812 * 120.00093 * 0.02562 * 7 6 5 10 10 N 1.31626 * 119.99909 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46967 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47375 * 120.00211 * 11 9 7 14 14 H 1.48496 * 109.47606 * 240.00311 * 11 9 7 15 15 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 6 5 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 6 18 18 N 1.46502 * 111.00105 * 204.88119 * 16 15 6 19 19 C 1.34783 * 119.99989 * 273.54475 * 18 16 15 20 20 O 1.21283 * 119.99981 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00227 * 180.02562 * 19 18 16 22 22 N 1.46495 * 109.47464 * 180.02562 * 21 19 18 23 23 C 1.46407 * 119.53572 * 269.72854 * 22 21 19 24 24 C 1.53353 * 109.34733 * 144.04424 * 23 22 21 25 25 C 1.50804 * 109.08853 * 46.99651 * 24 23 22 26 26 O 1.21238 * 120.01606 * 145.63091 * 25 24 23 27 27 N 1.34554 * 119.96698 * 325.61084 * 25 24 23 28 28 C 1.34292 * 119.53285 * 89.99744 * 22 21 19 29 29 O 1.21534 * 119.21038 * 5.65314 * 28 22 21 30 30 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47041 * 299.99697 * 1 2 3 32 32 H 1.08997 * 109.46714 * 59.99917 * 1 2 3 33 33 H 1.09002 * 109.88192 * 100.02896 * 5 3 2 34 34 H 1.09000 * 109.88128 * 339.01749 * 5 3 2 35 35 H 0.96997 * 120.00493 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.36956 * 142.96999 * 15 6 5 37 37 H 1.09001 * 110.36709 * 265.18192 * 15 6 5 38 38 H 0.96999 * 120.00092 * 93.54637 * 18 16 15 39 39 H 1.09004 * 109.47342 * 300.00652 * 21 19 18 40 40 H 1.09006 * 109.46955 * 59.99736 * 21 19 18 41 41 H 1.08998 * 109.46829 * 264.17984 * 23 22 21 42 42 H 1.09001 * 109.46236 * 24.15212 * 23 22 21 43 43 H 1.08993 * 109.69483 * 287.03286 * 24 23 22 44 44 H 1.09010 * 109.48446 * 166.83075 * 24 23 22 45 45 H 0.97001 * 119.50706 * 184.41137 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0111 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5567 2.4929 -1.4486 7 6 4.1551 3.0540 -2.5451 8 1 5.1088 3.5508 -2.4449 9 6 3.5359 2.9842 -3.7855 10 7 2.3733 2.3791 -3.9076 11 14 4.3516 3.7501 -5.2812 12 1 5.6424 4.3654 -4.8803 13 1 4.6000 2.7002 -6.3017 14 1 3.4614 4.7932 -5.8509 15 6 4.1009 2.4935 -0.0785 16 6 3.4384 1.2751 0.6118 17 1 3.9535 0.3505 0.3510 18 7 3.3929 1.4555 2.0650 19 6 4.4462 1.0907 2.8227 20 8 5.4318 0.6135 2.3015 21 6 4.3991 1.2757 4.3175 22 7 5.6553 0.8067 4.9074 23 6 5.7763 -0.5891 5.3324 24 6 7.2020 -1.0824 5.0568 25 6 8.1849 -0.0542 5.5576 26 8 9.2471 -0.4071 6.0237 27 7 7.8828 1.2551 5.4866 28 6 6.6779 1.6645 5.0559 29 8 6.5094 2.8392 4.7940 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.4718 2.4692 -1.7521 34 1 2.3063 0.9351 -2.1187 35 1 1.9407 2.3300 -4.7744 36 1 5.1841 2.3745 -0.1004 37 1 3.8316 3.4158 0.4362 38 1 2.6047 1.8375 2.4818 39 1 4.2616 2.3321 4.5487 40 1 3.5679 0.7027 4.7286 41 1 5.5622 -0.6642 6.3985 42 1 5.0666 -1.2010 4.7756 43 1 7.3401 -1.2267 3.9854 44 1 7.3666 -2.0268 5.5758 45 1 8.5447 1.9132 5.7506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082305666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:03 Heat of formation + Delta-G solvation = -95.323051 kcal Electronic energy + Delta-G solvation = -30433.786927 eV Core-core repulsion = 26067.317713 eV Total energy + Delta-G solvation = -4366.469214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.93589 -39.88584 -39.07128 -38.14735 -36.47507 -35.90606 -34.89228 -34.11057 -32.04970 -31.62091 -29.10995 -28.17455 -26.71576 -26.18055 -25.41961 -24.24906 -23.29141 -21.14504 -20.58107 -20.02829 -19.35169 -18.64509 -18.06675 -17.54243 -17.10028 -16.65285 -16.45930 -15.87024 -15.49458 -15.23123 -14.93448 -14.83190 -14.74368 -14.57912 -14.37853 -14.21560 -13.78719 -13.58288 -13.28528 -13.08370 -12.73723 -12.48576 -12.20454 -12.00114 -11.93045 -11.55734 -11.27306 -11.03625 -10.97673 -10.83085 -10.78065 -10.55610 -10.48726 -10.24525 -10.09858 -10.00727 -9.80724 -9.27519 -9.06097 -8.82947 -8.62298 -6.90510 -5.75092 -3.09853 1.43966 1.97807 2.63720 2.73795 2.84297 3.31335 3.39879 3.45842 3.48330 4.00159 4.07061 4.13448 4.48388 4.53647 4.55690 4.69305 4.90313 4.98070 5.05770 5.09265 5.33494 5.34906 5.46632 5.53047 5.59890 5.62039 5.67623 5.77700 5.82230 5.89178 6.00014 6.11382 6.13543 6.47354 6.62541 6.80916 7.02526 7.20041 7.20863 7.45002 7.56485 7.68828 7.82175 7.85643 8.18076 8.27790 9.16303 9.76152 10.38818 11.36465 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.002809 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.600791 B = 9964.499979 C =11217.771254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.163 3.837 6 N -0.600 5.600 7 C -0.227 4.227 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.923 5.923 11 Si 0.914 3.086 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.137 3.863 17 H 0.103 0.897 18 N -0.713 5.713 19 C 0.494 3.506 20 O -0.529 6.529 21 C 0.109 3.891 22 N -0.600 5.600 23 C 0.114 3.886 24 C -0.159 4.159 25 C 0.527 3.473 26 O -0.506 6.506 27 N -0.674 5.674 28 C 0.717 3.283 29 O -0.551 6.551 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.252 0.748 36 H 0.050 0.950 37 H 0.024 0.976 38 H 0.397 0.603 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.847 -7.085 22.009 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.038 3.962 6 N -0.328 5.328 7 C -0.355 4.355 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.571 5.571 11 Si 0.745 3.255 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.032 3.968 17 H 0.121 0.879 18 N -0.364 5.364 19 C 0.278 3.722 20 O -0.405 6.405 21 C -0.018 4.018 22 N -0.336 5.336 23 C -0.009 4.009 24 C -0.199 4.199 25 C 0.315 3.685 26 O -0.379 6.379 27 N -0.343 5.343 28 C 0.418 3.582 29 O -0.425 6.425 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.231 0.769 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -0.715 -7.290 21.453 22.669 hybrid contribution -0.025 1.037 -0.686 1.244 sum -0.740 -6.253 20.766 21.700 Atomic orbital electron populations 1.22703 0.81619 1.02030 0.99903 1.87891 1.19193 1.27549 1.95094 1.23860 0.92514 0.84080 0.99847 0.91870 1.21585 0.88630 0.96988 0.89045 1.44263 1.20034 1.65814 1.02700 1.19138 1.02418 1.28700 0.85265 0.90089 1.24814 0.97183 1.00729 0.97641 1.69944 1.16269 1.47684 1.23174 0.86001 0.78423 0.78359 0.82739 1.20410 1.21668 1.21729 1.21822 0.97505 0.93630 0.86688 1.22393 0.96118 1.01010 0.77315 0.87901 1.45900 1.18413 1.64226 1.07869 1.21005 0.83388 0.78318 0.89473 1.90725 1.31707 1.43811 1.74249 1.21359 0.85487 1.04293 0.90687 1.46540 1.13031 1.10294 1.63761 1.21713 0.96964 0.81340 1.00894 1.22318 0.92920 0.98611 1.06097 1.20999 0.88015 0.83168 0.76303 1.90790 1.25029 1.80215 1.41869 1.44236 1.15778 1.10037 1.64225 1.15509 0.80145 0.85075 0.77469 1.91021 1.81996 1.15622 1.53830 0.90258 0.94798 0.93511 0.93378 0.91976 0.93727 0.93189 0.95844 0.76898 0.86001 0.86644 0.90246 0.87860 0.85974 0.85685 0.73320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.88 101.05 1.10 1.55 16 2 O -0.38 -6.49 10.44 -35.23 -0.37 -6.85 16 3 C 0.06 1.00 3.04 -24.76 -0.08 0.92 16 4 H 0.06 0.98 7.75 -51.93 -0.40 0.58 16 5 C 0.16 3.87 5.14 -3.07 -0.02 3.86 16 6 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 7 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 8 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 10 N -0.92 -26.84 10.31 55.49 0.57 -26.27 16 11 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.13 2.80 6.93 -2.53 -0.02 2.78 16 16 C 0.14 2.44 3.05 -65.64 -0.20 2.24 16 17 H 0.10 2.10 7.73 -51.93 -0.40 1.70 16 18 N -0.71 -9.20 5.23 -51.59 -0.27 -9.47 16 19 C 0.49 6.43 7.89 -10.98 -0.09 6.34 16 20 O -0.53 -9.17 16.18 5.55 0.09 -9.08 16 21 C 0.11 0.90 5.84 -5.20 -0.03 0.87 16 22 N -0.60 -5.43 2.28 -180.96 -0.41 -5.84 16 23 C 0.11 0.63 6.60 -3.91 -0.03 0.61 16 24 C -0.16 -1.07 6.30 -27.65 -0.17 -1.24 16 25 C 0.53 5.18 7.76 -11.03 -0.09 5.09 16 26 O -0.51 -6.44 17.93 5.59 0.10 -6.34 16 27 N -0.67 -6.80 5.18 -16.02 -0.08 -6.89 16 28 C 0.72 8.41 8.22 -87.74 -0.72 7.69 16 29 O -0.55 -8.38 16.57 5.34 0.09 -8.29 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.36 8.11 -51.93 -0.42 -0.06 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 34 H 0.06 1.69 7.29 -51.93 -0.38 1.31 16 35 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.40 3.73 8.52 -40.82 -0.35 3.39 16 39 H 0.12 1.01 7.27 -51.93 -0.38 0.63 16 40 H 0.12 0.46 8.06 -51.93 -0.42 0.04 16 41 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.10 0.45 8.01 -51.93 -0.42 0.03 16 43 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.13 0.53 8.14 -51.92 -0.42 0.11 16 45 H 0.43 3.86 8.86 -40.82 -0.36 3.50 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -38.13 378.02 -7.19 -45.32 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.42 Total: 2.91 kcal Atomic # 6 Polarization: 24.42 SS G_CDS: -0.58 Total: 23.84 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -0.77 Total: -64.44 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.09 Total: -30.56 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.13 -7.19 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082305666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.003 kcal (2) G-P(sol) polarization free energy of solvation -38.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds