Wall clock time and date at job start Sat Apr 11 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42893 * 113.99673 * 2 1 4 4 H 1.09000 * 110.78564 * 31.78938 * 3 2 1 5 5 C 1.54325 * 110.72271 * 268.54262 * 3 2 1 6 6 N 1.47018 * 107.40412 * 219.52456 * 5 3 2 7 7 C 1.36936 * 125.64999 * 178.82784 * 6 5 3 8 8 H 1.08004 * 120.00405 * 180.02562 * 7 6 5 9 9 C 1.38812 * 120.00093 * 0.02562 * 7 6 5 10 10 N 1.31626 * 119.99909 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00506 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46967 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47375 * 120.00211 * 11 9 7 14 14 H 1.48496 * 109.47606 * 240.00311 * 11 9 7 15 15 C 1.47426 * 108.70517 * 358.86539 * 6 5 3 16 16 C 1.54914 * 104.82992 * 24.12623 * 15 6 5 17 17 H 1.09000 * 111.00339 * 81.07133 * 16 15 6 18 18 N 1.46502 * 111.00105 * 204.88119 * 16 15 6 19 19 C 1.34783 * 119.99989 * 273.54475 * 18 16 15 20 20 O 1.21283 * 119.99981 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00227 * 180.02562 * 19 18 16 22 22 N 1.46495 * 109.47464 * 180.02562 * 21 19 18 23 23 C 1.46407 * 119.53572 * 269.72854 * 22 21 19 24 24 C 1.53353 * 109.34733 * 144.04424 * 23 22 21 25 25 C 1.50804 * 109.08853 * 46.99651 * 24 23 22 26 26 O 1.21238 * 120.01606 * 145.63091 * 25 24 23 27 27 N 1.34554 * 119.96698 * 325.61084 * 25 24 23 28 28 C 1.34292 * 119.53285 * 89.99744 * 22 21 19 29 29 O 1.21534 * 119.21038 * 5.65314 * 28 22 21 30 30 H 1.08999 * 109.46666 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47041 * 299.99697 * 1 2 3 32 32 H 1.08997 * 109.46714 * 59.99917 * 1 2 3 33 33 H 1.09002 * 109.88192 * 100.02896 * 5 3 2 34 34 H 1.09000 * 109.88128 * 339.01749 * 5 3 2 35 35 H 0.96997 * 120.00493 * 180.02562 * 10 9 7 36 36 H 1.08999 * 110.36956 * 142.96999 * 15 6 5 37 37 H 1.09001 * 110.36709 * 265.18192 * 15 6 5 38 38 H 0.96999 * 120.00092 * 93.54637 * 18 16 15 39 39 H 1.09004 * 109.47342 * 300.00652 * 21 19 18 40 40 H 1.09006 * 109.46955 * 59.99736 * 21 19 18 41 41 H 1.08998 * 109.46829 * 264.17984 * 23 22 21 42 42 H 1.09001 * 109.46236 * 24.15212 * 23 22 21 43 43 H 1.08993 * 109.69483 * 287.03286 * 24 23 22 44 44 H 1.09010 * 109.48446 * 166.83075 * 24 23 22 45 45 H 0.97001 * 119.50706 * 184.41137 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0111 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5567 2.4929 -1.4486 7 6 4.1551 3.0540 -2.5451 8 1 5.1088 3.5508 -2.4449 9 6 3.5359 2.9842 -3.7855 10 7 2.3733 2.3791 -3.9076 11 14 4.3516 3.7501 -5.2812 12 1 5.6424 4.3654 -4.8803 13 1 4.6000 2.7002 -6.3017 14 1 3.4614 4.7932 -5.8509 15 6 4.1009 2.4935 -0.0785 16 6 3.4384 1.2751 0.6118 17 1 3.9535 0.3505 0.3510 18 7 3.3929 1.4555 2.0650 19 6 4.4462 1.0907 2.8227 20 8 5.4318 0.6135 2.3015 21 6 4.3991 1.2757 4.3175 22 7 5.6553 0.8067 4.9074 23 6 5.7763 -0.5891 5.3324 24 6 7.2020 -1.0824 5.0568 25 6 8.1849 -0.0542 5.5576 26 8 9.2471 -0.4071 6.0237 27 7 7.8828 1.2551 5.4866 28 6 6.6779 1.6645 5.0559 29 8 6.5094 2.8392 4.7940 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.4718 2.4692 -1.7521 34 1 2.3063 0.9351 -2.1187 35 1 1.9407 2.3300 -4.7744 36 1 5.1841 2.3745 -0.1004 37 1 3.8316 3.4158 0.4362 38 1 2.6047 1.8375 2.4818 39 1 4.2616 2.3321 4.5487 40 1 3.5679 0.7027 4.7286 41 1 5.5622 -0.6642 6.3985 42 1 5.0666 -1.2010 4.7756 43 1 7.3401 -1.2267 3.9854 44 1 7.3666 -2.0268 5.5758 45 1 8.5447 1.9132 5.7506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082305666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:02 Heat of formation + Delta-G solvation = -127.600696 kcal Electronic energy + Delta-G solvation = -30435.186591 eV Core-core repulsion = 26067.317713 eV Total energy + Delta-G solvation = -4367.868878 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.72704 -41.03356 -40.09577 -39.45227 -37.51546 -37.19390 -35.76423 -35.55208 -33.72568 -32.47867 -30.69617 -29.44588 -28.12268 -27.49078 -26.01086 -25.96422 -24.18112 -22.53741 -22.10613 -21.47002 -20.12755 -19.37889 -19.19453 -18.78239 -18.34624 -17.83664 -17.58406 -17.19030 -16.78257 -16.29262 -16.09237 -15.88345 -15.72742 -15.65314 -15.59153 -15.44193 -15.05640 -14.75318 -14.55079 -14.27110 -14.02505 -13.63419 -13.60006 -13.25693 -13.03326 -12.86952 -12.80186 -12.58642 -12.55048 -12.28022 -12.05442 -11.89387 -11.84696 -11.60495 -11.40484 -11.38411 -11.22538 -10.79732 -10.56172 -10.11772 -9.90336 -8.98309 -7.90027 -5.27833 0.62838 1.24620 1.43798 1.45077 1.55565 1.63654 1.93343 2.03269 2.34355 2.45569 2.78334 3.29170 3.39192 3.52679 3.59827 3.69952 3.90841 3.95177 4.04838 4.12890 4.14972 4.38085 4.45768 4.47424 4.49567 4.60523 4.64100 4.70066 4.81622 4.85857 4.93641 4.94734 4.98808 5.11369 5.33946 5.36547 5.43074 5.48055 5.65235 6.12391 6.26598 6.33538 6.41976 6.57527 7.02605 7.03621 7.28866 7.67966 8.29944 9.19296 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013937 B = 0.002809 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.600791 B = 9964.499979 C =11217.771254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.394 6.394 3 C 0.080 3.920 4 H 0.100 0.900 5 C 0.171 3.829 6 N -0.622 5.622 7 C -0.249 4.249 8 H 0.078 0.922 9 C -0.060 4.060 10 N -0.947 5.947 11 Si 0.980 3.020 12 H -0.270 1.270 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.130 3.870 16 C 0.158 3.842 17 H 0.074 0.926 18 N -0.698 5.698 19 C 0.491 3.509 20 O -0.577 6.577 21 C 0.116 3.884 22 N -0.596 5.596 23 C 0.109 3.891 24 C -0.155 4.155 25 C 0.527 3.473 26 O -0.540 6.540 27 N -0.674 5.674 28 C 0.711 3.289 29 O -0.594 6.594 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.249 0.751 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.420 0.580 39 H 0.127 0.873 40 H 0.175 0.825 41 H 0.115 0.885 42 H 0.125 0.875 43 H 0.109 0.891 44 H 0.154 0.846 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -7.869 24.488 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C 0.020 3.980 4 H 0.117 0.883 5 C 0.045 3.955 6 N -0.350 5.350 7 C -0.377 4.377 8 H 0.096 0.904 9 C -0.253 4.253 10 N -0.595 5.595 11 Si 0.808 3.192 12 H -0.194 1.194 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.004 3.996 16 C 0.051 3.949 17 H 0.092 0.908 18 N -0.352 5.352 19 C 0.277 3.723 20 O -0.456 6.456 21 C -0.010 4.010 22 N -0.332 5.332 23 C -0.012 4.012 24 C -0.195 4.195 25 C 0.317 3.683 26 O -0.415 6.415 27 N -0.341 5.341 28 C 0.413 3.587 29 O -0.471 6.471 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.036 0.964 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.055 0.945 38 H 0.258 0.742 39 H 0.145 0.855 40 H 0.192 0.808 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.127 0.873 44 H 0.172 0.828 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -2.391 -8.098 23.995 25.437 hybrid contribution 0.500 1.244 -1.454 1.978 sum -1.891 -6.854 22.540 23.635 Atomic orbital electron populations 1.22985 0.79268 1.03922 1.00776 1.87879 1.21750 1.26679 1.94933 1.23467 0.93254 0.85333 0.95909 0.88281 1.21353 0.87137 0.94530 0.92457 1.44527 1.20973 1.65717 1.03776 1.19452 1.02628 1.28964 0.86679 0.90412 1.25640 0.97906 1.01489 1.00277 1.70156 1.17342 1.48584 1.23417 0.84998 0.77823 0.77394 0.79016 1.19437 1.21741 1.21264 1.21920 0.96360 0.95925 0.85443 1.21723 0.95189 0.97764 0.80223 0.90765 1.45639 1.19735 1.64324 1.05452 1.21981 0.82156 0.76698 0.91462 1.90721 1.33460 1.45877 1.75548 1.21587 0.86800 1.05892 0.86759 1.46763 1.12486 1.11356 1.62551 1.22093 0.96345 0.79392 1.03320 1.22403 0.92963 0.98783 1.05316 1.21613 0.88043 0.83292 0.75320 1.90775 1.26604 1.80554 1.43549 1.44268 1.15579 1.10490 1.63792 1.15761 0.80785 0.84973 0.77176 1.90987 1.82743 1.17534 1.55852 0.87996 0.91278 0.95187 0.96083 0.96448 0.94130 0.95555 0.94482 0.74245 0.85489 0.80810 0.86738 0.85669 0.87327 0.82826 0.73355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.88 113.37 1.23 1.85 16 2 O -0.39 -12.86 10.44 -148.98 -1.56 -14.42 16 3 C 0.08 2.76 3.04 31.87 0.10 2.86 16 4 H 0.10 2.75 7.75 -2.39 -0.02 2.73 16 5 C 0.17 8.39 5.14 86.73 0.45 8.83 16 6 N -0.62 -32.99 3.39 -691.97 -2.35 -35.34 16 7 C -0.25 -14.46 10.28 84.03 0.86 -13.60 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 10 N -0.95 -56.95 10.31 21.65 0.22 -56.73 16 11 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 15 C 0.13 5.67 6.93 86.86 0.60 6.27 16 16 C 0.16 5.54 3.05 46.47 0.14 5.68 16 17 H 0.07 3.08 7.73 -2.39 -0.02 3.06 16 18 N -0.70 -16.21 5.23 -435.53 -2.28 -18.49 16 19 C 0.49 11.62 7.89 87.65 0.69 12.31 16 20 O -0.58 -19.65 16.18 -3.04 -0.05 -19.70 16 21 C 0.12 1.46 5.84 85.63 0.50 1.96 16 22 N -0.60 -9.04 2.28 -845.00 -1.93 -10.96 16 23 C 0.11 0.78 6.60 86.52 0.57 1.35 16 24 C -0.15 -1.72 6.30 30.00 0.19 -1.53 16 25 C 0.53 9.90 7.76 87.72 0.68 10.58 16 26 O -0.54 -13.59 17.93 -2.90 -0.05 -13.64 16 27 N -0.67 -13.36 5.18 -441.65 -2.29 -15.65 16 28 C 0.71 15.94 8.22 179.34 1.47 17.41 16 29 O -0.59 -17.88 16.57 -3.82 -0.06 -17.95 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 32 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.02 1.12 7.51 -2.39 -0.02 1.11 16 34 H 0.02 0.99 7.29 -2.39 -0.02 0.97 16 35 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.42 6.08 8.52 -92.71 -0.79 5.29 16 39 H 0.13 1.63 7.27 -2.39 -0.02 1.62 16 40 H 0.17 0.23 8.06 -2.38 -0.02 0.21 16 41 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.13 0.45 8.01 -2.39 -0.02 0.43 16 43 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.15 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.43 7.94 8.86 -92.71 -0.82 7.11 16 Total: -1.00 -89.91 378.02 -0.92 -90.84 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -0.57 Total: 12.33 kcal Atomic # 6 Polarization: 43.02 SS G_CDS: 7.96 Total: 50.98 kcal Atomic # 7 Polarization: -128.54 SS G_CDS: -8.62 Total: -137.16 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -1.72 Total: -65.71 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -89.91 -0.92 -90.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082305666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.765 kcal (2) G-P(sol) polarization free energy of solvation -89.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds