Wall clock time and date at job start Sat Apr 11 2020 06:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99696 * 2 1 4 4 H 1.09001 * 110.64046 * 26.85430 * 3 2 1 5 5 C 1.54328 * 110.71903 * 263.52113 * 3 2 1 6 6 N 1.47022 * 107.27280 * 219.44218 * 5 3 2 7 7 C 1.36929 * 125.64676 * 178.95896 * 6 5 3 8 8 H 1.08002 * 119.99918 * 174.80205 * 7 6 5 9 9 C 1.38811 * 120.00477 * 354.80424 * 7 6 5 10 10 N 1.31618 * 119.99658 * 7.05274 * 9 7 6 11 11 Si 1.86796 * 120.00341 * 187.05548 * 9 7 6 12 12 H 1.48494 * 109.47525 * 94.98394 * 11 9 7 13 13 H 1.48507 * 109.47152 * 214.98936 * 11 9 7 14 14 H 1.48504 * 109.46838 * 334.98398 * 11 9 7 15 15 C 1.47429 * 108.70142 * 358.94440 * 6 5 3 16 16 C 1.54907 * 104.83405 * 24.12370 * 15 6 5 17 17 H 1.09004 * 111.03484 * 81.07818 * 16 15 6 18 18 N 1.46497 * 111.00505 * 204.91823 * 16 15 6 19 19 C 1.34782 * 119.99724 * 267.19300 * 18 16 15 20 20 O 1.21279 * 120.00052 * 0.02562 * 19 18 16 21 21 C 1.50704 * 119.99675 * 179.97438 * 19 18 16 22 22 N 1.46500 * 109.46828 * 180.02562 * 21 19 18 23 23 C 1.35123 * 124.13577 * 269.93952 * 22 21 19 24 24 O 1.21233 * 127.33895 * 0.02562 * 23 22 21 25 25 C 1.51583 * 105.50283 * 179.97438 * 23 22 21 26 26 N 1.47308 * 103.73154 * 0.12709 * 25 23 22 27 27 C 1.46505 * 126.68790 * 179.88695 * 26 25 23 28 28 C 1.33794 * 124.17868 * 90.00328 * 22 21 19 29 29 O 1.21541 * 123.76730 * 0.03299 * 28 22 21 30 30 H 1.09005 * 109.47212 * 299.99754 * 1 2 3 31 31 H 1.08999 * 109.47441 * 59.99942 * 1 2 3 32 32 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.88174 * 338.86636 * 5 3 2 34 34 H 1.09005 * 109.88146 * 100.02431 * 5 3 2 35 35 H 0.97006 * 119.99978 * 179.97438 * 10 9 7 36 36 H 1.09001 * 110.36375 * 265.29154 * 15 6 5 37 37 H 1.08996 * 110.36709 * 142.96644 * 15 6 5 38 38 H 0.97001 * 120.00352 * 87.19974 * 18 16 15 39 39 H 1.09003 * 109.46659 * 60.00629 * 21 19 18 40 40 H 1.08997 * 109.47251 * 300.00681 * 21 19 18 41 41 H 1.09002 * 110.59704 * 241.52082 * 25 23 22 42 42 H 1.08996 * 110.59863 * 118.73199 * 25 23 22 43 43 H 1.09008 * 109.47023 * 90.00396 * 27 26 25 44 44 H 1.08997 * 109.46929 * 209.99546 * 27 26 25 45 45 H 1.08997 * 109.47259 * 330.00214 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3350 2.0266 0.4608 5 6 2.3810 1.7381 -1.4343 6 7 3.6684 2.4440 -1.3582 7 6 4.3539 2.9702 -2.4203 8 1 5.2527 3.5449 -2.2517 9 6 3.8939 2.7649 -3.7138 10 7 2.7289 2.1861 -3.9138 11 14 4.9282 3.3102 -5.1706 12 1 5.7407 2.1662 -5.6567 13 1 4.0376 3.7835 -6.2606 14 1 5.8287 4.4146 -4.7525 15 6 4.0987 2.4919 0.0511 16 6 3.3816 1.2959 0.7256 17 1 3.9155 0.3641 0.5395 18 7 3.2167 1.5254 2.1631 19 6 4.1462 1.0741 3.0284 20 8 5.1194 0.4785 2.6171 21 6 3.9769 1.3106 4.5072 22 7 5.1119 0.7286 5.2278 23 6 5.1449 -0.5396 5.6931 24 8 4.2768 -1.3805 5.5981 25 6 6.4980 -0.6917 6.3592 26 7 7.1270 0.6281 6.1786 27 6 8.4568 1.0345 6.6399 28 6 6.2424 1.3873 5.5073 29 8 6.4465 2.5431 5.1914 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 2.4767 0.8602 -2.0731 34 1 1.6151 2.4052 -1.8299 35 1 2.4072 2.0429 -4.8177 36 1 3.7869 3.4296 0.5112 37 1 5.1800 2.3748 0.1217 38 1 2.4385 2.0019 2.4921 39 1 3.0524 0.8431 4.8463 40 1 3.9346 2.3823 4.7012 41 1 7.0839 -1.4666 5.8648 42 1 6.3805 -0.9187 7.4187 43 1 9.1917 0.8204 5.8638 44 1 8.4560 2.1031 6.8546 45 1 8.7121 0.4823 7.5443 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082360713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:10 Heat of formation + Delta-G solvation = -67.755750 kcal Electronic energy + Delta-G solvation = -30428.368494 eV Core-core repulsion = 26063.094687 eV Total energy + Delta-G solvation = -4365.273806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.56510 -39.70315 -38.83245 -38.14817 -36.40607 -35.94851 -35.32562 -34.10265 -31.87791 -30.56450 -28.90169 -28.02858 -26.97165 -26.32919 -26.09495 -24.16584 -22.72699 -21.51250 -20.57433 -20.30024 -19.95624 -18.07392 -17.82359 -17.10092 -16.96707 -16.71544 -16.27917 -15.85612 -15.46662 -15.24147 -14.95984 -14.76500 -14.63894 -14.47338 -14.29829 -14.23515 -14.04526 -13.52768 -13.25102 -12.97738 -12.90070 -12.79266 -12.53833 -12.17784 -11.89082 -11.56277 -11.22736 -11.17319 -11.01548 -10.80896 -10.74520 -10.62746 -10.49964 -10.13416 -9.99388 -9.79333 -9.64827 -9.33197 -9.14661 -8.76926 -8.56345 -6.88024 -5.73982 -3.07591 1.39188 1.69055 2.56342 2.64736 2.74988 3.29133 3.42329 3.47635 3.49111 3.71680 4.13857 4.31103 4.50686 4.60227 4.66009 4.74216 4.79520 4.90748 5.06258 5.11205 5.18081 5.29437 5.37919 5.47918 5.52609 5.57919 5.64763 5.71239 5.83984 5.92375 6.04375 6.06236 6.15192 6.48598 6.63517 6.80570 6.82674 7.07079 7.24897 7.47703 7.55984 7.73053 7.82112 7.86781 8.20058 8.27208 9.17968 9.78225 10.41685 11.37900 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014194 B = 0.002880 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.237438 B = 9719.582629 C =11160.514202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.064 0.936 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.920 5.920 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 C 0.131 3.869 16 C 0.133 3.867 17 H 0.107 0.893 18 N -0.710 5.710 19 C 0.501 3.499 20 O -0.527 6.527 21 C 0.101 3.899 22 N -0.562 5.562 23 C 0.528 3.472 24 O -0.465 6.465 25 C 0.067 3.933 26 N -0.630 5.630 27 C 0.122 3.878 28 C 0.705 3.295 29 O -0.536 6.536 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.253 0.747 36 H 0.024 0.976 37 H 0.050 0.950 38 H 0.398 0.602 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -4.201 24.982 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.082 0.918 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.099 0.901 9 C -0.202 4.202 10 N -0.567 5.567 11 Si 0.743 3.257 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.027 3.973 17 H 0.125 0.875 18 N -0.361 5.361 19 C 0.285 3.715 20 O -0.403 6.403 21 C -0.025 4.025 22 N -0.307 5.307 23 C 0.315 3.685 24 O -0.334 6.334 25 C -0.059 4.059 26 N -0.370 5.370 27 C -0.019 4.019 28 C 0.408 3.592 29 O -0.409 6.409 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.232 0.768 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.314 -4.561 24.233 24.767 hybrid contribution -0.182 0.671 -0.762 1.032 sum 2.132 -3.889 23.471 23.886 Atomic orbital electron populations 1.22711 0.81722 1.02082 0.99721 1.87922 1.19096 1.27534 1.95029 1.23854 0.92867 0.84115 0.99459 0.91831 1.21574 0.88157 0.97354 0.89023 1.44252 1.21169 1.66602 1.00762 1.19081 1.05785 1.26896 0.84023 0.90113 1.24838 0.97310 1.00709 0.97347 1.69951 1.18372 1.48315 1.20088 0.86081 0.79298 0.78017 0.82283 1.21501 1.21756 1.20551 1.21824 0.97816 0.93772 0.86242 1.22445 0.96570 1.01198 0.77043 0.87510 1.45821 1.24780 1.58244 1.07265 1.20619 0.83419 0.79321 0.88156 1.90742 1.29654 1.40698 1.79168 1.21469 0.88674 1.02401 0.89939 1.45922 1.17384 1.14689 1.52755 1.20923 0.89027 0.81065 0.77438 1.90835 1.42767 1.44064 1.55731 1.22470 0.91713 0.87995 1.03764 1.47400 1.17477 1.12346 1.59786 1.21527 0.78996 1.01899 0.99488 1.15741 0.79957 0.84827 0.78720 1.91002 1.78190 1.14646 1.57083 0.94828 0.93643 0.90237 0.91786 0.93487 0.93647 0.95842 0.93165 0.76820 0.85747 0.85502 0.85859 0.85970 0.91825 0.89874 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.85 101.05 1.10 1.58 16 2 O -0.38 -7.06 10.43 -35.23 -0.37 -7.43 16 3 C 0.06 1.07 3.10 -24.89 -0.08 0.99 16 4 H 0.06 1.04 7.68 -51.93 -0.40 0.64 16 5 C 0.16 4.03 5.16 -3.06 -0.02 4.02 16 6 N -0.60 -15.71 3.39 -170.07 -0.58 -16.28 16 7 C -0.23 -6.55 10.26 -15.06 -0.15 -6.71 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 10 N -0.92 -27.18 10.36 55.49 0.57 -26.61 16 11 Si 0.91 22.47 29.56 -169.99 -5.02 17.44 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 C 0.13 2.87 6.93 -2.53 -0.02 2.85 16 16 C 0.13 2.55 3.15 -65.78 -0.21 2.34 16 17 H 0.11 2.38 7.54 -51.93 -0.39 1.98 16 18 N -0.71 -10.43 5.20 -51.73 -0.27 -10.69 16 19 C 0.50 7.76 7.90 -10.98 -0.09 7.68 16 20 O -0.53 -10.57 16.07 5.56 0.09 -10.48 16 21 C 0.10 1.10 6.19 -5.19 -0.03 1.07 16 22 N -0.56 -6.71 2.10 -121.92 -0.26 -6.97 16 23 C 0.53 5.73 8.33 -10.39 -0.09 5.64 16 24 O -0.46 -6.25 17.78 5.60 0.10 -6.15 16 25 C 0.07 0.44 7.65 -4.32 -0.03 0.40 16 26 N -0.63 -5.48 3.42 -187.95 -0.64 -6.12 16 27 C 0.12 0.67 11.18 59.85 0.67 1.33 16 28 C 0.71 8.92 8.31 -88.02 -0.73 8.19 16 29 O -0.54 -8.59 17.15 5.33 0.09 -8.50 16 30 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.79 7.21 -51.93 -0.37 1.42 16 34 H 0.05 1.24 7.61 -51.93 -0.40 0.84 16 35 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.40 4.32 8.57 -40.82 -0.35 3.97 16 39 H 0.12 1.02 8.01 -51.93 -0.42 0.60 16 40 H 0.13 1.14 7.86 -51.93 -0.41 0.74 16 41 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 44 H 0.08 0.50 8.03 -51.93 -0.42 0.09 16 45 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -39.42 383.16 -6.78 -46.20 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.50 Total: 0.66 kcal Atomic # 6 Polarization: 28.92 SS G_CDS: 0.23 Total: 29.14 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -1.17 Total: -66.68 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.09 Total: -32.55 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -39.42 -6.78 -46.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082360713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.555 kcal (2) G-P(sol) polarization free energy of solvation -39.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds