Wall clock time and date at job start Sat Apr 11 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.47035 * 2 1 4 4 N 1.28432 * 125.18510 * 275.04292 * 3 2 1 5 5 C 1.30841 * 110.97815 * 180.02562 * 4 3 2 6 6 C 1.39802 * 107.87624 * 359.73936 * 5 4 3 7 7 Cl 1.73606 * 127.33732 * 180.26216 * 6 5 4 8 8 C 1.36742 * 125.18602 * 95.08954 * 3 2 1 9 9 C 1.47030 * 126.90929 * 359.96304 * 8 3 2 10 10 O 1.21642 * 120.00072 * 267.97464 * 9 8 3 11 11 N 1.34783 * 119.99974 * 87.96414 * 9 8 3 12 12 C 1.46497 * 119.99822 * 174.68196 * 11 9 8 13 13 H 1.09003 * 109.47544 * 35.00054 * 12 11 9 14 14 C 1.53002 * 109.46974 * 275.00397 * 12 11 9 15 15 C 1.53001 * 109.47130 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47183 * 59.99797 * 15 14 12 17 17 C 1.53002 * 109.47253 * 300.00127 * 16 15 14 18 18 C 1.53000 * 109.47019 * 155.00390 * 12 11 9 19 19 H 1.09003 * 109.46965 * 59.99952 * 18 12 11 20 20 N 1.46494 * 109.47276 * 300.00052 * 18 12 11 21 21 C 1.36938 * 120.00003 * 154.99955 * 20 18 12 22 22 H 1.07994 * 120.00051 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99480 * 180.02562 * 21 20 18 24 24 N 1.31625 * 119.99453 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 120.00577 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47282 * 89.99903 * 25 23 21 27 27 H 1.48500 * 109.47401 * 210.00448 * 25 23 21 28 28 H 1.48502 * 109.46970 * 329.99985 * 25 23 21 29 29 H 1.08998 * 109.47305 * 59.99829 * 1 2 3 30 30 H 1.08999 * 109.46834 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46759 * 299.99762 * 1 2 3 32 32 H 1.09001 * 109.47001 * 239.99750 * 2 1 3 33 33 H 1.08998 * 109.47305 * 120.00171 * 2 1 3 34 34 H 1.08000 * 126.06074 * 180.02562 * 5 4 3 35 35 H 0.97002 * 119.99995 * 354.68956 * 11 9 8 36 36 H 1.09001 * 109.47184 * 60.00442 * 14 12 11 37 37 H 1.09003 * 109.47240 * 299.99624 * 14 12 11 38 38 H 1.09003 * 109.46971 * 300.00044 * 15 14 12 39 39 H 1.09001 * 109.47198 * 180.02562 * 15 14 12 40 40 H 1.08993 * 109.46982 * 60.00222 * 16 15 14 41 41 H 1.08997 * 109.47147 * 180.02562 * 16 15 14 42 42 H 1.09001 * 109.47184 * 179.97438 * 17 16 15 43 43 H 1.09003 * 109.47230 * 299.99954 * 17 16 15 44 44 H 0.97004 * 119.99964 * 334.99523 * 20 18 12 45 45 H 0.97006 * 119.99655 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 7 2.1781 2.1097 -1.0456 5 6 2.6280 3.2960 -0.7258 6 6 2.7681 3.3414 0.6645 7 17 3.3218 4.6781 1.6239 8 6 2.3745 2.0911 1.1132 9 6 2.3401 1.6238 2.5068 10 8 1.3502 1.8136 3.1877 11 7 3.4055 0.9849 3.0298 12 6 3.4181 0.6228 4.4493 13 1 2.4098 0.3546 4.7649 14 6 3.9112 1.8129 5.2748 15 6 3.9250 1.4345 6.7573 16 6 4.8607 0.2430 6.9708 17 6 4.3676 -0.9471 6.1453 18 6 4.3534 -0.5689 4.6633 19 1 5.3617 -0.3007 4.3477 20 7 3.8813 -1.7084 3.8728 21 6 4.7613 -2.6819 3.4816 22 1 5.8033 -2.6099 3.7562 23 6 4.3140 -3.7613 2.7322 24 7 5.1599 -4.6968 2.3558 25 14 2.5116 -3.8862 2.2579 26 1 2.2947 -3.2094 0.9540 27 1 2.1278 -5.3162 2.1432 28 1 1.6792 -3.2324 3.2994 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.8473 4.0994 -1.4134 35 1 4.1638 0.7650 2.4664 36 1 3.2448 2.6619 5.1224 37 1 4.9195 2.0811 4.9593 38 1 2.9169 1.1660 7.0731 39 1 4.2759 2.2825 7.3454 40 1 5.8687 0.5115 6.6550 41 1 4.8702 -0.0269 8.0268 42 1 5.0344 -1.7959 6.2971 43 1 3.3595 -1.2156 6.4611 44 1 2.9453 -1.7733 3.6266 45 1 4.8472 -5.4513 1.8323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085209993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:32 Heat of formation + Delta-G solvation = 16.222961 kcal Electronic energy + Delta-G solvation = -28752.352371 eV Core-core repulsion = 24831.429319 eV Total energy + Delta-G solvation = -3920.923052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.77378 -41.12166 -39.26549 -37.70534 -35.95226 -35.66493 -35.30801 -33.34983 -32.25581 -30.91756 -30.59803 -29.60985 -25.59038 -25.30373 -24.66120 -23.11450 -22.56197 -22.47397 -21.38064 -20.77476 -19.80652 -19.11398 -17.75769 -17.44024 -16.93099 -16.73351 -16.55809 -16.11501 -15.63547 -15.49248 -15.17832 -15.05118 -14.81134 -14.70322 -14.61770 -14.46401 -14.00671 -13.72626 -13.71820 -13.23205 -13.09559 -12.98656 -12.87087 -12.80437 -12.48180 -12.40984 -12.21416 -12.10499 -11.85270 -11.78996 -11.62763 -11.51087 -11.42472 -11.11186 -10.92213 -10.46653 -10.19342 -9.90743 -9.32270 -8.00939 -5.34140 0.29475 0.60841 1.09182 1.31153 1.37335 1.38085 1.44230 1.61791 2.00963 2.46845 3.28191 3.30566 3.35061 3.45071 3.71169 3.77275 3.81291 4.05490 4.07167 4.10137 4.16241 4.22571 4.24787 4.39040 4.42462 4.54191 4.56268 4.62904 4.64984 4.91962 4.95919 4.97123 5.04521 5.08875 5.22457 5.27044 5.27657 5.39990 5.45919 5.48503 5.60078 5.79282 6.21842 6.24520 6.76619 6.85835 7.07095 7.82089 8.00853 9.20240 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.005477 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.199289 B = 5110.612397 C = 7353.347546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.260 5.260 4 N -0.281 5.281 5 C 0.028 3.972 6 C -0.121 4.121 7 Cl -0.013 7.013 8 C -0.026 4.026 9 C 0.596 3.404 10 O -0.550 6.550 11 N -0.689 5.689 12 C 0.144 3.856 13 H 0.073 0.927 14 C -0.117 4.117 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.128 4.128 18 C 0.176 3.824 19 H 0.060 0.940 20 N -0.747 5.747 21 C -0.219 4.219 22 H 0.062 0.938 23 C -0.057 4.057 24 N -0.981 5.981 25 Si 0.936 3.064 26 H -0.262 1.262 27 H -0.303 1.303 28 H -0.264 1.264 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.228 0.772 35 H 0.410 0.590 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.360 0.640 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.338 17.903 -0.586 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.049 5.049 4 N -0.111 5.111 5 C -0.149 4.149 6 C -0.160 4.160 7 Cl 0.015 6.985 8 C -0.157 4.157 9 C 0.378 3.622 10 O -0.427 6.427 11 N -0.338 5.338 12 C 0.040 3.960 13 H 0.092 0.908 14 C -0.156 4.156 15 C -0.147 4.147 16 C -0.150 4.150 17 C -0.169 4.169 18 C 0.068 3.932 19 H 0.078 0.922 20 N -0.389 5.389 21 C -0.350 4.350 22 H 0.080 0.920 23 C -0.248 4.248 24 N -0.632 5.632 25 Si 0.764 3.236 26 H -0.188 1.188 27 H -0.230 1.230 28 H -0.189 1.189 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.244 0.756 35 H 0.246 0.754 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.193 0.807 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.161 17.207 -0.952 18.302 hybrid contribution -0.263 -0.404 0.073 0.487 sum -6.425 16.803 -0.880 18.011 Atomic orbital electron populations 1.22137 0.91745 1.04898 1.03276 1.22350 0.97592 0.75439 1.06129 1.45895 1.44855 1.12605 1.01517 1.73232 1.19589 1.04764 1.13535 1.24067 1.02450 0.95802 0.92593 1.21379 1.11249 0.90023 0.93323 1.98346 1.87727 1.41906 1.70515 1.21295 1.10287 0.94353 0.89759 1.16923 0.83142 0.77786 0.84310 1.90820 1.33080 1.57022 1.61798 1.45985 1.19668 1.56244 1.11927 1.21390 1.00341 0.95144 0.79141 0.90848 1.21837 1.02019 0.96140 0.95643 1.21475 1.00108 0.98556 0.94574 1.21523 0.99403 0.94098 0.99954 1.22051 1.00921 0.98434 0.95458 1.20631 0.96190 0.85059 0.91327 0.92226 1.42764 1.07222 1.24495 1.64438 1.18960 0.91609 0.99223 1.25159 0.91971 1.25335 1.01006 0.97051 1.01437 1.69868 1.35521 1.13564 1.44218 0.85703 0.81935 0.76670 0.79309 1.18775 1.23004 1.18899 0.90324 0.88109 0.92824 0.85935 0.89302 0.75568 0.75366 0.91938 0.90429 0.92093 0.89525 0.91388 0.90736 0.93348 0.92897 0.80705 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 10.24 71.98 0.74 -2.81 16 2 C 0.10 2.63 6.91 86.38 0.60 3.23 16 3 N -0.26 -7.12 3.35 -334.58 -1.12 -8.24 16 4 N -0.28 -7.25 11.89 -57.07 -0.68 -7.93 16 5 C 0.03 0.63 12.04 85.22 1.03 1.65 16 6 C -0.12 -3.07 6.89 22.72 0.16 -2.92 16 7 Cl -0.01 -0.30 29.24 -2.72 -0.08 -0.38 16 8 C -0.03 -0.75 6.72 40.76 0.27 -0.48 16 9 C 0.60 18.60 6.88 86.55 0.60 19.19 16 10 O -0.55 -20.13 16.74 -4.16 -0.07 -20.20 16 11 N -0.69 -20.15 4.90 -446.17 -2.19 -22.34 16 12 C 0.14 4.20 2.02 44.99 0.09 4.29 16 13 H 0.07 2.40 7.51 -2.39 -0.02 2.38 16 14 C -0.12 -2.76 5.49 30.60 0.17 -2.59 16 15 C -0.11 -2.23 5.92 30.59 0.18 -2.04 16 16 C -0.11 -2.50 5.92 30.60 0.18 -2.32 16 17 C -0.13 -3.92 5.50 30.58 0.17 -3.75 16 18 C 0.18 5.87 2.29 44.98 0.10 5.97 16 19 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 20 N -0.75 -31.38 4.76 -323.02 -1.54 -32.92 16 21 C -0.22 -11.39 10.41 84.03 0.87 -10.51 16 22 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 23 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 24 N -0.98 -59.99 13.97 21.65 0.30 -59.68 16 25 Si 0.94 42.53 27.73 68.60 1.90 44.43 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 28 H -0.26 -11.26 6.52 99.48 0.65 -10.62 16 29 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 32 H 0.12 2.74 8.14 -2.39 -0.02 2.73 16 33 H 0.09 2.51 7.65 -2.39 -0.02 2.49 16 34 H 0.23 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.41 11.78 8.59 -92.71 -0.80 10.99 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.36 15.23 5.66 -92.71 -0.52 14.71 16 45 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -66.26 385.66 1.79 -64.48 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.37 Total: 38.54 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.62 Total: 4.24 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -5.22 Total: -131.11 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.07 Total: -20.20 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.90 Total: 44.43 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -66.26 1.79 -64.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085209993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.698 kcal (2) G-P(sol) polarization free energy of solvation -66.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds