Wall clock time and date at job start Sat Apr 11 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34946 * 126.02471 * 2 1 4 4 C 1.35314 * 107.76639 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.05029 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46617 * 99.99987 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73030 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 5 10 10 H 1.08990 * 109.47400 * 34.99963 * 9 8 6 11 11 C 1.52998 * 109.46843 * 274.99901 * 9 8 6 12 12 C 1.53000 * 109.47154 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47252 * 59.99728 * 12 11 9 14 14 C 1.53002 * 109.47269 * 300.00581 * 13 12 11 15 15 C 1.52997 * 109.46833 * 155.00334 * 9 8 6 16 16 H 1.08995 * 109.47843 * 59.99844 * 15 9 8 17 17 N 1.46507 * 109.47134 * 299.99453 * 15 9 8 18 18 C 1.36936 * 120.00111 * 155.00398 * 17 15 9 19 19 H 1.08004 * 119.99594 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00042 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99984 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00186 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46707 * 59.99928 * 22 20 18 24 24 H 1.48496 * 109.47000 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46863 * 300.00533 * 22 20 18 26 26 C 1.39975 * 107.90681 * 0.24056 * 4 3 2 27 27 Cl 1.73592 * 125.91482 * 179.75431 * 26 4 3 28 28 N 1.30900 * 108.17071 * 359.59136 * 26 4 3 29 29 H 1.08999 * 109.46931 * 90.00426 * 1 2 3 30 30 H 1.08997 * 109.47425 * 210.00577 * 1 2 3 31 31 H 1.09005 * 109.46982 * 330.00422 * 1 2 3 32 32 H 1.07995 * 126.12010 * 0.04571 * 3 2 1 33 33 H 1.09001 * 109.46798 * 340.00878 * 5 4 3 34 34 H 1.08993 * 109.47546 * 220.00431 * 5 4 3 35 35 H 0.97005 * 119.99846 * 359.72750 * 8 6 5 36 36 H 1.09007 * 109.47248 * 300.00110 * 11 9 8 37 37 H 1.08997 * 109.47450 * 60.00399 * 11 9 8 38 38 H 1.09002 * 109.47099 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.47232 * 300.00298 * 12 11 9 40 40 H 1.09007 * 109.46950 * 60.00340 * 13 12 11 41 41 H 1.08998 * 109.47209 * 179.97438 * 13 12 11 42 42 H 1.09005 * 109.47082 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.46559 * 299.99420 * 14 13 12 44 44 H 0.97001 * 119.99361 * 335.00434 * 17 15 9 45 45 H 0.96998 * 120.00066 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2586 1.0914 0.0000 4 6 3.5436 0.6675 -0.0006 5 6 4.7676 1.5467 -0.0013 6 6 5.3201 1.6395 1.3976 7 8 4.7710 1.0538 2.3067 8 7 6.4211 2.3783 1.6397 9 6 6.9548 2.4734 3.0006 10 1 6.8089 1.5238 3.5153 11 6 6.2228 3.5823 3.7591 12 6 6.7806 3.6821 5.1803 13 6 8.2747 4.0058 5.1203 14 6 9.0067 2.8969 4.3617 15 6 8.4490 2.7969 2.9410 16 1 8.5950 3.7466 2.4264 17 7 9.1500 1.7351 2.2147 18 6 10.3384 2.0027 1.5892 19 1 10.7591 2.9965 1.6317 20 6 11.0022 0.9968 0.9006 21 7 10.4897 -0.2145 0.8493 22 14 12.6230 1.3620 0.0467 23 1 13.6161 1.8270 1.0480 24 1 13.1240 0.1293 -0.6125 25 1 12.4170 2.4202 -0.9744 26 6 3.5350 -0.7323 -0.0065 27 17 4.9346 -1.7591 -0.0156 28 7 2.2888 -1.1329 -0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.9275 2.1193 0.0007 33 1 4.4990 2.5429 -0.3527 34 1 5.5216 1.1193 -0.6622 35 1 6.8601 2.8471 0.9126 36 1 6.3687 4.5321 3.2444 37 1 5.1583 3.3519 3.8016 38 1 6.2593 4.4724 5.7206 39 1 6.6350 2.7324 5.6953 40 1 8.4203 4.9555 4.6054 41 1 8.6720 4.0773 6.1328 42 1 10.0713 3.1273 4.3193 43 1 8.8612 1.9473 4.8767 44 1 8.7722 0.8424 2.1769 45 1 10.9534 -0.9173 0.3678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085331571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:37 Heat of formation + Delta-G solvation = 34.536591 kcal Electronic energy + Delta-G solvation = -27730.035458 eV Core-core repulsion = 23809.906545 eV Total energy + Delta-G solvation = -3920.128913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.38505 -39.50816 -37.70743 -36.54006 -33.99366 -33.64522 -33.51997 -31.89095 -31.09982 -29.47783 -28.35074 -27.47462 -25.69630 -23.67861 -22.26556 -21.32667 -21.05284 -20.67884 -19.90117 -19.29251 -17.31528 -16.96350 -16.57994 -15.84662 -15.60027 -15.09229 -14.87924 -14.80938 -14.07206 -13.96059 -13.63028 -13.58016 -13.51661 -13.35654 -13.01480 -12.91716 -12.62972 -12.52939 -12.17906 -12.02375 -11.69797 -11.54474 -11.35580 -11.04700 -10.88598 -10.78100 -10.71208 -10.51215 -10.43667 -10.29743 -10.16274 -9.70514 -9.59306 -9.43481 -9.24526 -8.88360 -8.47289 -8.42877 -6.94712 -5.74188 -3.03897 1.58352 1.67984 2.48514 2.84728 3.14541 3.43508 3.48603 3.49958 3.77421 4.35689 4.58342 4.61957 4.86147 5.00138 5.09935 5.11409 5.14080 5.18121 5.25273 5.45236 5.52511 5.56432 5.59475 5.63408 5.76168 5.87817 5.94093 5.95275 6.01053 6.02440 6.14946 6.17170 6.37041 6.49226 6.53389 6.58008 6.63045 6.78225 6.91058 6.99013 7.16586 7.39636 7.69815 8.06948 8.42772 8.76269 9.54476 10.11626 10.47011 11.47419 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.003685 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.678964 B = 7596.590517 C = 9674.232544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.368 5.368 3 C 0.072 3.928 4 C -0.195 4.195 5 C -0.067 4.067 6 C 0.516 3.484 7 O -0.541 6.541 8 N -0.710 5.710 9 C 0.142 3.858 10 H 0.082 0.918 11 C -0.122 4.122 12 C -0.114 4.114 13 C -0.119 4.119 14 C -0.134 4.134 15 C 0.174 3.826 16 H 0.049 0.951 17 N -0.721 5.721 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.009 4.009 21 N -0.928 5.928 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.141 3.859 27 Cl 0.018 6.982 28 N -0.286 5.286 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.180 0.820 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.402 0.598 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.385 0.615 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.883 7.456 -0.807 20.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.152 5.152 3 C -0.074 4.074 4 C -0.208 4.208 5 C -0.108 4.108 6 C 0.302 3.698 7 O -0.418 6.418 8 N -0.360 5.360 9 C 0.037 3.963 10 H 0.100 0.900 11 C -0.161 4.161 12 C -0.152 4.152 13 C -0.157 4.157 14 C -0.175 4.175 15 C 0.063 3.937 16 H 0.067 0.933 17 N -0.362 5.362 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.206 4.206 21 N -0.575 5.575 22 Si 0.735 3.265 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.050 4.050 27 Cl 0.046 6.954 28 N -0.112 5.112 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.197 0.803 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.236 0.764 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -19.938 5.977 -0.258 20.816 hybrid contribution 1.734 0.619 -0.789 2.004 sum -18.203 6.596 -1.047 19.390 Atomic orbital electron populations 1.21885 0.73543 1.04746 1.03418 1.48129 1.06428 1.03184 1.57417 1.22228 0.89877 0.93589 1.01725 1.19246 0.94242 0.91657 1.15619 1.19951 0.95006 0.99881 0.95950 1.20419 0.80508 0.78417 0.90499 1.90670 1.59609 1.45308 1.46246 1.45887 1.28348 1.50802 1.10913 1.21236 0.93820 0.99119 0.82139 0.89967 1.21859 0.99730 0.98802 0.95758 1.21472 0.96083 1.01305 0.96339 1.21577 0.94953 0.99319 0.99859 1.22221 1.00143 0.97616 0.97483 1.20438 0.88192 0.93251 0.91800 0.93283 1.42407 1.23849 1.08831 1.61072 1.19138 0.97479 0.95414 1.25181 0.91350 1.24720 0.98882 0.95692 1.01309 1.69662 1.39781 1.01217 1.46861 0.86333 0.84036 0.76744 0.79404 1.21412 1.21805 1.21343 1.22610 0.89341 0.91060 1.02026 1.98443 1.33234 1.67009 1.96703 1.77341 1.00039 1.07987 1.25805 0.90597 0.89142 0.89208 0.80291 0.88307 0.87637 0.76371 0.92160 0.92079 0.92540 0.92039 0.92438 0.92791 0.91686 0.92519 0.78070 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.66 11.47 59.84 0.69 1.34 16 2 N -0.37 -4.27 4.01 -68.17 -0.27 -4.54 16 3 C 0.07 0.79 11.40 -17.22 -0.20 0.59 16 4 C -0.20 -2.72 4.60 -105.01 -0.48 -3.21 16 5 C -0.07 -0.87 6.04 -29.04 -0.18 -1.04 16 6 C 0.52 8.42 7.79 -10.98 -0.09 8.34 16 7 O -0.54 -10.72 15.70 5.56 0.09 -10.63 16 8 N -0.71 -11.29 4.91 -53.81 -0.26 -11.56 16 9 C 0.14 2.41 1.98 -67.93 -0.13 2.27 16 10 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 11 C -0.12 -1.72 5.49 -26.73 -0.15 -1.87 16 12 C -0.11 -1.50 5.92 -26.73 -0.16 -1.65 16 13 C -0.12 -1.64 5.92 -26.73 -0.16 -1.79 16 14 C -0.13 -2.33 5.50 -26.75 -0.15 -2.48 16 15 C 0.17 3.25 2.29 -67.95 -0.16 3.10 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 N -0.72 -17.16 4.95 -53.45 -0.26 -17.42 16 18 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 19 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 22 Si 0.90 21.92 29.55 -169.99 -5.02 16.89 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 C 0.14 2.28 7.84 -17.30 -0.14 2.14 16 27 Cl 0.02 0.31 29.16 -51.86 -1.51 -1.20 16 28 N -0.29 -4.43 12.58 32.94 0.41 -4.01 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.40 5.96 8.60 -40.82 -0.35 5.61 16 36 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.39 10.20 7.80 -40.82 -0.32 9.88 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 389.00 15.07 5.86 5.86 Total: -1.00 -34.18 389.00 -8.73 -42.91 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -6.95 Total: 11.61 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.54 Total: -1.13 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: 0.34 Total: -64.32 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.51 Total: -1.20 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.18 -8.73 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085331571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.448 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds