Wall clock time and date at job start Sat Apr 11 2020 06:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34946 * 126.02471 * 2 1 4 4 C 1.35314 * 107.76639 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.05029 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.46617 * 99.99987 * 5 4 3 7 7 O 1.21283 * 120.00521 * 359.73030 * 6 5 4 8 8 N 1.34784 * 119.99774 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99893 * 179.72962 * 8 6 5 10 10 H 1.08990 * 109.47400 * 34.99963 * 9 8 6 11 11 C 1.52998 * 109.46843 * 274.99901 * 9 8 6 12 12 C 1.53000 * 109.47154 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47252 * 59.99728 * 12 11 9 14 14 C 1.53002 * 109.47269 * 300.00581 * 13 12 11 15 15 C 1.52997 * 109.46833 * 155.00334 * 9 8 6 16 16 H 1.08995 * 109.47843 * 59.99844 * 15 9 8 17 17 N 1.46507 * 109.47134 * 299.99453 * 15 9 8 18 18 C 1.36936 * 120.00111 * 155.00398 * 17 15 9 19 19 H 1.08004 * 119.99594 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00042 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99984 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00186 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46707 * 59.99928 * 22 20 18 24 24 H 1.48496 * 109.47000 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46863 * 300.00533 * 22 20 18 26 26 C 1.39975 * 107.90681 * 0.24056 * 4 3 2 27 27 Cl 1.73592 * 125.91482 * 179.75431 * 26 4 3 28 28 N 1.30900 * 108.17071 * 359.59136 * 26 4 3 29 29 H 1.08999 * 109.46931 * 90.00426 * 1 2 3 30 30 H 1.08997 * 109.47425 * 210.00577 * 1 2 3 31 31 H 1.09005 * 109.46982 * 330.00422 * 1 2 3 32 32 H 1.07995 * 126.12010 * 0.04571 * 3 2 1 33 33 H 1.09001 * 109.46798 * 340.00878 * 5 4 3 34 34 H 1.08993 * 109.47546 * 220.00431 * 5 4 3 35 35 H 0.97005 * 119.99846 * 359.72750 * 8 6 5 36 36 H 1.09007 * 109.47248 * 300.00110 * 11 9 8 37 37 H 1.08997 * 109.47450 * 60.00399 * 11 9 8 38 38 H 1.09002 * 109.47099 * 179.97438 * 12 11 9 39 39 H 1.09002 * 109.47232 * 300.00298 * 12 11 9 40 40 H 1.09007 * 109.46950 * 60.00340 * 13 12 11 41 41 H 1.08998 * 109.47209 * 179.97438 * 13 12 11 42 42 H 1.09005 * 109.47082 * 180.02562 * 14 13 12 43 43 H 1.08997 * 109.46559 * 299.99420 * 14 13 12 44 44 H 0.97001 * 119.99361 * 335.00434 * 17 15 9 45 45 H 0.96998 * 120.00066 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2586 1.0914 0.0000 4 6 3.5436 0.6675 -0.0006 5 6 4.7676 1.5467 -0.0013 6 6 5.3201 1.6395 1.3976 7 8 4.7710 1.0538 2.3067 8 7 6.4211 2.3783 1.6397 9 6 6.9548 2.4734 3.0006 10 1 6.8089 1.5238 3.5153 11 6 6.2228 3.5823 3.7591 12 6 6.7806 3.6821 5.1803 13 6 8.2747 4.0058 5.1203 14 6 9.0067 2.8969 4.3617 15 6 8.4490 2.7969 2.9410 16 1 8.5950 3.7466 2.4264 17 7 9.1500 1.7351 2.2147 18 6 10.3384 2.0027 1.5892 19 1 10.7591 2.9965 1.6317 20 6 11.0022 0.9968 0.9006 21 7 10.4897 -0.2145 0.8493 22 14 12.6230 1.3620 0.0467 23 1 13.6161 1.8270 1.0480 24 1 13.1240 0.1293 -0.6125 25 1 12.4170 2.4202 -0.9744 26 6 3.5350 -0.7323 -0.0065 27 17 4.9346 -1.7591 -0.0156 28 7 2.2888 -1.1329 -0.0006 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 1.9275 2.1193 0.0007 33 1 4.4990 2.5429 -0.3527 34 1 5.5216 1.1193 -0.6622 35 1 6.8601 2.8471 0.9126 36 1 6.3687 4.5321 3.2444 37 1 5.1583 3.3519 3.8016 38 1 6.2593 4.4724 5.7206 39 1 6.6350 2.7324 5.6953 40 1 8.4203 4.9555 4.6054 41 1 8.6720 4.0773 6.1328 42 1 10.0713 3.1273 4.3193 43 1 8.8612 1.9473 4.8767 44 1 8.7722 0.8424 2.1769 45 1 10.9534 -0.9173 0.3678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085331571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:36 Heat of formation + Delta-G solvation = 10.922702 kcal Electronic energy + Delta-G solvation = -27731.059433 eV Core-core repulsion = 23809.906545 eV Total energy + Delta-G solvation = -3921.152888 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34923 -40.83104 -39.06070 -37.74394 -35.76692 -34.93491 -34.46707 -32.97612 -32.86235 -30.69688 -29.60443 -28.73180 -26.62717 -25.56550 -23.52075 -22.48021 -22.25115 -21.78332 -21.17004 -20.56698 -19.11282 -18.09925 -17.78359 -17.19039 -16.62551 -16.43094 -16.14971 -15.95761 -15.62280 -15.36731 -14.98883 -14.67162 -14.58697 -14.53142 -14.29404 -14.02474 -13.90565 -13.60522 -13.48066 -13.21867 -12.88792 -12.80892 -12.72621 -12.57530 -12.48543 -12.23663 -12.10908 -12.02742 -11.95054 -11.59767 -11.53100 -11.39680 -11.05450 -10.92756 -10.65256 -10.27591 -9.78573 -9.43283 -8.94311 -7.86368 -5.15199 0.55331 0.74479 1.42205 1.50332 1.52411 1.58438 1.88643 2.00325 2.55128 2.60577 3.46682 3.56732 3.75255 3.87777 3.90070 4.07143 4.16852 4.28379 4.32611 4.39531 4.39663 4.46601 4.49080 4.58765 4.60313 4.65140 4.71108 4.72767 4.75332 4.98933 5.00027 5.07573 5.15360 5.25681 5.28131 5.33399 5.35643 5.51582 5.57214 5.63803 5.80070 6.02531 6.32534 6.40712 6.80761 7.39465 7.50308 8.14519 8.38531 9.36161 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.003685 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.678964 B = 7596.590517 C = 9674.232544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.361 5.361 3 C 0.094 3.906 4 C -0.226 4.226 5 C -0.057 4.057 6 C 0.513 3.487 7 O -0.580 6.580 8 N -0.708 5.708 9 C 0.150 3.850 10 H 0.044 0.956 11 C -0.111 4.111 12 C -0.111 4.111 13 C -0.109 4.109 14 C -0.130 4.130 15 C 0.173 3.827 16 H 0.061 0.939 17 N -0.731 5.731 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.074 4.074 21 N -0.968 5.968 22 Si 0.967 3.033 23 H -0.282 1.282 24 H -0.304 1.304 25 H -0.274 1.274 26 C 0.116 3.884 27 Cl -0.011 7.011 28 N -0.324 5.324 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.231 0.769 33 H 0.144 0.856 34 H 0.096 0.904 35 H 0.408 0.592 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.048 0.952 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.035 0.965 44 H 0.368 0.632 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.634 11.343 -0.866 23.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.144 5.144 3 C -0.053 4.053 4 C -0.238 4.238 5 C -0.098 4.098 6 C 0.300 3.700 7 O -0.460 6.460 8 N -0.357 5.357 9 C 0.044 3.956 10 H 0.062 0.938 11 C -0.150 4.150 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.171 4.171 15 C 0.064 3.936 16 H 0.078 0.922 17 N -0.370 5.370 18 C -0.362 4.362 19 H 0.097 0.903 20 C -0.266 4.266 21 N -0.619 5.619 22 Si 0.797 3.203 23 H -0.209 1.209 24 H -0.231 1.231 25 H -0.200 1.200 26 C -0.074 4.074 27 Cl 0.017 6.983 28 N -0.151 5.151 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.143 0.857 32 H 0.247 0.753 33 H 0.162 0.838 34 H 0.114 0.886 35 H 0.244 0.756 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.199 0.801 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -21.703 9.921 -0.305 23.865 hybrid contribution 2.125 -0.543 -0.710 2.305 sum -19.578 9.379 -1.014 21.733 Atomic orbital electron populations 1.22368 0.70518 1.06390 1.05337 1.48618 1.08000 1.02371 1.55449 1.22957 0.88592 0.95303 0.98487 1.19496 0.95900 0.90723 1.17665 1.19945 0.94504 1.02167 0.93183 1.21050 0.80040 0.77288 0.91578 1.90648 1.60820 1.46698 1.47840 1.45897 1.28293 1.50842 1.10714 1.21056 0.93014 0.98548 0.82945 0.93803 1.21774 0.98947 0.98208 0.96090 1.21482 0.95820 1.01797 0.95846 1.21508 0.94791 0.98109 1.00282 1.22102 0.99644 0.98397 0.96914 1.20654 0.88976 0.91981 0.91952 0.92155 1.42589 1.23622 1.09190 1.61604 1.19532 0.97738 0.95462 1.23423 0.90283 1.25468 1.02279 0.95686 1.03140 1.69845 1.41275 1.02162 1.48633 0.85311 0.80344 0.76165 0.78509 1.20898 1.23087 1.19969 1.22772 0.88976 0.91856 1.03800 1.98416 1.34937 1.68034 1.96936 1.77229 1.00334 1.10440 1.27116 0.88503 0.89424 0.85677 0.75284 0.83795 0.88572 0.75636 0.89971 0.92395 0.89445 0.93365 0.90716 0.91157 0.93313 0.94578 0.80130 0.94508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.47 127.77 1.47 2.33 16 2 N -0.36 -7.60 4.01 -369.59 -1.48 -9.09 16 3 C 0.09 1.78 11.40 83.54 0.95 2.73 16 4 C -0.23 -6.05 4.60 -20.12 -0.09 -6.14 16 5 C -0.06 -1.42 6.04 29.10 0.18 -1.24 16 6 C 0.51 16.65 7.79 87.65 0.68 17.34 16 7 O -0.58 -23.39 15.70 -3.04 -0.05 -23.44 16 8 N -0.71 -22.23 4.91 -442.54 -2.17 -24.40 16 9 C 0.15 5.06 1.98 44.99 0.09 5.15 16 10 H 0.04 1.83 7.58 -2.39 -0.02 1.81 16 11 C -0.11 -2.88 5.49 30.59 0.17 -2.71 16 12 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 13 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 14 C -0.13 -4.47 5.50 30.58 0.17 -4.31 16 15 C 0.17 6.41 2.29 44.97 0.10 6.52 16 16 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 17 N -0.73 -35.54 4.95 -323.01 -1.60 -37.14 16 18 C -0.23 -12.17 9.93 84.03 0.83 -11.33 16 19 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 21 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 22 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.12 3.83 7.84 85.25 0.67 4.50 16 27 Cl -0.01 -0.40 29.16 -2.72 -0.08 -0.48 16 28 N -0.32 -10.08 12.58 -49.68 -0.62 -10.70 16 29 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.23 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.41 11.70 8.60 -92.70 -0.80 10.91 16 36 H 0.08 1.80 8.14 -2.38 -0.02 1.79 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 44 H 0.37 20.37 7.80 -92.71 -0.72 19.65 16 45 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -79.14 389.00 1.84 -77.30 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: -0.51 Total: 35.38 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.04 Total: 4.18 kcal Atomic # 7 Polarization: -134.97 SS G_CDS: -5.60 Total: -140.56 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -79.14 1.84 -77.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085331571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.227 kcal (2) G-P(sol) polarization free energy of solvation -79.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds