Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47447 * 2 1 4 4 N 1.46506 * 109.47270 * 119.99961 * 2 1 3 5 5 N 1.39930 * 125.74813 * 300.02831 * 4 2 1 6 6 C 1.30406 * 108.95854 * 179.97438 * 5 4 2 7 7 C 1.41341 * 108.04909 * 359.97438 * 6 5 4 8 8 C 1.47305 * 126.43271 * 180.02562 * 7 6 5 9 9 O 1.21622 * 119.99346 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00411 * 359.97438 * 8 7 6 11 11 C 1.46495 * 120.00137 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47108 * 180.02562 * 11 10 8 13 13 H 1.08998 * 112.85355 * 45.33013 * 12 11 10 14 14 C 1.53778 * 113.61408 * 176.53120 * 12 11 10 15 15 C 1.53786 * 87.08131 * 139.97762 * 14 12 11 16 16 H 1.09000 * 113.60935 * 89.11738 * 15 14 12 17 17 N 1.46503 * 113.61513 * 219.93032 * 15 14 12 18 18 C 1.36933 * 120.00106 * 205.00169 * 17 15 14 19 19 H 1.08000 * 119.99682 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00058 * 180.02562 * 18 17 15 21 21 N 1.31621 * 120.00050 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00233 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47133 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47365 * 119.99970 * 22 20 18 25 25 H 1.48505 * 109.47068 * 240.00012 * 22 20 18 26 26 C 1.53786 * 113.61277 * 274.13857 * 12 11 10 27 27 C 1.34349 * 125.74933 * 119.71155 * 4 2 1 28 28 Cl 1.73596 * 126.31870 * 0.05121 * 27 4 2 29 29 H 1.09001 * 109.47185 * 299.99959 * 1 2 3 30 30 H 1.09002 * 109.46875 * 60.00479 * 1 2 3 31 31 H 1.09006 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47429 * 239.99586 * 2 1 3 33 33 H 1.09002 * 109.46958 * 300.00113 * 3 2 1 34 34 H 1.09001 * 109.46895 * 59.99863 * 3 2 1 35 35 H 1.08990 * 109.47552 * 179.97438 * 3 2 1 36 36 H 1.08001 * 125.97715 * 180.02562 * 6 5 4 37 37 H 0.97006 * 119.99424 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.47151 * 300.00125 * 11 10 8 39 39 H 1.08997 * 109.47301 * 59.99904 * 11 10 8 40 40 H 1.08997 * 113.61585 * 254.52627 * 14 12 11 41 41 H 1.08998 * 113.61995 * 25.34878 * 14 12 11 42 42 H 0.97005 * 119.99647 * 25.00319 * 17 15 14 43 43 H 0.96999 * 120.00026 * 179.97438 * 21 20 18 44 44 H 1.09004 * 113.61134 * 334.56406 * 26 12 11 45 45 H 1.08999 * 113.61383 * 105.47035 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7551 -0.3192 2.5194 6 6 2.3486 -1.1591 3.3213 7 6 3.0248 -2.1159 2.5308 8 6 3.8254 -3.2498 3.0240 9 8 4.3593 -4.0059 2.2350 10 7 3.9663 -3.4493 4.3494 11 6 4.7621 -4.5773 4.8398 12 6 4.7603 -4.5757 6.3698 13 1 3.7690 -4.4101 6.7918 14 6 5.5008 -5.7733 6.9880 15 6 6.0539 -4.7909 8.0339 16 1 5.4169 -4.6835 8.9118 17 7 7.4587 -5.0274 8.3759 18 6 7.9450 -4.6235 9.5907 19 1 7.2929 -4.1303 10.2964 20 6 9.2761 -4.8471 9.9145 21 7 10.0710 -5.4469 9.0539 22 14 9.9393 -4.2969 11.5719 23 1 8.8518 -3.6520 12.3509 24 1 10.4504 -5.4755 12.3166 25 1 11.0430 -3.3250 11.3655 26 6 5.8492 -3.6816 6.9862 27 6 2.7896 -1.7907 1.2076 28 17 3.3842 -2.6439 -0.1824 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 2.3265 -1.1293 4.4006 37 1 3.5407 -2.8460 4.9786 38 1 4.3313 -5.5106 4.4774 39 1 5.7858 -4.4847 4.4772 40 1 4.8361 -6.5287 7.4070 41 1 6.2658 -6.1968 6.3373 42 1 8.0444 -5.4701 7.7419 43 1 11.0013 -5.6028 9.2801 44 1 6.7107 -3.5314 6.3354 45 1 5.4653 -2.7509 7.4037 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086159455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = 59.046889 kcal Electronic energy + Delta-G solvation = -26210.655782 eV Core-core repulsion = 22291.589715 eV Total energy + Delta-G solvation = -3919.066067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.87457 -39.44909 -38.28119 -37.25177 -36.20326 -34.59259 -33.25273 -31.19475 -30.68734 -30.00817 -27.90253 -27.26323 -25.05374 -24.10852 -23.53181 -22.92925 -21.03577 -20.76194 -20.13400 -19.01763 -18.21335 -17.04990 -16.75353 -16.10348 -15.99983 -15.25664 -15.19114 -14.95708 -14.70853 -14.53790 -13.93238 -13.85264 -13.63864 -13.45610 -13.14062 -12.94485 -12.86367 -12.79848 -12.39469 -12.36582 -11.99205 -11.85764 -11.77216 -11.58825 -11.35606 -11.20722 -11.14015 -10.83792 -10.49128 -10.20092 -10.09158 -9.89829 -9.82052 -9.79426 -9.45923 -9.16598 -8.87103 -8.81880 -6.94003 -5.76657 -3.05300 0.93876 0.96268 1.77831 2.02905 3.22521 3.33097 3.43611 3.49089 3.51510 3.78690 4.23891 4.26189 4.39907 4.59869 4.61289 4.71126 4.94848 4.96788 5.01815 5.04020 5.12535 5.15949 5.20722 5.30541 5.49155 5.51692 5.55078 5.56194 5.85962 5.87743 5.92692 5.99993 6.12110 6.12371 6.31550 6.35918 6.40535 6.52450 6.63439 6.86826 6.97795 7.15077 7.56279 7.71188 8.28617 8.41984 9.53038 10.11896 10.45921 11.45789 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021815 B = 0.001861 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.185330 B =15043.646815 C =15445.752465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 C -0.161 4.161 4 N -0.347 5.347 5 N -0.270 5.270 6 C 0.088 3.912 7 C -0.268 4.268 8 C 0.587 3.413 9 O -0.536 6.536 10 N -0.719 5.719 11 C 0.135 3.865 12 C -0.127 4.127 13 H 0.088 0.912 14 C -0.142 4.142 15 C 0.165 3.835 16 H 0.075 0.925 17 N -0.713 5.713 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.161 4.161 27 C 0.181 3.819 28 Cl 0.028 6.972 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.199 0.801 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.078 0.922 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.306 11.631 -20.568 32.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.219 4.219 4 N -0.130 5.130 5 N -0.090 5.090 6 C -0.099 4.099 7 C -0.284 4.284 8 C 0.374 3.626 9 O -0.414 6.414 10 N -0.370 5.370 11 C 0.012 3.988 12 C -0.146 4.146 13 H 0.106 0.894 14 C -0.182 4.182 15 C 0.053 3.947 16 H 0.093 0.907 17 N -0.351 5.351 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.210 4.210 21 N -0.580 5.580 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.202 4.202 27 C 0.023 3.977 28 Cl 0.056 6.944 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.215 0.785 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.575 12.165 -21.259 33.310 hybrid contribution 0.990 -0.285 0.845 1.333 sum -21.584 11.880 -20.414 31.996 Atomic orbital electron populations 1.22142 0.92350 1.03389 1.03974 1.21602 0.96350 0.94481 0.83114 1.22139 1.02134 0.93647 1.03971 1.48945 1.37551 1.19644 1.06834 1.77262 1.23614 1.22848 0.85292 1.24054 0.94138 0.91334 1.00385 1.19964 1.13525 1.04502 0.90433 1.17047 0.79832 0.83210 0.82543 1.90822 1.48442 1.46752 1.55361 1.45757 1.53552 1.31540 1.06150 1.21421 0.95617 0.88143 0.93588 1.22637 0.99090 1.00336 0.92553 0.89372 1.23437 0.99203 0.96269 0.99271 1.21558 0.87491 0.92332 0.93296 0.90727 1.42423 1.04959 1.69740 1.17950 1.19351 0.93627 1.31261 0.93141 0.91045 1.24774 0.96521 1.01411 0.98339 1.69672 1.05574 1.47625 1.35117 0.86120 0.78724 0.77769 0.83586 1.20547 1.21878 1.21896 1.23970 0.97120 0.98551 1.00562 1.22098 0.95166 0.89415 0.91063 1.98457 1.85118 1.73232 1.37610 0.90650 0.90118 0.91801 0.87644 0.90108 0.90644 0.91729 0.78455 0.76808 0.91701 0.91135 0.92030 0.90102 0.78062 0.93524 0.90341 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 9.45 37.16 0.35 -0.41 16 2 C 0.15 0.87 3.66 -67.93 -0.25 0.62 16 3 C -0.16 -0.81 9.45 37.16 0.35 -0.46 16 4 N -0.35 -3.15 3.25 -51.12 -0.17 -3.32 16 5 N -0.27 -2.61 12.33 30.87 0.38 -2.23 16 6 C 0.09 0.79 11.50 -16.98 -0.20 0.60 16 7 C -0.27 -3.03 6.13 -105.02 -0.64 -3.67 16 8 C 0.59 7.83 7.81 -12.57 -0.10 7.73 16 9 O -0.54 -8.95 15.65 5.26 0.08 -8.87 16 10 N -0.72 -8.20 5.55 -61.43 -0.34 -8.54 16 11 C 0.14 1.76 5.50 -4.04 -0.02 1.74 16 12 C -0.13 -1.65 3.75 -89.81 -0.34 -1.99 16 13 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.14 -2.23 7.40 -25.92 -0.19 -2.43 16 15 C 0.17 3.16 4.48 -67.02 -0.30 2.86 16 16 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 17 N -0.71 -17.74 5.41 -52.55 -0.28 -18.03 16 18 C -0.24 -6.70 9.97 -15.06 -0.15 -6.85 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C -0.16 -2.61 7.45 -25.83 -0.19 -2.80 16 27 C 0.18 1.96 7.53 -16.44 -0.12 1.84 16 28 Cl 0.03 0.29 27.00 -51.86 -1.40 -1.11 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.11 0.53 7.23 -51.93 -0.38 0.15 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.20 1.08 7.50 -52.49 -0.39 0.68 16 37 H 0.40 3.42 7.43 -40.82 -0.30 3.11 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.06 7.88 -51.93 -0.41 0.65 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 42 H 0.39 10.25 7.93 -40.82 -0.32 9.92 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 392.28 15.07 5.91 5.91 Total: -1.00 -33.76 392.28 -8.84 -42.61 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.83 Total: 7.50 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -1.90 Total: -3.74 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.31 Total: -59.63 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.40 Total: -1.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.76 -8.84 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086159455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.652 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds