Wall clock time and date at job start Sat Apr 11 2020 06:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47465 * 2 1 4 4 N 1.39926 * 125.74552 * 269.98091 * 3 2 1 5 5 C 1.30418 * 108.95809 * 179.75545 * 4 3 2 6 6 C 1.50692 * 125.97927 * 180.24305 * 5 4 3 7 7 C 1.41348 * 108.04420 * 0.40284 * 5 4 3 8 8 C 1.47299 * 126.42865 * 179.85572 * 7 5 4 9 9 O 1.21619 * 119.99761 * 269.70716 * 8 7 5 10 10 N 1.34771 * 119.99716 * 89.72096 * 8 7 5 11 11 C 1.46503 * 119.99784 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47083 * 179.97438 * 11 10 8 13 13 H 1.08996 * 112.85456 * 43.80542 * 12 11 10 14 14 C 1.53790 * 113.61498 * 175.00168 * 12 11 10 15 15 C 1.53782 * 87.08176 * 140.06549 * 14 12 11 16 16 H 1.08997 * 113.61369 * 89.19654 * 15 14 12 17 17 N 1.46498 * 113.61388 * 220.02130 * 15 14 12 18 18 C 1.36943 * 119.99727 * 205.00107 * 17 15 14 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.53785 * 113.69313 * 272.53733 * 12 11 10 27 27 C 1.34343 * 125.75236 * 89.99699 * 3 2 1 28 28 Cl 1.73603 * 126.31891 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.46897 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46629 * 300.00302 * 1 2 3 31 31 H 1.08999 * 109.46830 * 59.99703 * 1 2 3 32 32 H 1.08997 * 109.47350 * 239.99788 * 2 1 3 33 33 H 1.09005 * 109.47382 * 119.99896 * 2 1 3 34 34 H 1.09003 * 109.47058 * 270.19498 * 6 5 4 35 35 H 1.09008 * 109.47336 * 30.18805 * 6 5 4 36 36 H 1.09001 * 109.47748 * 150.19012 * 6 5 4 37 37 H 0.96994 * 120.00804 * 359.97438 * 10 8 7 38 38 H 1.09007 * 109.47209 * 59.99830 * 11 10 8 39 39 H 1.09002 * 109.47191 * 299.99823 * 11 10 8 40 40 H 1.08999 * 113.61219 * 25.51583 * 14 12 11 41 41 H 1.08997 * 113.61512 * 254.61533 * 14 12 11 42 42 H 0.96998 * 120.00095 * 24.99566 * 17 15 14 43 43 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 44 44 H 1.09001 * 113.61484 * 105.46109 * 26 12 11 45 45 H 1.08998 * 113.61333 * 334.55663 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2913 2.1518 -1.1357 5 6 2.7025 3.3307 -0.7590 6 6 3.0961 4.4641 -1.6708 7 6 2.7179 3.3582 0.6541 8 6 3.1190 4.4935 1.5026 9 8 4.2776 4.6110 1.8532 10 7 2.2020 5.4018 1.8906 11 6 2.6009 6.5306 2.7349 12 6 1.3798 7.4048 3.0278 13 1 0.4941 6.8230 3.2830 14 6 1.6659 8.5538 4.0092 15 6 0.7682 9.4312 3.1209 16 1 -0.2844 9.4044 3.4023 17 7 1.2743 10.7940 2.9397 18 6 0.4083 11.8118 2.6404 19 1 -0.6476 11.6097 2.5375 20 6 0.8877 13.1032 2.4693 21 7 2.1746 13.3494 2.5942 22 14 -0.2934 14.4914 2.0603 23 1 0.4630 15.7627 1.9302 24 1 -1.2980 14.6226 3.1460 25 1 -0.9842 14.1926 0.7802 26 6 1.1223 8.4836 1.9626 27 6 2.2801 2.1213 1.0903 28 17 2.1024 1.6173 2.7420 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.1608 4.3973 -1.8947 35 1 2.5254 4.4001 -2.5973 36 1 2.8869 5.4147 -1.1802 37 1 1.2780 5.3082 1.6108 38 1 3.3555 7.1229 2.2172 39 1 3.0130 6.1558 3.6718 40 1 2.7095 8.8682 4.0210 41 1 1.2620 8.3861 5.0076 42 1 2.2227 10.9755 3.0319 43 1 2.7880 12.6285 2.8062 44 1 0.2795 8.2592 1.3088 45 1 2.0173 8.7789 1.4149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086274969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:44 Heat of formation + Delta-G solvation = 57.261565 kcal Electronic energy + Delta-G solvation = -26570.131030 eV Core-core repulsion = 22650.987546 eV Total energy + Delta-G solvation = -3919.143484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.88763 -39.55218 -38.40777 -37.45197 -35.39242 -34.73856 -33.55044 -31.81504 -30.81187 -29.90184 -28.19489 -27.18778 -25.16032 -24.38108 -23.56027 -22.40268 -21.20950 -20.92195 -20.21565 -19.12094 -18.06461 -17.29006 -16.83995 -16.33787 -15.84676 -15.56340 -15.11285 -15.01698 -14.74581 -14.47912 -13.86749 -13.76086 -13.66608 -13.51724 -13.39968 -13.09606 -12.97433 -12.81283 -12.69703 -12.23743 -12.07972 -11.97549 -11.90457 -11.88048 -11.55493 -11.13781 -10.96160 -10.75262 -10.42761 -10.32851 -10.00877 -9.94059 -9.84125 -9.68690 -9.13119 -9.05309 -9.03136 -8.86610 -7.03149 -6.10696 -3.10565 0.85806 1.01514 1.95011 2.00585 2.44659 3.20032 3.51621 3.55100 3.72782 3.86355 4.27812 4.33523 4.55883 4.59570 4.66935 4.74073 4.91986 4.93935 5.00064 5.02374 5.09825 5.17678 5.32813 5.43464 5.44998 5.47345 5.49481 5.54577 5.77937 5.79238 5.87898 5.93576 5.98236 6.14350 6.20996 6.23167 6.28564 6.41251 6.53411 6.74448 7.03764 7.04507 7.44109 7.80635 8.14408 8.75136 9.22305 10.08666 10.23811 11.37455 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002074 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.396032 B =13499.204443 C =13815.921297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.120 3.880 3 N -0.350 5.350 4 N -0.272 5.272 5 C 0.122 3.878 6 C -0.080 4.080 7 C -0.257 4.257 8 C 0.594 3.406 9 O -0.529 6.529 10 N -0.714 5.714 11 C 0.132 3.868 12 C -0.126 4.126 13 H 0.089 0.911 14 C -0.144 4.144 15 C 0.171 3.829 16 H 0.076 0.924 17 N -0.724 5.724 18 C -0.335 4.335 19 H 0.065 0.935 20 C -0.045 4.045 21 N -0.943 5.943 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C -0.160 4.160 27 C 0.158 3.842 28 Cl 0.011 6.989 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.401 0.599 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.368 0.632 43 H 0.255 0.745 44 H 0.055 0.945 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 -30.445 -4.508 30.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.132 5.132 4 N -0.095 5.095 5 C -0.044 4.044 6 C -0.138 4.138 7 C -0.273 4.273 8 C 0.378 3.622 9 O -0.405 6.405 10 N -0.364 5.364 11 C 0.009 3.991 12 C -0.145 4.145 13 H 0.107 0.893 14 C -0.183 4.183 15 C 0.059 3.941 16 H 0.094 0.906 17 N -0.364 5.364 18 C -0.466 4.466 19 H 0.083 0.917 20 C -0.243 4.243 21 N -0.588 5.588 22 Si 0.911 3.089 23 H -0.210 1.210 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.201 4.201 27 C 0.001 3.999 28 Cl 0.039 6.961 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.202 0.798 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.781 -29.629 -5.407 30.246 hybrid contribution 0.017 -1.554 1.113 1.911 sum -2.765 -31.182 -4.294 31.598 Atomic orbital electron populations 1.22195 0.93365 1.03677 1.03664 1.21918 0.95976 0.76832 1.05282 1.48613 1.50054 1.12609 1.01921 1.77290 1.23215 1.03870 1.05110 1.22339 0.96257 0.94214 0.91599 1.20338 1.02764 0.93074 0.97650 1.19829 1.18288 0.94966 0.94198 1.17095 0.85178 0.81004 0.78938 1.90812 1.18472 1.75628 1.55598 1.46033 1.12002 1.26056 1.52332 1.21473 0.97290 0.86221 0.94107 1.22630 0.97038 0.94808 1.00054 0.89297 1.23461 1.01530 0.95628 0.97717 1.21459 0.96174 0.83989 0.92468 0.90598 1.42419 1.06776 1.03018 1.84153 1.20091 0.91162 0.89948 1.45424 0.91724 1.25795 0.99720 0.98138 1.00661 1.70883 1.02034 1.34511 1.51341 0.83246 0.73909 0.76011 0.75774 1.21029 1.22267 1.22255 1.23932 1.01417 0.96786 0.97970 1.21934 1.02213 0.91971 0.83737 1.98442 1.95975 1.90932 1.10711 0.89887 0.91727 0.91154 0.87656 0.88475 0.89483 0.89864 0.89737 0.76470 0.91048 0.91565 0.90243 0.91937 0.79804 0.93346 0.92667 0.90431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.75 10.24 37.16 0.38 -0.37 16 2 C 0.12 0.65 6.97 -4.04 -0.03 0.63 16 3 N -0.35 -3.27 3.58 -57.57 -0.21 -3.47 16 4 N -0.27 -2.99 12.49 33.90 0.42 -2.56 16 5 C 0.12 1.37 7.26 -82.01 -0.60 0.77 16 6 C -0.08 -0.71 10.28 36.00 0.37 -0.34 16 7 C -0.26 -3.08 5.88 -105.02 -0.62 -3.70 16 8 C 0.59 8.09 7.20 -12.58 -0.09 8.00 16 9 O -0.53 -9.21 17.11 5.26 0.09 -9.12 16 10 N -0.71 -8.39 5.55 -61.42 -0.34 -8.73 16 11 C 0.13 1.71 5.51 -4.04 -0.02 1.69 16 12 C -0.13 -1.65 3.75 -89.80 -0.34 -1.99 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.14 -2.25 7.39 -25.91 -0.19 -2.44 16 15 C 0.17 3.30 4.48 -67.12 -0.30 3.00 16 16 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 17 N -0.72 -17.99 5.40 -52.64 -0.28 -18.27 16 18 C -0.34 -9.38 9.97 -15.06 -0.15 -9.53 16 19 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.05 -1.32 5.50 -17.43 -0.10 -1.42 16 21 N -0.94 -29.20 13.70 55.49 0.76 -28.44 16 22 Si 1.08 25.84 29.92 -169.99 -5.09 20.76 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.16 -2.61 7.43 -25.91 -0.19 -2.80 16 27 C 0.16 1.66 7.54 -16.44 -0.12 1.54 16 28 Cl 0.01 0.10 28.56 -51.86 -1.48 -1.38 16 29 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.39 7.77 -51.93 -0.40 -0.01 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 36 H 0.08 0.77 8.01 -51.93 -0.42 0.35 16 37 H 0.40 3.93 8.46 -40.82 -0.35 3.59 16 38 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.30 8.08 -51.93 -0.42 0.88 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.37 9.46 6.76 -40.82 -0.28 9.19 16 43 H 0.26 7.78 6.77 -40.82 -0.28 7.51 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -34.80 395.97 -8.96 -43.76 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.81 Total: 8.46 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -2.00 Total: -6.97 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.35 Total: -61.48 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.09 Total: 20.76 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.48 Total: -1.38 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.80 -8.96 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086274969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.023 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds