Wall clock time and date at job start Sat Apr 11 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.47465 * 2 1 4 4 N 1.39926 * 125.74552 * 269.98091 * 3 2 1 5 5 C 1.30418 * 108.95809 * 179.75545 * 4 3 2 6 6 C 1.50692 * 125.97927 * 180.24305 * 5 4 3 7 7 C 1.41348 * 108.04420 * 0.40284 * 5 4 3 8 8 C 1.47299 * 126.42865 * 179.85572 * 7 5 4 9 9 O 1.21619 * 119.99761 * 269.70716 * 8 7 5 10 10 N 1.34771 * 119.99716 * 89.72096 * 8 7 5 11 11 C 1.46503 * 119.99784 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47083 * 179.97438 * 11 10 8 13 13 H 1.08996 * 112.85456 * 43.80542 * 12 11 10 14 14 C 1.53790 * 113.61498 * 175.00168 * 12 11 10 15 15 C 1.53782 * 87.08176 * 140.06549 * 14 12 11 16 16 H 1.08997 * 113.61369 * 89.19654 * 15 14 12 17 17 N 1.46498 * 113.61388 * 220.02130 * 15 14 12 18 18 C 1.36943 * 119.99727 * 205.00107 * 17 15 14 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.53785 * 113.69313 * 272.53733 * 12 11 10 27 27 C 1.34343 * 125.75236 * 89.99699 * 3 2 1 28 28 Cl 1.73603 * 126.31891 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.46897 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46629 * 300.00302 * 1 2 3 31 31 H 1.08999 * 109.46830 * 59.99703 * 1 2 3 32 32 H 1.08997 * 109.47350 * 239.99788 * 2 1 3 33 33 H 1.09005 * 109.47382 * 119.99896 * 2 1 3 34 34 H 1.09003 * 109.47058 * 270.19498 * 6 5 4 35 35 H 1.09008 * 109.47336 * 30.18805 * 6 5 4 36 36 H 1.09001 * 109.47748 * 150.19012 * 6 5 4 37 37 H 0.96994 * 120.00804 * 359.97438 * 10 8 7 38 38 H 1.09007 * 109.47209 * 59.99830 * 11 10 8 39 39 H 1.09002 * 109.47191 * 299.99823 * 11 10 8 40 40 H 1.08999 * 113.61219 * 25.51583 * 14 12 11 41 41 H 1.08997 * 113.61512 * 254.61533 * 14 12 11 42 42 H 0.96998 * 120.00095 * 24.99566 * 17 15 14 43 43 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 44 44 H 1.09001 * 113.61484 * 105.46109 * 26 12 11 45 45 H 1.08998 * 113.61333 * 334.55663 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2913 2.1518 -1.1357 5 6 2.7025 3.3307 -0.7590 6 6 3.0961 4.4641 -1.6708 7 6 2.7179 3.3582 0.6541 8 6 3.1190 4.4935 1.5026 9 8 4.2776 4.6110 1.8532 10 7 2.2020 5.4018 1.8906 11 6 2.6009 6.5306 2.7349 12 6 1.3798 7.4048 3.0278 13 1 0.4941 6.8230 3.2830 14 6 1.6659 8.5538 4.0092 15 6 0.7682 9.4312 3.1209 16 1 -0.2844 9.4044 3.4023 17 7 1.2743 10.7940 2.9397 18 6 0.4083 11.8118 2.6404 19 1 -0.6476 11.6097 2.5375 20 6 0.8877 13.1032 2.4693 21 7 2.1746 13.3494 2.5942 22 14 -0.2934 14.4914 2.0603 23 1 0.4630 15.7627 1.9302 24 1 -1.2980 14.6226 3.1460 25 1 -0.9842 14.1926 0.7802 26 6 1.1223 8.4836 1.9626 27 6 2.2801 2.1213 1.0903 28 17 2.1024 1.6173 2.7420 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 4.1608 4.3973 -1.8947 35 1 2.5254 4.4001 -2.5973 36 1 2.8869 5.4147 -1.1802 37 1 1.2780 5.3082 1.6108 38 1 3.3555 7.1229 2.2172 39 1 3.0130 6.1558 3.6718 40 1 2.7095 8.8682 4.0210 41 1 1.2620 8.3861 5.0076 42 1 2.2227 10.9755 3.0319 43 1 2.7880 12.6285 2.8062 44 1 0.2795 8.2592 1.3088 45 1 2.0173 8.7789 1.4149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086274969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:43 Heat of formation + Delta-G solvation = 33.946241 kcal Electronic energy + Delta-G solvation = -26571.142058 eV Core-core repulsion = 22650.987546 eV Total energy + Delta-G solvation = -3920.154512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.67434 -40.70722 -39.71950 -38.19817 -36.27418 -35.99598 -35.17030 -32.43097 -32.12219 -31.33248 -28.95825 -28.35758 -26.51521 -25.77323 -24.87623 -23.24362 -22.51912 -21.78194 -21.17526 -20.43206 -19.39113 -18.82287 -17.69107 -17.38592 -16.75077 -16.66853 -16.44904 -16.17158 -15.78336 -15.58006 -15.28610 -15.13992 -14.78752 -14.48784 -14.36167 -14.05621 -13.69073 -13.44577 -13.42289 -13.29916 -13.19276 -13.09369 -12.92774 -12.72598 -12.61741 -12.53132 -12.30383 -12.08683 -11.92702 -11.82087 -11.65412 -11.39003 -11.18357 -10.94201 -10.79665 -10.42187 -10.13824 -9.87026 -9.06664 -8.37194 -5.30603 0.09348 0.23200 1.11896 1.35769 1.40485 1.59442 1.69594 1.85730 2.20533 2.73831 3.18552 3.40227 3.62772 3.64465 3.68995 3.78998 3.94687 3.95141 3.98769 4.12826 4.14306 4.24216 4.28099 4.36152 4.51698 4.62089 4.65147 4.68776 4.70921 4.75128 4.90633 4.91802 4.92409 5.00310 5.14354 5.16681 5.24946 5.29342 5.38144 5.48913 5.61308 5.67528 6.26364 6.46088 6.51012 7.12058 7.12948 8.02758 8.15273 9.14535 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019051 B = 0.002074 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.396032 B =13499.204443 C =13815.921297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.342 5.342 4 N -0.285 5.285 5 C 0.115 3.885 6 C -0.079 4.079 7 C -0.282 4.282 8 C 0.600 3.400 9 O -0.573 6.573 10 N -0.700 5.700 11 C 0.138 3.862 12 C -0.094 4.094 13 H 0.120 0.880 14 C -0.136 4.136 15 C 0.147 3.853 16 H 0.077 0.923 17 N -0.742 5.742 18 C -0.331 4.331 19 H 0.069 0.931 20 C -0.110 4.110 21 N -0.978 5.978 22 Si 1.128 2.872 23 H -0.295 1.295 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.152 4.152 27 C 0.161 3.839 28 Cl 0.025 6.975 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.414 0.586 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.359 0.641 43 H 0.243 0.757 44 H 0.066 0.934 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.905 -32.698 -4.577 33.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.124 5.124 4 N -0.108 5.108 5 C -0.051 4.051 6 C -0.138 4.138 7 C -0.298 4.298 8 C 0.385 3.615 9 O -0.452 6.452 10 N -0.351 5.351 11 C 0.015 3.985 12 C -0.113 4.113 13 H 0.138 0.862 14 C -0.176 4.176 15 C 0.037 3.963 16 H 0.095 0.905 17 N -0.381 5.381 18 C -0.462 4.462 19 H 0.087 0.913 20 C -0.300 4.300 21 N -0.626 5.626 22 Si 0.952 3.048 23 H -0.222 1.222 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.192 4.192 27 C 0.002 3.998 28 Cl 0.053 6.947 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.250 0.750 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.191 0.809 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.810 -31.968 -5.486 32.790 hybrid contribution 0.582 -1.014 1.168 1.653 sum -4.228 -32.982 -4.317 33.531 Atomic orbital electron populations 1.22166 0.92334 1.05060 1.02704 1.22346 0.96811 0.75075 1.06783 1.48967 1.48847 1.13442 1.01160 1.77250 1.23643 1.03983 1.05968 1.22597 0.96195 0.94743 0.91540 1.20392 1.03169 0.92267 0.97959 1.19746 1.20374 0.95209 0.94478 1.17282 0.84552 0.81268 0.78395 1.90787 1.20277 1.76739 1.57390 1.45896 1.12465 1.25168 1.51583 1.21298 0.96699 0.86297 0.94217 1.22451 0.98082 0.93743 0.97017 0.86188 1.23336 1.00179 0.95442 0.98606 1.21898 0.96874 0.82225 0.95262 0.90502 1.42645 1.06061 1.04719 1.84720 1.20462 0.91766 0.90779 1.43242 0.91303 1.27223 1.00330 1.01175 1.01309 1.70995 1.03056 1.34231 1.54300 0.82630 0.72487 0.72820 0.76824 1.22160 1.20267 1.20327 1.23714 1.00925 0.96894 0.97706 1.21992 1.01490 0.91727 0.84601 1.98446 1.95850 1.90746 1.09662 0.87340 0.92333 0.92368 0.86385 0.86800 0.89231 0.88358 0.90160 0.75000 0.92878 0.91226 0.91281 0.90281 0.80913 0.94661 0.91504 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 10.24 71.98 0.74 -0.33 16 2 C 0.11 0.94 6.97 86.38 0.60 1.54 16 3 N -0.34 -5.85 3.58 -336.05 -1.20 -7.05 16 4 N -0.28 -5.93 12.49 -46.66 -0.58 -6.51 16 5 C 0.12 2.48 7.26 43.53 0.32 2.80 16 6 C -0.08 -1.38 10.28 71.23 0.73 -0.65 16 7 C -0.28 -6.54 5.88 -20.12 -0.12 -6.65 16 8 C 0.60 15.99 7.20 86.63 0.62 16.61 16 9 O -0.57 -20.03 17.11 -4.09 -0.07 -20.10 16 10 N -0.70 -15.47 5.55 -466.49 -2.59 -18.06 16 11 C 0.14 3.41 5.51 86.38 0.48 3.88 16 12 C -0.09 -2.25 3.75 -10.26 -0.04 -2.29 16 13 H 0.12 2.25 8.14 -2.39 -0.02 2.24 16 14 C -0.14 -4.09 7.39 31.12 0.23 -3.86 16 15 C 0.15 5.55 4.48 45.52 0.20 5.75 16 16 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 17 N -0.74 -37.31 5.40 -320.44 -1.73 -39.04 16 18 C -0.33 -18.57 9.97 84.03 0.84 -17.74 16 19 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 20 C -0.11 -6.41 5.50 84.86 0.47 -5.94 16 21 N -0.98 -62.03 13.70 21.65 0.30 -61.73 16 22 Si 1.13 52.06 29.92 68.60 2.05 54.11 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 26 C -0.15 -4.76 7.43 31.12 0.23 -4.53 16 27 C 0.16 3.14 7.54 84.32 0.64 3.78 16 28 Cl 0.02 0.40 28.56 -2.72 -0.08 0.32 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 0.62 7.77 -2.38 -0.02 0.60 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.43 8.01 -2.39 -0.02 1.41 16 37 H 0.41 7.17 8.46 -92.71 -0.78 6.38 16 38 H 0.05 1.54 7.85 -2.38 -0.02 1.52 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.36 19.08 6.76 -92.71 -0.63 18.45 16 43 H 0.24 15.40 6.77 -92.71 -0.63 14.77 16 44 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 2.08 7.90 -2.39 -0.02 2.06 16 Total: -1.00 -76.43 395.97 1.78 -74.65 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: -0.25 Total: 31.04 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 5.93 Total: -7.63 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -5.81 Total: -132.40 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.07 Total: -20.10 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.05 Total: 54.11 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -76.43 1.78 -74.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086274969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.592 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds