Wall clock time and date at job start Sat Apr 11 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34948 * 126.03607 * 2 1 4 4 C 1.35308 * 107.74625 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04160 * 179.97438 * 4 3 2 6 6 H 1.09006 * 110.63932 * 1.69132 * 5 4 3 7 7 C 1.54322 * 110.72293 * 238.55365 * 5 4 3 8 8 N 1.47019 * 107.27265 * 219.44353 * 7 5 4 9 9 C 1.34777 * 125.65328 * 178.97291 * 8 7 5 10 10 O 1.21283 * 119.99781 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00675 * 179.97438 * 9 8 7 12 12 H 1.09007 * 115.54436 * 34.32893 * 11 9 8 13 13 C 1.52989 * 117.50240 * 179.97438 * 11 9 8 14 14 C 1.52997 * 117.49903 * 248.62837 * 11 9 8 15 15 F 1.39899 * 117.50363 * 359.97438 * 14 11 9 16 16 F 1.39904 * 117.49970 * 145.02114 * 14 11 9 17 17 C 1.47429 * 108.70385 * 358.93546 * 8 7 5 18 18 C 1.54913 * 104.82565 * 24.13064 * 17 8 7 19 19 H 1.08992 * 111.00463 * 81.07100 * 18 17 8 20 20 N 1.46511 * 110.99822 * 204.91564 * 18 17 8 21 21 C 1.36930 * 119.99862 * 267.19392 * 20 18 17 22 22 H 1.07997 * 120.00236 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99762 * 180.02562 * 21 20 18 24 24 N 1.31612 * 120.00130 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47236 * 90.00270 * 25 23 21 27 27 H 1.48498 * 109.47035 * 210.00388 * 25 23 21 28 28 H 1.48508 * 109.47039 * 329.99964 * 25 23 21 29 29 C 1.39867 * 107.92304 * 0.02562 * 4 3 2 30 30 N 1.30841 * 108.19839 * 359.73980 * 29 4 3 31 31 H 1.09001 * 109.47060 * 90.00421 * 1 2 3 32 32 H 1.09004 * 109.47073 * 209.99910 * 1 2 3 33 33 H 1.09000 * 109.47212 * 329.99993 * 1 2 3 34 34 H 1.08007 * 126.12452 * 359.96188 * 3 2 1 35 35 H 1.09002 * 109.88101 * 338.85655 * 7 5 4 36 36 H 1.08998 * 109.88853 * 100.02046 * 7 5 4 37 37 H 1.09000 * 117.50284 * 214.97634 * 13 11 9 38 38 H 1.08998 * 117.50372 * 359.97438 * 13 11 9 39 39 H 1.08995 * 110.36616 * 142.96575 * 17 8 7 40 40 H 1.08999 * 110.36459 * 265.29515 * 17 8 7 41 41 H 0.96997 * 119.99626 * 87.20021 * 20 18 17 42 42 H 0.97002 * 120.00433 * 179.97438 * 24 23 21 43 43 H 1.08001 * 125.90355 * 179.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0002 6 1 4.4855 2.5978 0.0296 7 6 5.6509 1.2512 -1.2307 8 7 7.0513 1.3042 -0.7862 9 6 8.1308 1.0825 -1.5621 10 8 7.9886 0.8117 -2.7358 11 6 9.5144 1.1710 -0.9716 12 1 9.6058 0.8408 0.0633 13 6 10.6986 0.9080 -1.9039 14 6 10.4029 2.3312 -1.4245 15 9 9.8690 3.2285 -2.3557 16 9 11.2709 2.8876 -0.4788 17 6 7.0793 1.6410 0.6488 18 6 5.6994 1.1896 1.1890 19 1 5.6887 0.1178 1.3866 20 7 5.3321 1.9463 2.3886 21 6 5.6417 1.4557 3.6289 22 1 6.1571 0.5113 3.7229 23 6 5.2932 2.1724 4.7656 24 7 4.6648 3.3231 4.6511 25 14 5.7163 1.5035 6.4576 26 1 7.0583 1.9937 6.8624 27 1 4.7034 1.9659 7.4401 28 1 5.7234 0.0191 6.4156 29 6 3.5347 -0.7320 0.0003 30 7 2.2892 -1.1327 0.0053 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.9281 2.1194 -0.0006 35 1 5.4234 0.2594 -1.6216 36 1 5.4774 2.0037 -1.9999 37 1 11.5693 0.4058 -1.4823 38 1 10.4770 0.6706 -2.9443 39 1 7.8795 1.0969 1.1506 40 1 7.2068 2.7150 0.7840 41 1 4.8695 2.7946 2.3041 42 1 4.4209 3.8237 5.4453 43 1 4.4055 -1.3709 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086977634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:02 Heat of formation + Delta-G solvation = 4.242428 kcal Electronic energy + Delta-G solvation = -29798.881519 eV Core-core repulsion = 25325.642272 eV Total energy + Delta-G solvation = -4473.239247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.80445 -47.47760 -41.06933 -39.92464 -37.75693 -35.57597 -34.13598 -33.36419 -31.87332 -30.73681 -28.91753 -27.54433 -26.53294 -24.85153 -23.73190 -22.71048 -22.20983 -21.27940 -20.49305 -19.45709 -19.24266 -18.18577 -17.42061 -17.14648 -16.62716 -16.31115 -16.13172 -15.51773 -15.26436 -15.17323 -14.51690 -14.19573 -14.12926 -13.93145 -13.78824 -13.63766 -13.52259 -13.31957 -13.03216 -12.93773 -12.75205 -12.66308 -12.48400 -12.27011 -12.07465 -11.61757 -11.44461 -11.19715 -10.90032 -10.88097 -10.60608 -10.37764 -10.19891 -10.13142 -9.92574 -9.77897 -9.17967 -9.09180 -8.47150 -8.06058 -7.10763 -5.88445 -3.18497 2.11773 2.13982 2.70137 2.78050 2.94059 3.08749 3.34028 3.37070 3.43315 3.44099 4.02507 4.17164 4.42188 4.48249 4.62670 4.69070 5.00641 5.07930 5.10627 5.14115 5.20074 5.26965 5.37338 5.41158 5.43338 5.51684 5.58216 5.61555 5.69114 5.80448 5.92001 5.96705 6.12611 6.23894 6.31265 6.41199 6.45051 6.80454 6.88868 7.20922 7.59558 7.62696 7.91607 8.15333 8.28876 9.41346 9.94134 10.29054 11.33436 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007599 B = 0.004262 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3683.660667 B = 6568.531933 C = 9541.457654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.381 5.381 3 C 0.063 3.937 4 C -0.205 4.205 5 C -0.032 4.032 6 H 0.089 0.911 7 C 0.122 3.878 8 N -0.603 5.603 9 C 0.556 3.444 10 O -0.540 6.540 11 C -0.188 4.188 12 H 0.151 0.849 13 C -0.142 4.142 14 C 0.222 3.778 15 F -0.152 7.152 16 F -0.154 7.154 17 C 0.066 3.934 18 C 0.185 3.815 19 H 0.071 0.929 20 N -0.705 5.705 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.006 4.006 24 N -0.929 5.929 25 Si 0.905 3.095 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.060 3.940 30 N -0.303 5.303 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.171 0.829 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.942 -4.040 -12.438 13.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.164 5.164 3 C -0.083 4.083 4 C -0.216 4.216 5 C -0.054 4.054 6 H 0.108 0.892 7 C -0.001 4.001 8 N -0.335 5.335 9 C 0.343 3.657 10 O -0.418 6.418 11 C -0.210 4.210 12 H 0.169 0.831 13 C -0.180 4.180 14 C 0.185 3.815 15 F -0.132 7.132 16 F -0.135 7.135 17 C -0.060 4.060 18 C 0.072 3.928 19 H 0.089 0.911 20 N -0.344 5.344 21 C -0.376 4.376 22 H 0.090 0.910 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.736 3.264 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.127 4.127 30 N -0.125 5.125 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.189 0.811 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.967 -5.234 -12.896 13.951 hybrid contribution 0.620 1.060 1.302 1.790 sum 1.587 -4.174 -11.593 12.424 Atomic orbital electron populations 1.21772 0.74694 1.04371 1.02794 1.48316 1.06331 1.03922 1.57784 1.22263 0.90816 0.93207 1.01976 1.19623 0.93506 0.93441 1.15058 1.20783 0.91339 0.98629 0.94612 0.89224 1.21989 0.79366 1.01960 0.96761 1.48379 1.05709 1.67567 1.11829 1.18724 0.84003 0.77601 0.85394 1.90697 1.86112 1.49243 1.15795 1.23700 0.92268 1.01345 1.03639 0.83147 1.24304 0.98251 0.92586 1.02888 1.19661 0.93703 0.82413 0.85757 1.93072 1.85857 1.70021 1.64269 1.93067 1.69169 1.87315 1.63912 1.23687 1.03119 1.01243 0.77922 1.21332 0.88733 0.96464 0.86304 0.91084 1.42230 1.68414 1.23901 0.99830 1.19218 1.31655 1.03487 0.83286 0.91012 1.24727 1.00766 0.96965 0.97845 1.69646 1.44904 1.14600 1.28478 0.86226 0.77605 0.78208 0.84352 1.21569 1.21781 1.20683 1.23637 0.94929 0.94652 0.99432 1.77280 1.01682 1.08379 1.25117 0.91187 0.89609 0.89618 0.81141 0.91095 0.91603 0.85086 0.84742 0.90960 0.90823 0.77877 0.93389 0.80551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 11.47 59.85 0.69 1.66 16 2 N -0.38 -5.33 4.01 -68.16 -0.27 -5.60 16 3 C 0.06 0.88 11.40 -17.23 -0.20 0.68 16 4 C -0.20 -3.09 4.93 -105.06 -0.52 -3.61 16 5 C -0.03 -0.48 3.01 -89.94 -0.27 -0.75 16 6 H 0.09 1.34 8.00 -51.93 -0.42 0.92 16 7 C 0.12 1.74 6.43 -3.07 -0.02 1.72 16 8 N -0.60 -8.97 3.33 -170.52 -0.57 -9.53 16 9 C 0.56 8.37 7.27 -10.99 -0.08 8.29 16 10 O -0.54 -9.48 16.58 5.56 0.09 -9.38 16 11 C -0.19 -2.24 5.52 -91.78 -0.51 -2.75 16 12 H 0.15 1.55 7.07 -51.93 -0.37 1.18 16 13 C -0.14 -1.36 10.02 -26.71 -0.27 -1.63 16 14 C 0.22 2.75 5.20 -26.71 -0.14 2.61 16 15 F -0.15 -2.23 17.13 2.25 0.04 -2.19 16 16 F -0.15 -1.97 17.60 2.25 0.04 -1.93 16 17 C 0.07 1.04 6.39 -2.52 -0.02 1.02 16 18 C 0.18 3.22 3.13 -65.78 -0.21 3.01 16 19 H 0.07 1.28 7.49 -51.93 -0.39 0.90 16 20 N -0.70 -15.70 5.24 -51.35 -0.27 -15.96 16 21 C -0.25 -6.24 9.96 -15.06 -0.15 -6.39 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 24 N -0.93 -26.35 13.06 55.49 0.72 -25.62 16 25 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 29 C 0.06 0.92 10.76 -17.36 -0.19 0.74 16 30 N -0.30 -4.90 12.58 30.62 0.39 -4.52 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.17 1.93 8.06 -52.48 -0.42 1.51 16 35 H 0.07 1.01 7.37 -51.93 -0.38 0.63 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.13 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.13 1.32 7.67 -51.93 -0.40 0.92 16 39 H 0.07 1.07 7.00 -51.93 -0.36 0.70 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.39 9.24 7.77 -40.82 -0.32 8.92 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -32.59 374.85 -6.73 -39.32 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.56 Total: 9.09 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: -1.96 Total: 4.35 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.00 Total: -61.24 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.59 -6.73 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086977634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.563 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds