Wall clock time and date at job start Sat Apr 11 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34948 * 126.03607 * 2 1 4 4 C 1.35308 * 107.74625 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04160 * 179.97438 * 4 3 2 6 6 H 1.09006 * 110.63932 * 1.69132 * 5 4 3 7 7 C 1.54322 * 110.72293 * 238.55365 * 5 4 3 8 8 N 1.47019 * 107.27265 * 219.44353 * 7 5 4 9 9 C 1.34777 * 125.65328 * 178.97291 * 8 7 5 10 10 O 1.21283 * 119.99781 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00675 * 179.97438 * 9 8 7 12 12 H 1.09007 * 115.54436 * 34.32893 * 11 9 8 13 13 C 1.52989 * 117.50240 * 179.97438 * 11 9 8 14 14 C 1.52997 * 117.49903 * 248.62837 * 11 9 8 15 15 F 1.39899 * 117.50363 * 359.97438 * 14 11 9 16 16 F 1.39904 * 117.49970 * 145.02114 * 14 11 9 17 17 C 1.47429 * 108.70385 * 358.93546 * 8 7 5 18 18 C 1.54913 * 104.82565 * 24.13064 * 17 8 7 19 19 H 1.08992 * 111.00463 * 81.07100 * 18 17 8 20 20 N 1.46511 * 110.99822 * 204.91564 * 18 17 8 21 21 C 1.36930 * 119.99862 * 267.19392 * 20 18 17 22 22 H 1.07997 * 120.00236 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99762 * 180.02562 * 21 20 18 24 24 N 1.31612 * 120.00130 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47236 * 90.00270 * 25 23 21 27 27 H 1.48498 * 109.47035 * 210.00388 * 25 23 21 28 28 H 1.48508 * 109.47039 * 329.99964 * 25 23 21 29 29 C 1.39867 * 107.92304 * 0.02562 * 4 3 2 30 30 N 1.30841 * 108.19839 * 359.73980 * 29 4 3 31 31 H 1.09001 * 109.47060 * 90.00421 * 1 2 3 32 32 H 1.09004 * 109.47073 * 209.99910 * 1 2 3 33 33 H 1.09000 * 109.47212 * 329.99993 * 1 2 3 34 34 H 1.08007 * 126.12452 * 359.96188 * 3 2 1 35 35 H 1.09002 * 109.88101 * 338.85655 * 7 5 4 36 36 H 1.08998 * 109.88853 * 100.02046 * 7 5 4 37 37 H 1.09000 * 117.50284 * 214.97634 * 13 11 9 38 38 H 1.08998 * 117.50372 * 359.97438 * 13 11 9 39 39 H 1.08995 * 110.36616 * 142.96575 * 17 8 7 40 40 H 1.08999 * 110.36459 * 265.29515 * 17 8 7 41 41 H 0.96997 * 119.99626 * 87.20021 * 20 18 17 42 42 H 0.97002 * 120.00433 * 179.97438 * 24 23 21 43 43 H 1.08001 * 125.90355 * 179.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6666 0.0006 5 6 4.7680 1.5453 0.0002 6 1 4.4855 2.5978 0.0296 7 6 5.6509 1.2512 -1.2307 8 7 7.0513 1.3042 -0.7862 9 6 8.1308 1.0825 -1.5621 10 8 7.9886 0.8117 -2.7358 11 6 9.5144 1.1710 -0.9716 12 1 9.6058 0.8408 0.0633 13 6 10.6986 0.9080 -1.9039 14 6 10.4029 2.3312 -1.4245 15 9 9.8690 3.2285 -2.3557 16 9 11.2709 2.8876 -0.4788 17 6 7.0793 1.6410 0.6488 18 6 5.6994 1.1896 1.1890 19 1 5.6887 0.1178 1.3866 20 7 5.3321 1.9463 2.3886 21 6 5.6417 1.4557 3.6289 22 1 6.1571 0.5113 3.7229 23 6 5.2932 2.1724 4.7656 24 7 4.6648 3.3231 4.6511 25 14 5.7163 1.5035 6.4576 26 1 7.0583 1.9937 6.8624 27 1 4.7034 1.9659 7.4401 28 1 5.7234 0.0191 6.4156 29 6 3.5347 -0.7320 0.0003 30 7 2.2892 -1.1327 0.0053 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.9281 2.1194 -0.0006 35 1 5.4234 0.2594 -1.6216 36 1 5.4774 2.0037 -1.9999 37 1 11.5693 0.4058 -1.4823 38 1 10.4770 0.6706 -2.9443 39 1 7.8795 1.0969 1.1506 40 1 7.2068 2.7150 0.7840 41 1 4.8695 2.7946 2.3041 42 1 4.4209 3.8237 5.4453 43 1 4.4055 -1.3709 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086977634.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:00 Heat of formation + Delta-G solvation = -16.226604 kcal Electronic energy + Delta-G solvation = -29799.769123 eV Core-core repulsion = 25325.642272 eV Total energy + Delta-G solvation = -4474.126851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -49.79531 -48.48490 -42.19767 -41.11816 -39.02685 -36.58251 -35.83428 -34.46022 -33.27178 -32.28426 -30.08049 -29.02514 -27.50880 -26.12765 -25.33679 -23.59960 -23.37513 -22.55014 -21.68853 -20.68526 -20.36617 -19.27768 -19.13735 -18.21084 -17.84583 -17.43987 -17.15374 -16.86497 -16.38648 -16.24514 -16.12976 -15.34828 -15.29145 -15.13624 -15.04186 -14.76949 -14.72264 -14.58342 -14.33533 -14.17592 -13.89327 -13.64607 -13.50808 -13.36251 -13.15863 -13.04155 -12.87432 -12.57389 -12.46861 -12.24209 -12.14300 -11.81157 -11.75574 -11.39543 -11.37017 -11.03434 -10.92200 -10.28107 -9.73501 -9.28028 -8.90732 -7.90338 -5.17890 1.01671 1.05097 1.51034 1.52050 1.58947 1.69984 1.77935 1.90290 1.98875 2.32186 2.59017 3.11739 3.15547 3.41177 3.49577 3.56313 3.71346 3.85853 3.92789 4.04831 4.13365 4.25714 4.37007 4.38569 4.45466 4.47419 4.53963 4.59389 4.61048 4.70592 4.77041 4.81317 4.85275 4.97661 5.05328 5.17614 5.21932 5.44709 5.59577 5.74993 6.20528 6.30532 6.40042 6.78758 6.95730 7.39527 8.11197 8.35430 9.32355 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.007599 B = 0.004262 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3683.660667 B = 6568.531933 C = 9541.457654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.062 3.938 4 C -0.225 4.225 5 C -0.016 4.016 6 H 0.089 0.911 7 C 0.126 3.874 8 N -0.602 5.602 9 C 0.552 3.448 10 O -0.567 6.567 11 C -0.196 4.196 12 H 0.170 0.830 13 C -0.109 4.109 14 C 0.202 3.798 15 F -0.171 7.171 16 F -0.158 7.158 17 C 0.080 3.920 18 C 0.182 3.818 19 H 0.067 0.933 20 N -0.713 5.713 21 C -0.234 4.234 22 H 0.078 0.922 23 C -0.066 4.066 24 N -0.964 5.964 25 Si 0.960 3.040 26 H -0.288 1.288 27 H -0.301 1.301 28 H -0.273 1.273 29 C 0.049 3.951 30 N -0.333 5.333 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.196 0.804 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.170 0.830 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.377 0.623 42 H 0.249 0.751 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 -5.006 -12.888 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.084 4.084 4 C -0.237 4.237 5 C -0.037 4.037 6 H 0.108 0.892 7 C 0.003 3.997 8 N -0.334 5.334 9 C 0.341 3.659 10 O -0.447 6.447 11 C -0.218 4.218 12 H 0.187 0.813 13 C -0.146 4.146 14 C 0.165 3.835 15 F -0.152 7.152 16 F -0.138 7.138 17 C -0.046 4.046 18 C 0.071 3.929 19 H 0.085 0.915 20 N -0.351 5.351 21 C -0.366 4.366 22 H 0.096 0.904 23 C -0.259 4.259 24 N -0.614 5.614 25 Si 0.791 3.209 26 H -0.215 1.215 27 H -0.229 1.229 28 H -0.198 1.198 29 C -0.136 4.136 30 N -0.155 5.155 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.213 0.787 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.188 0.812 38 H 0.151 0.849 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.210 0.790 42 H 0.058 0.942 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.614 -6.248 -13.381 14.856 hybrid contribution 0.362 1.329 1.335 1.918 sum 1.977 -4.919 -12.047 13.162 Atomic orbital electron populations 1.22145 0.72232 1.05543 1.04584 1.48703 1.07798 1.03286 1.56604 1.22718 0.90688 0.94361 1.00679 1.19711 0.94010 0.93401 1.16541 1.20580 0.91097 0.98589 0.93444 0.89241 1.21962 0.79094 1.02154 0.96455 1.48393 1.06112 1.67478 1.11417 1.19227 0.84988 0.76669 0.85053 1.90682 1.86676 1.50431 1.16931 1.23781 0.91024 1.01815 1.05158 0.81298 1.24494 0.97971 0.89637 1.02538 1.20006 0.94463 0.82953 0.86106 1.93028 1.86294 1.70875 1.64959 1.93056 1.69153 1.87508 1.64132 1.23339 1.02125 1.00637 0.78468 1.21433 0.90262 0.95596 0.85641 0.91485 1.42294 1.68580 1.23855 1.00421 1.19562 1.29528 1.03026 0.84438 0.90444 1.25370 1.02054 0.97625 1.00822 1.69778 1.47122 1.15969 1.28569 0.85337 0.76865 0.77952 0.80790 1.21471 1.22855 1.19767 1.23850 0.95222 0.95068 0.99480 1.77212 1.02230 1.09826 1.26211 0.89073 0.89420 0.87513 0.78679 0.90917 0.91299 0.81208 0.84861 0.89678 0.91929 0.79005 0.94202 0.79712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 11.47 127.77 1.47 3.04 16 2 N -0.38 -10.17 4.01 -369.54 -1.48 -11.65 16 3 C 0.06 1.66 11.40 83.54 0.95 2.62 16 4 C -0.22 -6.63 4.93 -20.15 -0.10 -6.73 16 5 C -0.02 -0.47 3.01 -10.36 -0.03 -0.50 16 6 H 0.09 2.62 8.00 -2.38 -0.02 2.60 16 7 C 0.13 3.50 6.43 86.73 0.56 4.06 16 8 N -0.60 -17.27 3.33 -811.79 -2.70 -19.97 16 9 C 0.55 15.92 7.27 87.66 0.64 16.55 16 10 O -0.57 -19.33 16.58 -3.04 -0.05 -19.38 16 11 C -0.20 -4.28 5.52 -11.55 -0.06 -4.34 16 12 H 0.17 3.00 7.07 -2.38 -0.02 2.98 16 13 C -0.11 -1.76 10.02 30.61 0.31 -1.45 16 14 C 0.20 4.68 5.20 30.61 0.16 4.84 16 15 F -0.17 -4.93 17.13 44.97 0.77 -4.16 16 16 F -0.16 -3.79 17.60 44.97 0.79 -3.00 16 17 C 0.08 2.42 6.39 86.86 0.55 2.98 16 18 C 0.18 6.21 3.13 46.38 0.15 6.36 16 19 H 0.07 2.37 7.49 -2.39 -0.02 2.35 16 20 N -0.71 -31.58 5.24 -316.37 -1.66 -33.24 16 21 C -0.23 -11.75 9.96 84.04 0.84 -10.92 16 22 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 23 C -0.07 -3.53 5.50 84.86 0.47 -3.06 16 24 N -0.96 -55.30 13.06 21.65 0.28 -55.02 16 25 Si 0.96 43.88 29.55 68.60 2.03 45.90 16 26 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 29 C 0.05 1.49 10.76 85.23 0.92 2.41 16 30 N -0.33 -10.55 12.58 -57.02 -0.72 -11.27 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 33 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.20 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.07 2.02 7.37 -2.39 -0.02 2.00 16 36 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.17 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.13 2.28 7.67 -2.39 -0.02 2.26 16 39 H 0.08 2.36 7.00 -2.39 -0.02 2.34 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.38 18.13 7.77 -92.71 -0.72 17.41 16 42 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 43 H 0.19 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -70.11 374.85 4.40 -65.71 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.34 Total: 30.23 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.80 Total: 15.85 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -6.28 Total: -131.15 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 1.56 Total: -7.16 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -70.11 4.40 -65.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086977634.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.479 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds