Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34946 * 126.03460 * 2 1 4 4 C 1.35313 * 107.74743 * 180.14398 * 3 2 1 5 5 C 1.50698 * 126.04148 * 179.86729 * 4 3 2 6 6 H 1.09001 * 110.92098 * 355.81872 * 5 4 3 7 7 C 1.54915 * 111.00654 * 231.91205 * 5 4 3 8 8 N 1.47425 * 104.83334 * 204.91855 * 7 5 4 9 9 C 1.34776 * 125.64906 * 204.09456 * 8 7 5 10 10 O 1.21278 * 119.99712 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99804 * 180.02562 * 9 8 7 12 12 H 1.09002 * 115.55397 * 34.33372 * 11 9 8 13 13 C 1.53001 * 117.49950 * 248.61945 * 11 9 8 14 14 C 1.52997 * 59.99992 * 252.51500 * 13 11 9 15 15 F 1.39908 * 117.49742 * 252.51180 * 14 13 11 16 16 F 1.39900 * 117.52078 * 107.48171 * 14 13 11 17 17 C 1.47022 * 108.70334 * 24.12789 * 8 7 5 18 18 C 1.54327 * 107.27336 * 358.94217 * 17 8 7 19 19 H 1.08993 * 110.72079 * 96.16743 * 18 17 8 20 20 N 1.46496 * 110.72108 * 219.44674 * 18 17 8 21 21 C 1.36943 * 119.99804 * 273.54304 * 20 18 17 22 22 H 1.07998 * 119.99804 * 359.97438 * 21 20 18 23 23 C 1.38807 * 119.99940 * 180.02562 * 21 20 18 24 24 N 1.31627 * 119.99848 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00122 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47118 * 90.00579 * 25 23 21 27 27 H 1.48503 * 109.47267 * 210.00293 * 25 23 21 28 28 H 1.48491 * 109.47267 * 330.00445 * 25 23 21 29 29 C 1.39869 * 107.91905 * 359.61142 * 4 3 2 30 30 N 1.30838 * 108.20061 * 0.23583 * 29 4 3 31 31 H 1.09000 * 109.47124 * 270.26275 * 1 2 3 32 32 H 1.09002 * 109.47514 * 30.26667 * 1 2 3 33 33 H 1.09003 * 109.46595 * 150.26606 * 1 2 3 34 34 H 1.08004 * 126.12924 * 359.97438 * 3 2 1 35 35 H 1.08997 * 110.36462 * 86.07849 * 7 5 4 36 36 H 1.08997 * 110.36247 * 323.75515 * 7 5 4 37 37 H 1.09002 * 117.49440 * 0.02562 * 13 11 9 38 38 H 1.08997 * 117.49979 * 145.02180 * 13 11 9 39 39 H 1.08997 * 109.88723 * 239.52626 * 17 8 7 40 40 H 1.09000 * 110.01436 * 118.43179 * 17 8 7 41 41 H 0.96996 * 120.00232 * 93.54399 * 20 18 17 42 42 H 0.96999 * 119.99494 * 179.97438 * 24 23 21 43 43 H 1.08003 * 125.90202 * 180.22170 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0032 5 6 4.7679 1.5454 -0.0072 6 1 4.4917 2.5973 -0.0815 7 6 5.7361 1.1437 -1.1479 8 7 7.0631 1.5982 -0.6941 9 6 8.1101 1.8861 -1.4924 10 8 8.0028 1.7784 -2.6957 11 6 9.4142 2.3417 -0.8899 12 1 9.6676 1.8981 0.0730 13 6 9.8362 3.7921 -1.1331 14 6 10.5648 2.6531 -1.8490 15 9 11.8618 2.3471 -1.4227 16 9 10.3261 2.4925 -3.2181 17 6 7.0554 1.6847 0.7735 18 6 5.6419 1.2873 1.2486 19 1 5.6113 0.2347 1.5299 20 7 5.2118 2.1358 2.3626 21 6 5.5479 1.8015 3.6474 22 1 6.1297 0.9121 3.8393 23 6 5.1400 2.6052 4.7030 24 7 5.4626 2.2836 5.9379 25 14 4.1331 4.1432 4.3711 26 1 2.6877 3.8037 4.3967 27 1 4.4215 5.1587 5.4157 28 1 4.4896 4.6900 3.0374 29 6 3.5347 -0.7320 0.0037 30 7 2.2892 -1.1327 0.0058 31 1 -0.3633 0.0047 1.0277 32 1 -0.3634 0.8876 -0.5180 33 1 -0.3632 -0.8924 -0.5097 34 1 1.9281 2.1194 -0.0004 35 1 5.4595 1.6461 -2.0748 36 1 5.7321 0.0625 -1.2856 37 1 9.1704 4.4168 -1.7285 38 1 10.3672 4.3031 -0.3300 39 1 7.2782 2.7049 1.0860 40 1 7.7931 0.9997 1.1915 41 1 4.6890 2.9344 2.1903 42 1 5.1779 2.8454 6.6756 43 1 4.4055 -1.3709 0.0067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086977635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = 9.757464 kcal Electronic energy + Delta-G solvation = -29735.440935 eV Core-core repulsion = 25262.440838 eV Total energy + Delta-G solvation = -4473.000097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.74227 -47.38491 -41.18260 -39.98140 -37.83899 -35.65224 -34.26665 -33.47047 -31.95689 -31.03420 -29.09571 -27.88565 -26.58866 -24.93127 -23.55891 -22.76223 -22.23943 -21.25468 -20.57798 -19.71152 -19.27357 -18.23918 -17.70953 -16.89064 -16.73646 -16.41130 -16.07678 -15.71405 -15.34915 -15.05751 -14.71443 -14.35697 -14.15622 -14.02386 -13.76196 -13.67401 -13.48726 -13.26513 -13.16939 -12.97489 -12.80495 -12.69306 -12.66756 -12.35894 -12.21764 -12.04650 -11.42052 -11.35388 -11.02123 -10.98515 -10.75355 -10.39694 -10.30122 -10.18271 -9.86629 -9.71155 -9.29673 -9.12333 -8.53002 -8.18275 -7.44044 -5.89387 -3.27165 2.00309 2.22482 2.58470 2.69852 2.88688 2.95631 3.25602 3.27698 3.28573 3.35910 4.07543 4.12428 4.43313 4.46498 4.49629 4.65585 4.86160 4.96095 4.99461 5.04766 5.08730 5.20616 5.24501 5.30826 5.40121 5.44104 5.46611 5.53405 5.61080 5.63443 5.72537 5.83890 5.90938 6.11312 6.20576 6.30923 6.36672 6.68102 6.76759 7.08455 7.55147 7.80352 7.84637 8.12297 8.29034 9.05544 9.77618 9.95422 11.28342 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008630 B = 0.003949 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.624266 B = 7087.826666 C = 9607.146349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.380 5.380 3 C 0.061 3.939 4 C -0.208 4.208 5 C -0.033 4.033 6 H 0.087 0.913 7 C 0.121 3.879 8 N -0.606 5.606 9 C 0.555 3.445 10 O -0.533 6.533 11 C -0.188 4.188 12 H 0.150 0.850 13 C -0.146 4.146 14 C 0.226 3.774 15 F -0.158 7.158 16 F -0.140 7.140 17 C 0.069 3.931 18 C 0.189 3.811 19 H 0.077 0.923 20 N -0.732 5.732 21 C -0.250 4.250 22 H 0.092 0.908 23 C 0.011 3.989 24 N -0.929 5.929 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.276 1.276 29 C 0.060 3.940 30 N -0.300 5.300 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.170 0.830 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.363 0.637 42 H 0.261 0.739 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 1.009 -14.421 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.162 5.162 3 C -0.085 4.085 4 C -0.220 4.220 5 C -0.054 4.054 6 H 0.105 0.895 7 C -0.001 4.001 8 N -0.339 5.339 9 C 0.342 3.658 10 O -0.411 6.411 11 C -0.210 4.210 12 H 0.168 0.832 13 C -0.184 4.184 14 C 0.188 3.812 15 F -0.138 7.138 16 F -0.121 7.121 17 C -0.057 4.057 18 C 0.077 3.923 19 H 0.095 0.905 20 N -0.374 5.374 21 C -0.379 4.379 22 H 0.110 0.890 23 C -0.186 4.186 24 N -0.576 5.576 25 Si 0.712 3.288 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.202 1.202 29 C -0.126 4.126 30 N -0.121 5.121 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.187 0.813 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.197 0.803 42 H 0.071 0.929 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.839 -0.174 -14.879 14.993 hybrid contribution -0.024 1.791 0.174 1.800 sum -1.863 1.618 -14.705 14.911 Atomic orbital electron populations 1.21795 0.74577 1.04050 1.03319 1.48340 1.06412 1.03902 1.57561 1.22236 0.90848 0.93224 1.02193 1.19579 0.93386 0.93549 1.15452 1.20877 0.91075 0.98253 0.95239 0.89485 1.22225 0.80659 0.99728 0.97528 1.48387 1.11655 1.65381 1.08461 1.18806 0.83195 0.77937 0.85891 1.90768 1.83005 1.53426 1.13857 1.23616 0.93977 1.01324 1.02067 0.83216 1.24265 1.00749 0.90926 1.02463 1.19522 0.78681 1.05453 0.77517 1.93048 1.37739 1.93969 1.89037 1.93114 1.93682 1.96023 1.29235 1.23374 1.02436 1.02620 0.77233 1.21199 0.88618 0.96075 0.86423 0.90513 1.42641 1.64330 1.27751 1.02630 1.19047 1.29222 1.08572 0.81080 0.88975 1.24659 1.00283 0.98564 0.95070 1.69697 1.50247 1.39703 0.97909 0.86603 0.80734 0.84243 0.77208 1.21149 1.21711 1.20247 1.23677 0.95049 0.94521 0.99361 1.77310 1.01675 1.08261 1.24850 0.90856 0.89743 0.89544 0.81271 0.90516 0.91002 0.85491 0.84803 0.90464 0.91440 0.80325 0.92927 0.80264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.47 59.85 0.69 1.57 16 2 N -0.38 -4.94 4.01 -68.16 -0.27 -5.22 16 3 C 0.06 0.78 11.40 -17.23 -0.20 0.58 16 4 C -0.21 -2.87 5.02 -105.06 -0.53 -3.40 16 5 C -0.03 -0.45 3.06 -89.62 -0.27 -0.73 16 6 H 0.09 1.16 8.00 -51.93 -0.42 0.75 16 7 C 0.12 1.58 6.35 -2.53 -0.02 1.56 16 8 N -0.61 -8.35 3.33 -170.52 -0.57 -8.92 16 9 C 0.55 8.06 7.63 -10.99 -0.08 7.97 16 10 O -0.53 -9.37 15.40 5.56 0.09 -9.28 16 11 C -0.19 -2.21 5.52 -91.77 -0.51 -2.71 16 12 H 0.15 1.52 7.74 -51.93 -0.40 1.12 16 13 C -0.15 -1.39 10.20 -26.73 -0.27 -1.66 16 14 C 0.23 2.76 5.19 -26.73 -0.14 2.62 16 15 F -0.16 -1.93 17.60 2.25 0.04 -1.89 16 16 F -0.14 -2.09 15.71 2.25 0.04 -2.05 16 17 C 0.07 1.00 6.03 -3.06 -0.02 0.98 16 18 C 0.19 3.06 3.04 -66.09 -0.20 2.86 16 19 H 0.08 1.31 7.66 -51.93 -0.40 0.92 16 20 N -0.73 -14.98 4.98 -51.65 -0.26 -15.24 16 21 C -0.25 -6.33 10.46 -15.06 -0.16 -6.49 16 22 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 23 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 24 N -0.93 -27.51 13.97 55.49 0.78 -26.74 16 25 Si 0.88 20.42 27.74 -169.99 -4.71 15.70 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -5.88 6.52 56.52 0.37 -5.52 16 29 C 0.06 0.85 10.84 -17.36 -0.19 0.67 16 30 N -0.30 -4.54 12.58 30.63 0.39 -4.16 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 36 H 0.07 0.90 7.37 -51.93 -0.38 0.51 16 37 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.13 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 40 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 41 H 0.36 7.37 5.58 -40.82 -0.23 7.14 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.18 2.16 7.96 -52.48 -0.42 1.75 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -33.72 371.33 -6.51 -40.23 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.62 Total: 7.95 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.99 Total: 4.03 kcal Atomic # 7 Polarization: -60.34 SS G_CDS: 0.06 Total: -60.27 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.71 Total: 15.70 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.72 -6.51 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086977635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.986 kcal (2) G-P(sol) polarization free energy of solvation -33.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds