Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34946 * 126.03460 * 2 1 4 4 C 1.35313 * 107.74743 * 180.14398 * 3 2 1 5 5 C 1.50698 * 126.04148 * 179.86729 * 4 3 2 6 6 H 1.09001 * 110.92098 * 355.81872 * 5 4 3 7 7 C 1.54915 * 111.00654 * 231.91205 * 5 4 3 8 8 N 1.47425 * 104.83334 * 204.91855 * 7 5 4 9 9 C 1.34776 * 125.64906 * 204.09456 * 8 7 5 10 10 O 1.21278 * 119.99712 * 0.02562 * 9 8 7 11 11 C 1.50700 * 119.99804 * 180.02562 * 9 8 7 12 12 H 1.09002 * 115.55397 * 34.33372 * 11 9 8 13 13 C 1.53001 * 117.49950 * 248.61945 * 11 9 8 14 14 C 1.52997 * 59.99992 * 252.51500 * 13 11 9 15 15 F 1.39908 * 117.49742 * 252.51180 * 14 13 11 16 16 F 1.39900 * 117.52078 * 107.48171 * 14 13 11 17 17 C 1.47022 * 108.70334 * 24.12789 * 8 7 5 18 18 C 1.54327 * 107.27336 * 358.94217 * 17 8 7 19 19 H 1.08993 * 110.72079 * 96.16743 * 18 17 8 20 20 N 1.46496 * 110.72108 * 219.44674 * 18 17 8 21 21 C 1.36943 * 119.99804 * 273.54304 * 20 18 17 22 22 H 1.07998 * 119.99804 * 359.97438 * 21 20 18 23 23 C 1.38807 * 119.99940 * 180.02562 * 21 20 18 24 24 N 1.31627 * 119.99848 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00122 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.47118 * 90.00579 * 25 23 21 27 27 H 1.48503 * 109.47267 * 210.00293 * 25 23 21 28 28 H 1.48491 * 109.47267 * 330.00445 * 25 23 21 29 29 C 1.39869 * 107.91905 * 359.61142 * 4 3 2 30 30 N 1.30838 * 108.20061 * 0.23583 * 29 4 3 31 31 H 1.09000 * 109.47124 * 270.26275 * 1 2 3 32 32 H 1.09002 * 109.47514 * 30.26667 * 1 2 3 33 33 H 1.09003 * 109.46595 * 150.26606 * 1 2 3 34 34 H 1.08004 * 126.12924 * 359.97438 * 3 2 1 35 35 H 1.08997 * 110.36462 * 86.07849 * 7 5 4 36 36 H 1.08997 * 110.36247 * 323.75515 * 7 5 4 37 37 H 1.09002 * 117.49440 * 0.02562 * 13 11 9 38 38 H 1.08997 * 117.49979 * 145.02180 * 13 11 9 39 39 H 1.08997 * 109.88723 * 239.52626 * 17 8 7 40 40 H 1.09000 * 110.01436 * 118.43179 * 17 8 7 41 41 H 0.96996 * 120.00232 * 93.54399 * 20 18 17 42 42 H 0.96999 * 119.99494 * 179.97438 * 24 23 21 43 43 H 1.08003 * 125.90202 * 180.22170 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0032 5 6 4.7679 1.5454 -0.0072 6 1 4.4917 2.5973 -0.0815 7 6 5.7361 1.1437 -1.1479 8 7 7.0631 1.5982 -0.6941 9 6 8.1101 1.8861 -1.4924 10 8 8.0028 1.7784 -2.6957 11 6 9.4142 2.3417 -0.8899 12 1 9.6676 1.8981 0.0730 13 6 9.8362 3.7921 -1.1331 14 6 10.5648 2.6531 -1.8490 15 9 11.8618 2.3471 -1.4227 16 9 10.3261 2.4925 -3.2181 17 6 7.0554 1.6847 0.7735 18 6 5.6419 1.2873 1.2486 19 1 5.6113 0.2347 1.5299 20 7 5.2118 2.1358 2.3626 21 6 5.5479 1.8015 3.6474 22 1 6.1297 0.9121 3.8393 23 6 5.1400 2.6052 4.7030 24 7 5.4626 2.2836 5.9379 25 14 4.1331 4.1432 4.3711 26 1 2.6877 3.8037 4.3967 27 1 4.4215 5.1587 5.4157 28 1 4.4896 4.6900 3.0374 29 6 3.5347 -0.7320 0.0037 30 7 2.2892 -1.1327 0.0058 31 1 -0.3633 0.0047 1.0277 32 1 -0.3634 0.8876 -0.5180 33 1 -0.3632 -0.8924 -0.5097 34 1 1.9281 2.1194 -0.0004 35 1 5.4595 1.6461 -2.0748 36 1 5.7321 0.0625 -1.2856 37 1 9.1704 4.4168 -1.7285 38 1 10.3672 4.3031 -0.3300 39 1 7.2782 2.7049 1.0860 40 1 7.7931 0.9997 1.1915 41 1 4.6890 2.9344 2.1903 42 1 5.1779 2.8454 6.6756 43 1 4.4055 -1.3709 0.0067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086977635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = -12.303029 kcal Electronic energy + Delta-G solvation = -29736.397549 eV Core-core repulsion = 25262.440838 eV Total energy + Delta-G solvation = -4473.956712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -49.70367 -48.37612 -42.20310 -41.11288 -39.04691 -36.62827 -35.90803 -34.46577 -33.43137 -32.48716 -30.18588 -29.22884 -27.47901 -26.09312 -25.09686 -23.69884 -23.29079 -22.45903 -21.71848 -20.89310 -20.34195 -19.54295 -19.16796 -17.87774 -17.82415 -17.54793 -17.07398 -16.83112 -16.36517 -16.26070 -16.11600 -15.67252 -15.25199 -15.02468 -14.97554 -14.74427 -14.69286 -14.48955 -14.36693 -14.10480 -13.92137 -13.77635 -13.58836 -13.40643 -13.38777 -13.18373 -12.92178 -12.56512 -12.39473 -12.27782 -12.17497 -11.78827 -11.72067 -11.39067 -11.28202 -11.01969 -10.90017 -10.30051 -9.68785 -9.41702 -9.09950 -7.94865 -5.29254 1.01416 1.18348 1.43461 1.46743 1.54415 1.64041 1.77467 1.87376 2.01282 2.28096 2.55155 3.10416 3.20780 3.35142 3.48154 3.53630 3.71918 3.79620 3.88815 3.94931 4.06493 4.27098 4.35556 4.41216 4.45808 4.47047 4.49604 4.57077 4.58397 4.70805 4.75855 4.78162 4.85352 4.99234 5.03131 5.16457 5.24456 5.43678 5.73871 5.85197 6.19942 6.27765 6.41150 6.78601 6.99026 7.14642 7.88217 8.07589 9.26252 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.008630 B = 0.003949 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3243.624266 B = 7087.826666 C = 9607.146349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.382 5.382 3 C 0.063 3.937 4 C -0.228 4.228 5 C -0.014 4.014 6 H 0.098 0.902 7 C 0.123 3.877 8 N -0.602 5.602 9 C 0.553 3.447 10 O -0.567 6.567 11 C -0.196 4.196 12 H 0.166 0.834 13 C -0.115 4.115 14 C 0.205 3.795 15 F -0.160 7.160 16 F -0.161 7.161 17 C 0.081 3.919 18 C 0.182 3.818 19 H 0.064 0.936 20 N -0.731 5.731 21 C -0.222 4.222 22 H 0.060 0.940 23 C -0.060 4.060 24 N -0.985 5.985 25 Si 0.948 3.052 26 H -0.285 1.285 27 H -0.304 1.304 28 H -0.241 1.241 29 C 0.049 3.951 30 N -0.335 5.335 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.201 0.799 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.166 0.834 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.369 0.631 42 H 0.255 0.745 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 2.947 -15.763 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 C -0.084 4.084 4 C -0.240 4.240 5 C -0.035 4.035 6 H 0.116 0.884 7 C 0.001 3.999 8 N -0.334 5.334 9 C 0.341 3.659 10 O -0.447 6.447 11 C -0.218 4.218 12 H 0.183 0.817 13 C -0.152 4.152 14 C 0.168 3.832 15 F -0.141 7.141 16 F -0.142 7.142 17 C -0.044 4.044 18 C 0.072 3.928 19 H 0.082 0.918 20 N -0.374 5.374 21 C -0.353 4.353 22 H 0.078 0.922 23 C -0.251 4.251 24 N -0.635 5.635 25 Si 0.776 3.224 26 H -0.211 1.211 27 H -0.232 1.232 28 H -0.165 1.165 29 C -0.137 4.137 30 N -0.157 5.157 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.111 0.889 34 H 0.218 0.782 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.152 0.848 38 H 0.183 0.817 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.203 0.797 42 H 0.064 0.936 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.741 1.742 -16.292 16.612 hybrid contribution 0.237 1.049 0.533 1.200 sum -2.504 2.791 -15.759 16.199 Atomic orbital electron populations 1.22153 0.72265 1.06016 1.04149 1.48725 1.07828 1.03380 1.56498 1.22770 0.90583 0.94486 1.00573 1.19678 0.94003 0.93348 1.16955 1.20691 0.90652 0.98811 0.93349 0.88406 1.22247 0.80200 1.00048 0.97419 1.48364 1.11938 1.65055 1.08004 1.19213 0.83938 0.77243 0.85472 1.90757 1.83667 1.54936 1.15306 1.23679 0.92276 1.03543 1.02279 0.81660 1.24464 0.99110 0.89580 1.02085 1.19842 0.78712 1.07970 0.76697 1.93038 1.37907 1.94220 1.88913 1.93065 1.93825 1.96326 1.30942 1.23055 1.01031 1.02715 0.77596 1.21310 0.90330 0.94749 0.86395 0.91769 1.42526 1.64588 1.28449 1.01797 1.18975 1.26622 1.06586 0.83113 0.92161 1.25417 1.02584 1.02388 0.94748 1.69888 1.53004 1.41507 0.99118 0.85519 0.78753 0.79929 0.78230 1.21114 1.23165 1.16532 1.23923 0.95267 0.95209 0.99275 1.77248 1.02354 1.09902 1.26160 0.90535 0.86532 0.88947 0.78226 0.90228 0.90642 0.84800 0.81657 0.90331 0.90986 0.79726 0.93621 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.47 127.77 1.47 2.83 16 2 N -0.38 -9.19 4.01 -369.55 -1.48 -10.68 16 3 C 0.06 1.44 11.40 83.54 0.95 2.39 16 4 C -0.23 -5.88 5.02 -20.15 -0.10 -5.98 16 5 C -0.01 -0.35 3.06 -10.14 -0.03 -0.38 16 6 H 0.10 2.26 8.00 -2.39 -0.02 2.24 16 7 C 0.12 2.99 6.35 86.86 0.55 3.55 16 8 N -0.60 -15.44 3.33 -811.79 -2.70 -18.14 16 9 C 0.55 15.18 7.63 87.66 0.67 15.85 16 10 O -0.57 -19.42 15.40 -3.02 -0.05 -19.46 16 11 C -0.20 -4.19 5.52 -11.54 -0.06 -4.25 16 12 H 0.17 2.96 7.74 -2.39 -0.02 2.95 16 13 C -0.11 -1.83 10.20 30.59 0.31 -1.52 16 14 C 0.20 4.70 5.19 30.59 0.16 4.86 16 15 F -0.16 -3.72 17.60 44.97 0.79 -2.93 16 16 F -0.16 -4.72 15.71 44.97 0.71 -4.02 16 17 C 0.08 2.20 6.03 86.73 0.52 2.72 16 18 C 0.18 5.63 3.04 46.18 0.14 5.77 16 19 H 0.06 2.17 7.66 -2.39 -0.02 2.15 16 20 N -0.73 -28.55 4.98 -317.33 -1.58 -30.13 16 21 C -0.22 -11.21 10.46 84.03 0.88 -10.33 16 22 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 23 C -0.06 -3.24 5.50 84.86 0.47 -2.78 16 24 N -0.98 -59.67 13.97 21.65 0.30 -59.36 16 25 Si 0.95 41.25 27.74 68.60 1.90 43.16 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.24 -8.98 6.52 99.48 0.65 -8.33 16 29 C 0.05 1.35 10.84 85.24 0.92 2.27 16 30 N -0.33 -9.90 12.58 -57.02 -0.72 -10.62 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.08 1.94 8.04 -2.39 -0.02 1.92 16 36 H 0.08 1.79 7.37 -2.39 -0.02 1.78 16 37 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.17 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 2.16 8.03 -2.39 -0.02 2.14 16 40 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 41 H 0.37 13.73 5.58 -92.71 -0.52 13.22 16 42 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.19 4.53 7.96 -2.91 -0.02 4.50 16 Total: -1.00 -74.60 371.33 4.50 -70.10 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.48 Total: 27.09 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.85 Total: 15.00 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -6.18 Total: -128.93 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.05 Total: -19.46 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 1.50 Total: -6.94 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.90 Total: 43.16 kcal Total: -74.60 4.50 -70.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086977635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.797 kcal (2) G-P(sol) polarization free energy of solvation -74.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds