Wall clock time and date at job start Sat Apr 11 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.28443 * 125.18951 * 2 1 4 4 C 1.30837 * 110.97979 * 179.97438 * 3 2 1 5 5 C 1.39799 * 107.87787 * 0.02562 * 4 3 2 6 6 Cl 1.73609 * 127.33643 * 179.97438 * 5 4 3 7 7 C 1.36749 * 125.18513 * 179.69287 * 2 1 3 8 8 C 1.47023 * 126.90627 * 0.02562 * 7 2 1 9 9 O 1.21642 * 120.00381 * 100.11749 * 8 7 2 10 10 N 1.34784 * 120.00146 * 280.11095 * 8 7 2 11 11 C 1.45340 * 120.34819 * 4.60148 * 10 8 7 12 12 C 1.53053 * 108.62184 * 223.24838 * 11 10 8 13 13 C 1.52880 * 109.24532 * 77.97562 * 12 11 10 14 14 C 1.53964 * 109.71409 * 287.12369 * 13 12 11 15 15 C 1.52445 * 110.73437 * 315.64673 * 14 13 12 16 16 C 1.53799 * 109.42370 * 113.73314 * 15 14 13 17 17 H 1.08993 * 109.57393 * 42.06525 * 16 15 14 18 18 N 1.46499 * 109.52305 * 162.22405 * 16 15 14 19 19 C 1.36934 * 119.99910 * 204.68069 * 18 16 15 20 20 H 1.08005 * 119.99993 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00091 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99868 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00000 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47285 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46630 * 120.00113 * 23 21 19 26 26 H 1.48499 * 109.47425 * 240.00318 * 23 21 19 27 27 C 1.46950 * 120.35582 * 184.86897 * 10 8 7 28 28 H 1.09000 * 109.47139 * 85.03711 * 1 2 3 29 29 H 1.08997 * 109.47374 * 205.04237 * 1 2 3 30 30 H 1.09003 * 109.47146 * 325.04004 * 1 2 3 31 31 H 1.07998 * 126.05301 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.68010 * 343.07101 * 11 10 8 33 33 H 1.08999 * 109.67849 * 103.61008 * 11 10 8 34 34 H 1.09005 * 109.55468 * 318.05526 * 12 11 10 35 35 H 1.09001 * 109.58476 * 197.91809 * 12 11 10 36 36 H 1.09000 * 109.43350 * 167.04616 * 13 12 11 37 37 H 1.08998 * 109.38914 * 47.16843 * 13 12 11 38 38 H 1.09004 * 109.22404 * 195.32241 * 14 13 12 39 39 H 1.09001 * 109.19156 * 75.94689 * 14 13 12 40 40 H 1.09000 * 109.47843 * 353.74039 * 15 14 13 41 41 H 1.09000 * 109.48037 * 233.71400 * 15 14 13 42 42 H 0.97003 * 120.00419 * 24.68390 * 18 16 15 43 43 H 0.97008 * 119.99686 * 179.97438 * 22 21 19 44 44 H 1.09004 * 109.53605 * 188.26239 * 27 10 8 45 45 H 1.08997 * 109.53668 * 308.42234 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4735 0.7285 0.0005 5 6 3.5629 -0.6666 0.0003 6 17 5.0078 -1.6290 0.0002 7 6 2.2530 -1.1176 0.0060 8 6 1.8009 -2.5166 0.0130 9 8 1.7903 -3.1576 -1.0208 10 7 1.3982 -3.0890 1.1649 11 6 1.3129 -2.3034 2.3847 12 6 1.8972 -3.1244 3.5366 13 6 3.4236 -3.0774 3.4654 14 6 3.9156 -3.9431 2.2910 15 6 3.1761 -5.2757 2.2560 16 6 2.3064 -5.3448 0.9894 17 1 2.8645 -4.9486 0.1411 18 7 1.9368 -6.7375 0.7247 19 6 1.6210 -7.1320 -0.5480 20 1 1.6448 -6.4166 -1.3567 21 6 1.2713 -8.4517 -0.7989 22 7 1.2428 -9.3237 0.1866 23 14 0.8398 -8.9898 -2.5349 24 1 0.9466 -7.8283 -3.4541 25 1 1.7794 -10.0538 -2.9712 26 1 -0.5490 -9.5150 -2.5597 27 6 1.0465 -4.5153 1.2021 28 1 -0.3633 0.0889 -1.0238 29 1 -0.3634 -0.9310 0.4350 30 1 -0.3633 0.8422 0.5889 31 1 4.3040 1.4189 0.0003 32 1 1.8808 -1.3805 2.2674 33 1 0.2700 -2.0685 2.5977 34 1 1.5612 -4.1582 3.4551 35 1 1.5647 -2.7080 4.4875 36 1 3.8420 -3.4584 4.3970 37 1 3.7474 -2.0473 3.3170 38 1 4.9838 -4.1282 2.4045 39 1 3.7409 -3.4110 1.3559 40 1 2.5416 -5.3626 3.1379 41 1 3.8984 -6.0920 2.2459 42 1 1.9157 -7.3802 1.4510 43 1 0.9980 -10.2459 0.0113 44 1 0.6097 -4.7579 2.1709 45 1 0.3272 -4.7341 0.4130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088315005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:12 Heat of formation + Delta-G solvation = 66.810763 kcal Electronic energy + Delta-G solvation = -29483.390817 eV Core-core repulsion = 25564.661417 eV Total energy + Delta-G solvation = -3918.729400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.83860 -40.19167 -37.54233 -36.64589 -35.07060 -33.97574 -33.56273 -32.14577 -31.04246 -29.69274 -27.66500 -27.29154 -26.31538 -24.22478 -23.11425 -22.21266 -21.87460 -20.77877 -19.86035 -19.07095 -17.84184 -17.02370 -16.75844 -16.26481 -15.95031 -15.67297 -15.15532 -14.81858 -14.48256 -14.19114 -13.78948 -13.72566 -13.64604 -13.37901 -13.13654 -13.09944 -12.83003 -12.63433 -12.30241 -11.98532 -11.90230 -11.71634 -11.54374 -11.09515 -10.97071 -10.83017 -10.79687 -10.51458 -10.41876 -10.24283 -10.15051 -9.98260 -9.70484 -9.57776 -9.43882 -9.02376 -8.87765 -8.37846 -6.93251 -5.72750 -3.01375 1.30687 1.65213 2.24505 2.33951 2.68465 3.09992 3.47797 3.54528 3.58746 4.17629 4.26812 4.60384 4.68841 4.74453 4.76981 4.89737 5.01786 5.03238 5.09611 5.18123 5.24975 5.31882 5.37621 5.55733 5.61758 5.72762 5.76467 5.83909 5.92523 5.97514 6.04485 6.08834 6.16794 6.33423 6.37126 6.44187 6.49580 6.64799 6.65535 6.86032 7.12526 7.44293 7.67058 7.85264 8.14382 8.46387 9.58152 10.12109 10.47708 11.49785 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.004137 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.886047 B = 6765.953181 C = 7236.216278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.270 5.270 3 N -0.276 5.276 4 C 0.023 3.977 5 C -0.119 4.119 6 Cl -0.014 7.014 7 C 0.003 3.997 8 C 0.579 3.421 9 O -0.495 6.495 10 N -0.588 5.588 11 C 0.105 3.895 12 C -0.149 4.149 13 C -0.113 4.113 14 C -0.122 4.122 15 C -0.130 4.130 16 C 0.165 3.835 17 H 0.061 0.939 18 N -0.718 5.718 19 C -0.233 4.233 20 H 0.075 0.925 21 C -0.013 4.013 22 N -0.935 5.935 23 Si 0.903 3.097 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.097 3.903 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.194 0.806 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.384 0.616 43 H 0.253 0.747 44 H 0.078 0.922 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.295 21.838 8.032 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.058 5.058 3 N -0.106 5.106 4 C -0.156 4.156 5 C -0.157 4.157 6 Cl 0.015 6.985 7 C -0.127 4.127 8 C 0.361 3.639 9 O -0.367 6.367 10 N -0.322 5.322 11 C -0.019 4.019 12 C -0.187 4.187 13 C -0.150 4.150 14 C -0.160 4.160 15 C -0.168 4.168 16 C 0.054 3.946 17 H 0.079 0.921 18 N -0.358 5.358 19 C -0.364 4.364 20 H 0.093 0.907 21 C -0.209 4.209 22 N -0.584 5.584 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.220 1.220 27 C -0.026 4.026 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.211 0.789 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.218 0.782 43 H 0.063 0.937 44 H 0.097 0.903 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.458 22.254 7.259 23.412 hybrid contribution 0.388 -1.219 -0.623 1.423 sum 0.846 21.035 6.636 22.073 Atomic orbital electron populations 1.22282 0.72313 1.05527 1.05252 1.45501 1.07599 1.01596 1.51136 1.73213 1.03256 1.13357 1.20799 1.23488 0.93876 0.92653 1.05538 1.21235 0.87546 0.92478 1.14423 1.98374 1.32899 1.70055 1.97167 1.21471 0.90906 0.89876 1.10474 1.16888 0.78927 0.83665 0.84383 1.90956 1.51423 1.62839 1.31490 1.47950 1.64930 1.11655 1.07665 1.21544 1.00394 0.94856 0.85063 1.22252 0.96742 1.02493 0.97166 1.21709 0.94727 0.99774 0.98836 1.21769 0.99050 0.96179 0.99021 1.22095 0.99279 0.96810 0.98658 1.20690 0.92098 0.86531 0.95325 0.92137 1.42402 1.81549 1.03723 1.08155 1.19400 1.37355 0.93576 0.86098 0.90694 1.24715 1.02660 0.96159 0.97325 1.69676 1.55451 1.03164 1.30106 0.86158 0.77559 0.78341 0.84517 1.20380 1.21920 1.21961 1.22800 1.01281 0.76131 1.02422 0.89092 0.88592 0.87934 0.78927 0.90713 0.91969 0.88949 0.91163 0.92179 0.92460 0.92888 0.91211 0.91849 0.91697 0.78240 0.93685 0.90348 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 11.22 59.85 0.67 1.33 16 2 N -0.27 -3.09 3.75 -63.85 -0.24 -3.33 16 3 N -0.28 -3.19 11.89 30.61 0.36 -2.82 16 4 C 0.02 0.25 12.04 -17.39 -0.21 0.04 16 5 C -0.12 -1.56 6.89 -38.88 -0.27 -1.83 16 6 Cl -0.01 -0.18 27.60 -51.86 -1.43 -1.61 16 7 C 0.00 0.04 4.65 -82.00 -0.38 -0.34 16 8 C 0.58 9.40 5.17 -12.70 -0.07 9.33 16 9 O -0.50 -10.42 16.05 5.24 0.08 -10.34 16 10 N -0.59 -8.37 1.69 -176.03 -0.30 -8.66 16 11 C 0.11 1.11 5.89 -4.64 -0.03 1.09 16 12 C -0.15 -1.52 5.45 -26.77 -0.15 -1.67 16 13 C -0.11 -1.25 5.75 -26.29 -0.15 -1.40 16 14 C -0.12 -1.72 5.40 -26.51 -0.14 -1.86 16 15 C -0.13 -2.14 4.97 -26.60 -0.13 -2.27 16 16 C 0.16 3.30 2.40 -67.85 -0.16 3.13 16 17 H 0.06 1.40 6.30 -51.93 -0.33 1.07 16 18 N -0.72 -17.89 5.12 -53.35 -0.27 -18.16 16 19 C -0.23 -6.60 9.90 -15.06 -0.15 -6.75 16 20 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.94 -28.22 13.06 55.49 0.72 -27.50 16 23 Si 0.90 23.07 29.55 -169.99 -5.02 18.05 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 27 C 0.10 1.68 4.75 -4.13 -0.02 1.66 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.71 7.65 -51.93 -0.40 0.31 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.07 0.79 6.09 -51.93 -0.32 0.47 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.08 3.35 -51.93 -0.17 0.91 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.60 7.85 -51.93 -0.41 0.20 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.07 3.65 -51.93 -0.19 0.88 16 40 H 0.06 0.94 5.47 -51.93 -0.28 0.66 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 43 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.08 1.20 6.07 -51.93 -0.32 0.89 16 45 H 0.08 1.63 8.02 -51.93 -0.42 1.21 16 LS Contribution 363.48 15.07 5.48 5.48 Total: -1.00 -33.71 363.48 -7.97 -41.68 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.07 Total: 7.22 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.28 Total: 0.00 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.28 Total: -60.47 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.43 Total: -1.61 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.71 -7.97 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088315005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.494 kcal (2) G-P(sol) polarization free energy of solvation -33.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds