Wall clock time and date at job start Sat Apr 11 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35643 * 124.93049 * 2 1 4 4 C 1.35466 * 107.12863 * 179.74170 * 3 2 1 5 5 Cl 1.73603 * 127.23755 * 180.30251 * 4 3 2 6 6 C 1.41542 * 105.52647 * 0.26143 * 4 3 2 7 7 C 1.47663 * 126.46304 * 179.97438 * 6 4 3 8 8 O 1.21569 * 120.00033 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99977 * 180.02562 * 7 6 4 10 10 C 1.46972 * 120.36537 * 359.72098 * 9 7 6 11 11 C 1.51792 * 109.40021 * 291.90419 * 10 9 7 12 12 C 1.53812 * 109.05634 * 287.19118 * 11 10 9 13 13 C 1.52442 * 109.40397 * 77.78984 * 12 11 10 14 14 C 1.53957 * 110.73076 * 246.27288 * 13 12 11 15 15 C 1.52877 * 109.72962 * 44.36622 * 14 13 12 16 16 H 1.09003 * 109.48865 * 312.92459 * 15 14 13 17 17 N 1.46501 * 109.48544 * 192.87178 * 15 14 13 18 18 C 1.36939 * 119.99971 * 155.08772 * 17 15 14 19 19 H 1.07995 * 120.00168 * 359.97438 * 18 17 15 20 20 C 1.38808 * 119.99729 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00356 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00260 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46795 * 59.99463 * 22 20 18 24 24 H 1.48492 * 109.47680 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46692 * 300.00030 * 22 20 18 26 26 C 1.45334 * 120.36627 * 180.02562 * 9 7 6 27 27 N 1.28472 * 124.93682 * 180.22192 * 2 1 3 28 28 H 1.09002 * 109.47513 * 89.99982 * 1 2 3 29 29 H 1.09002 * 109.47155 * 209.99805 * 1 2 3 30 30 H 1.09000 * 109.47377 * 329.99143 * 1 2 3 31 31 H 1.08002 * 126.43840 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.53091 * 51.52886 * 10 9 7 33 33 H 1.08998 * 109.53046 * 171.75206 * 10 9 7 34 34 H 1.09003 * 109.61178 * 167.29634 * 11 10 9 35 35 H 1.08997 * 109.59104 * 47.07182 * 11 10 9 36 36 H 1.08995 * 109.47501 * 317.80997 * 12 11 10 37 37 H 1.08996 * 109.49083 * 197.77775 * 12 11 10 38 38 H 1.08991 * 109.22359 * 125.94786 * 13 12 11 39 39 H 1.09002 * 109.18791 * 6.57360 * 13 12 11 40 40 H 1.08996 * 109.42814 * 284.28558 * 14 13 12 41 41 H 1.09000 * 109.42651 * 164.44511 * 14 13 12 42 42 H 0.97002 * 119.99820 * 335.08416 * 17 15 14 43 43 H 0.96993 * 120.00196 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.67614 * 256.38435 * 26 9 7 45 45 H 1.08993 * 109.67409 * 16.88971 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2417 1.1121 0.0000 4 6 3.5314 0.6979 0.0058 5 17 4.9542 1.6927 0.0158 6 6 3.4753 -0.7164 0.0031 7 6 4.6270 -1.6404 0.0068 8 8 5.7600 -1.1996 0.0133 9 7 4.4223 -2.9725 0.0029 10 6 3.0561 -3.5142 0.0012 11 6 2.3903 -3.2073 1.3304 12 6 3.0021 -4.1067 2.4179 13 6 4.3602 -3.5504 2.8303 14 6 5.4898 -4.5152 2.4260 15 6 5.2535 -5.0187 1.0020 16 1 4.2156 -5.3340 0.8953 17 7 6.1396 -6.1536 0.7316 18 6 5.7971 -7.0786 -0.2183 19 1 4.8735 -6.9717 -0.7677 20 6 6.6364 -8.1541 -0.4740 21 7 7.7618 -8.2847 0.1960 22 14 6.1696 -9.4157 -1.7702 23 1 6.0345 -8.7446 -3.0880 24 1 7.2257 -10.4564 -1.8512 25 1 4.8775 -10.0485 -1.4022 26 6 5.5501 -3.8892 0.0071 27 7 2.2007 -1.0532 -0.0041 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 1.8966 2.1355 0.0004 32 1 2.4818 -3.0521 -0.8018 33 1 3.0920 -4.5932 -0.1493 34 1 1.3202 -3.4011 1.2570 35 1 2.5542 -2.1611 1.5883 36 1 3.1263 -5.1165 2.0269 37 1 2.3410 -4.1310 3.2841 38 1 4.3775 -3.4103 3.9110 39 1 4.5170 -2.5890 2.3412 40 1 5.5062 -5.3620 3.1119 41 1 6.4458 -3.9936 2.4721 42 1 6.9690 -6.2497 1.2254 43 1 8.3484 -9.0360 0.0170 44 1 5.6878 -4.3061 -0.9906 45 1 6.4526 -3.3592 0.3112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088320394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:20 Heat of formation + Delta-G solvation = 81.327780 kcal Electronic energy + Delta-G solvation = -28974.490316 eV Core-core repulsion = 25056.390421 eV Total energy + Delta-G solvation = -3918.099895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.96415 -39.96592 -37.46439 -36.53686 -34.88862 -33.72349 -33.55977 -32.19140 -30.84733 -29.82585 -28.21360 -26.81267 -25.97331 -24.12114 -22.79780 -22.13544 -21.82503 -21.22090 -19.54256 -18.57832 -17.65517 -17.13516 -16.70295 -16.44438 -15.99281 -15.49807 -14.83745 -14.54240 -14.28093 -14.07039 -14.03908 -13.69037 -13.57684 -13.29271 -13.20490 -13.08371 -12.72761 -12.34123 -12.32017 -12.00072 -11.65415 -11.39160 -11.21945 -11.19099 -10.84229 -10.77182 -10.63680 -10.51331 -10.37143 -10.17941 -10.14083 -9.78324 -9.65926 -9.59020 -9.30714 -8.96787 -8.89807 -8.08627 -6.94894 -5.75521 -3.04903 1.39710 1.71345 1.73990 2.51305 3.32481 3.45040 3.49457 3.50368 3.51353 4.10584 4.37810 4.55832 4.60365 4.62122 4.89599 4.96135 5.02826 5.14902 5.20699 5.26930 5.50214 5.54041 5.62953 5.70086 5.75309 5.84071 5.93319 6.02529 6.06757 6.15426 6.21340 6.27765 6.39411 6.41605 6.45784 6.57539 6.67380 6.75633 6.88871 6.91542 7.17319 7.53023 7.69351 7.77627 8.42307 8.48882 9.53804 10.11071 10.45929 11.46771 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.003313 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.972653 B = 8449.260898 C = 8857.824673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.287 5.287 3 C -0.009 4.009 4 C -0.103 4.103 5 Cl -0.011 7.011 6 C 0.003 3.997 7 C 0.590 3.410 8 O -0.524 6.524 9 N -0.582 5.582 10 C 0.111 3.889 11 C -0.124 4.124 12 C -0.131 4.131 13 C -0.113 4.113 14 C -0.123 4.123 15 C 0.159 3.841 16 H 0.066 0.934 17 N -0.719 5.719 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.010 4.010 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.089 3.911 27 N -0.232 5.232 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.188 0.812 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.069 0.931 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.401 20.259 2.191 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.076 5.076 3 C -0.152 4.152 4 C -0.140 4.140 5 Cl 0.018 6.982 6 C -0.157 4.157 7 C 0.375 3.625 8 O -0.399 6.399 9 N -0.314 5.314 10 C -0.011 4.011 11 C -0.162 4.162 12 C -0.168 4.168 13 C -0.151 4.151 14 C -0.161 4.161 15 C 0.048 3.952 16 H 0.084 0.916 17 N -0.360 5.360 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.035 4.035 27 N -0.068 5.068 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.205 0.795 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.559 19.492 2.055 26.992 hybrid contribution 0.548 0.130 -0.621 0.838 sum -18.012 19.622 1.434 26.674 Atomic orbital electron populations 1.22218 0.72473 1.05706 1.04697 1.45527 1.07934 1.02950 1.51144 1.22571 0.89415 0.94182 1.09043 1.20840 0.89281 0.91256 1.12629 1.98366 1.35773 1.66980 1.97110 1.22030 0.91428 0.92435 1.09845 1.16791 0.86244 0.81658 0.77822 1.90821 1.22019 1.76527 1.50531 1.47735 1.08255 1.04681 1.70723 1.21582 0.81572 1.00073 0.97918 1.22038 0.98969 1.00233 0.94979 1.21917 0.96232 1.00497 0.98155 1.21628 0.94599 0.99280 0.99574 1.22004 0.97854 0.98557 0.97674 1.20911 0.95911 0.87257 0.91121 0.91621 1.42413 1.23923 1.23966 1.45654 1.19163 1.03722 1.01689 1.12765 0.91255 1.24740 0.96922 0.99031 0.99961 1.69652 1.12293 1.32070 1.43789 0.86296 0.77224 0.81259 0.81555 1.21259 1.21716 1.21269 1.22660 0.88254 0.90688 1.01919 1.74148 1.02191 1.12483 1.17968 0.89472 0.88134 0.88521 0.79464 0.90801 0.89247 0.91702 0.91023 0.90399 0.92927 0.93226 0.92389 0.91793 0.92406 0.78106 0.93411 0.91267 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 11.32 59.85 0.68 0.95 16 2 N -0.29 -2.37 3.72 -67.94 -0.25 -2.63 16 3 C -0.01 -0.07 11.49 -16.86 -0.19 -0.27 16 4 C -0.10 -1.30 6.80 -39.31 -0.27 -1.56 16 5 Cl -0.01 -0.14 28.17 -51.86 -1.46 -1.60 16 6 C 0.00 0.05 6.05 -82.76 -0.50 -0.45 16 7 C 0.59 10.29 6.25 -12.41 -0.08 10.22 16 8 O -0.52 -10.66 15.31 5.31 0.08 -10.58 16 9 N -0.58 -9.74 1.70 -175.89 -0.30 -10.04 16 10 C 0.11 1.56 4.85 -4.40 -0.02 1.54 16 11 C -0.12 -1.52 4.44 -26.92 -0.12 -1.64 16 12 C -0.13 -1.76 5.49 -26.59 -0.15 -1.91 16 13 C -0.11 -1.71 5.41 -26.52 -0.14 -1.85 16 14 C -0.12 -2.18 5.22 -26.30 -0.14 -2.32 16 15 C 0.16 3.14 2.29 -67.78 -0.16 2.98 16 16 H 0.07 1.27 3.29 -51.93 -0.17 1.10 16 17 N -0.72 -17.83 5.13 -53.28 -0.27 -18.11 16 18 C -0.24 -6.58 9.88 -15.06 -0.15 -6.73 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 21 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 22 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.09 1.75 5.60 -4.45 -0.02 1.72 16 27 N -0.23 -2.69 6.51 33.42 0.22 -2.47 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.10 0.05 8.13 -51.93 -0.42 -0.38 16 31 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.07 0.98 6.69 -51.93 -0.35 0.63 16 33 H 0.09 1.33 6.06 -51.93 -0.31 1.01 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.94 4.72 -51.93 -0.25 0.70 16 36 H 0.08 1.17 5.47 -51.93 -0.28 0.88 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.95 5.37 -51.93 -0.28 0.67 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 42 H 0.39 10.29 7.80 -40.82 -0.32 9.97 16 43 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 45 H 0.08 1.72 6.79 -51.93 -0.35 1.37 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -33.58 358.38 -8.31 -41.89 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -6.07 Total: 7.92 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.35 Total: 0.30 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.12 Total: -60.52 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.46 Total: -1.60 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.58 -8.31 -41.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088320394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.219 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds