Wall clock time and date at job start Sat Apr 11 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35643 * 124.93049 * 2 1 4 4 C 1.35466 * 107.12863 * 179.74170 * 3 2 1 5 5 Cl 1.73603 * 127.23755 * 180.30251 * 4 3 2 6 6 C 1.41542 * 105.52647 * 0.26143 * 4 3 2 7 7 C 1.47663 * 126.46304 * 179.97438 * 6 4 3 8 8 O 1.21569 * 120.00033 * 0.02562 * 7 6 4 9 9 N 1.34776 * 119.99977 * 180.02562 * 7 6 4 10 10 C 1.46972 * 120.36537 * 359.72098 * 9 7 6 11 11 C 1.51792 * 109.40021 * 291.90419 * 10 9 7 12 12 C 1.53812 * 109.05634 * 287.19118 * 11 10 9 13 13 C 1.52442 * 109.40397 * 77.78984 * 12 11 10 14 14 C 1.53957 * 110.73076 * 246.27288 * 13 12 11 15 15 C 1.52877 * 109.72962 * 44.36622 * 14 13 12 16 16 H 1.09003 * 109.48865 * 312.92459 * 15 14 13 17 17 N 1.46501 * 109.48544 * 192.87178 * 15 14 13 18 18 C 1.36939 * 119.99971 * 155.08772 * 17 15 14 19 19 H 1.07995 * 120.00168 * 359.97438 * 18 17 15 20 20 C 1.38808 * 119.99729 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00356 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00260 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46795 * 59.99463 * 22 20 18 24 24 H 1.48492 * 109.47680 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46692 * 300.00030 * 22 20 18 26 26 C 1.45334 * 120.36627 * 180.02562 * 9 7 6 27 27 N 1.28472 * 124.93682 * 180.22192 * 2 1 3 28 28 H 1.09002 * 109.47513 * 89.99982 * 1 2 3 29 29 H 1.09002 * 109.47155 * 209.99805 * 1 2 3 30 30 H 1.09000 * 109.47377 * 329.99143 * 1 2 3 31 31 H 1.08002 * 126.43840 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.53091 * 51.52886 * 10 9 7 33 33 H 1.08998 * 109.53046 * 171.75206 * 10 9 7 34 34 H 1.09003 * 109.61178 * 167.29634 * 11 10 9 35 35 H 1.08997 * 109.59104 * 47.07182 * 11 10 9 36 36 H 1.08995 * 109.47501 * 317.80997 * 12 11 10 37 37 H 1.08996 * 109.49083 * 197.77775 * 12 11 10 38 38 H 1.08991 * 109.22359 * 125.94786 * 13 12 11 39 39 H 1.09002 * 109.18791 * 6.57360 * 13 12 11 40 40 H 1.08996 * 109.42814 * 284.28558 * 14 13 12 41 41 H 1.09000 * 109.42651 * 164.44511 * 14 13 12 42 42 H 0.97002 * 119.99820 * 335.08416 * 17 15 14 43 43 H 0.96993 * 120.00196 * 180.02562 * 21 20 18 44 44 H 1.09005 * 109.67614 * 256.38435 * 26 9 7 45 45 H 1.08993 * 109.67409 * 16.88971 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2417 1.1121 0.0000 4 6 3.5314 0.6979 0.0058 5 17 4.9542 1.6927 0.0158 6 6 3.4753 -0.7164 0.0031 7 6 4.6270 -1.6404 0.0068 8 8 5.7600 -1.1996 0.0133 9 7 4.4223 -2.9725 0.0029 10 6 3.0561 -3.5142 0.0012 11 6 2.3903 -3.2073 1.3304 12 6 3.0021 -4.1067 2.4179 13 6 4.3602 -3.5504 2.8303 14 6 5.4898 -4.5152 2.4260 15 6 5.2535 -5.0187 1.0020 16 1 4.2156 -5.3340 0.8953 17 7 6.1396 -6.1536 0.7316 18 6 5.7971 -7.0786 -0.2183 19 1 4.8735 -6.9717 -0.7677 20 6 6.6364 -8.1541 -0.4740 21 7 7.7618 -8.2847 0.1960 22 14 6.1696 -9.4157 -1.7702 23 1 6.0345 -8.7446 -3.0880 24 1 7.2257 -10.4564 -1.8512 25 1 4.8775 -10.0485 -1.4022 26 6 5.5501 -3.8892 0.0071 27 7 2.2007 -1.0532 -0.0041 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 1.8966 2.1355 0.0004 32 1 2.4818 -3.0521 -0.8018 33 1 3.0920 -4.5932 -0.1493 34 1 1.3202 -3.4011 1.2570 35 1 2.5542 -2.1611 1.5883 36 1 3.1263 -5.1165 2.0269 37 1 2.3410 -4.1310 3.2841 38 1 4.3775 -3.4103 3.9110 39 1 4.5170 -2.5890 2.3412 40 1 5.5062 -5.3620 3.1119 41 1 6.4458 -3.9936 2.4721 42 1 6.9690 -6.2497 1.2254 43 1 8.3484 -9.0360 0.0170 44 1 5.6878 -4.3061 -0.9906 45 1 6.4526 -3.3592 0.3112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088320394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:20 Heat of formation + Delta-G solvation = 60.022875 kcal Electronic energy + Delta-G solvation = -28975.414166 eV Core-core repulsion = 25056.390421 eV Total energy + Delta-G solvation = -3919.023745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.77482 -41.30004 -38.87211 -37.46960 -36.51904 -35.08626 -34.43117 -33.80331 -31.82868 -31.41046 -29.23934 -28.09518 -27.21803 -25.78691 -24.21282 -23.23031 -22.82363 -22.35442 -20.80546 -19.84208 -19.19033 -18.53297 -17.81674 -17.29548 -17.23755 -16.93890 -16.32154 -15.72774 -15.51692 -15.39064 -15.14446 -15.06803 -14.92940 -14.59288 -14.17313 -13.99550 -13.76675 -13.64278 -13.42705 -13.05531 -12.97917 -12.90683 -12.79292 -12.63219 -12.34529 -12.26279 -12.17130 -11.88468 -11.76211 -11.57516 -11.51082 -11.41023 -11.16602 -11.02362 -10.82855 -10.16038 -9.83331 -9.50502 -8.98201 -7.92177 -5.22078 0.44209 0.89472 1.00927 1.48332 1.51719 1.57387 1.72521 2.11274 2.28392 2.58390 3.29561 3.41046 3.67641 3.77608 3.83298 3.95529 4.05412 4.12950 4.24221 4.32413 4.38263 4.40323 4.50159 4.52470 4.56187 4.65317 4.71736 4.78667 4.80613 4.87816 4.91770 4.99357 5.03159 5.21846 5.22920 5.32076 5.40457 5.42862 5.47835 5.57159 5.72898 5.76081 6.28367 6.43339 6.72290 7.16758 7.34691 8.07954 8.32611 9.31195 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016033 B = 0.003313 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.972653 B = 8449.260898 C = 8857.824673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.271 5.271 3 C 0.021 3.979 4 C -0.134 4.134 5 Cl -0.029 7.029 6 C -0.032 4.032 7 C 0.586 3.414 8 O -0.567 6.567 9 N -0.582 5.582 10 C 0.111 3.889 11 C -0.112 4.112 12 C -0.128 4.128 13 C -0.104 4.104 14 C -0.116 4.116 15 C 0.163 3.837 16 H 0.079 0.921 17 N -0.732 5.732 18 C -0.239 4.239 19 H 0.080 0.920 20 C -0.074 4.074 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.280 1.280 24 H -0.299 1.299 25 H -0.273 1.273 26 C 0.107 3.893 27 N -0.229 5.229 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.233 0.767 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.043 0.957 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 21.750 2.206 31.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.059 5.059 3 C -0.124 4.124 4 C -0.171 4.171 5 Cl -0.001 7.001 6 C -0.190 4.190 7 C 0.373 3.627 8 O -0.445 6.445 9 N -0.314 5.314 10 C -0.011 4.011 11 C -0.150 4.150 12 C -0.165 4.165 13 C -0.143 4.143 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.097 0.903 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.098 0.902 20 C -0.266 4.266 21 N -0.621 5.621 22 Si 0.801 3.199 23 H -0.207 1.207 24 H -0.225 1.225 25 H -0.199 1.199 26 C -0.019 4.019 27 N -0.068 5.068 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.250 0.750 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.281 21.007 2.068 31.426 hybrid contribution 1.827 -0.198 -0.617 1.938 sum -21.454 20.809 1.450 29.923 Atomic orbital electron populations 1.22781 0.68972 1.07939 1.06560 1.46119 1.09617 1.02076 1.48129 1.23157 0.87675 0.95897 1.05628 1.21092 0.90349 0.90617 1.15062 1.98351 1.37265 1.67143 1.97313 1.21516 0.91465 0.92548 1.13474 1.17251 0.86915 0.81871 0.76631 1.90781 1.24075 1.77250 1.52359 1.47702 1.08432 1.04431 1.70808 1.21760 0.80179 0.99366 0.99784 1.21964 1.00353 0.99652 0.93038 1.21895 0.95478 0.99579 0.99537 1.21576 0.94606 0.97679 1.00407 1.21911 0.98561 0.98826 0.96172 1.21057 0.95471 0.85837 0.92264 0.90326 1.42619 1.24084 1.25206 1.45216 1.19574 1.03610 1.01551 1.12322 0.90249 1.25561 0.97172 1.01410 1.02477 1.69825 1.13628 1.32745 1.45876 0.85240 0.77010 0.78583 0.79101 1.20661 1.22496 1.19864 1.22121 0.88861 0.90880 1.00069 1.74030 1.01176 1.13797 1.17766 0.87726 0.87327 0.85036 0.75038 0.89524 0.90202 0.88530 0.91283 0.91904 0.90428 0.91650 0.93685 0.92310 0.93934 0.79713 0.94101 0.93876 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.04 11.32 127.77 1.45 1.49 16 2 N -0.27 -3.28 3.72 -368.86 -1.37 -4.65 16 3 C 0.02 0.27 11.49 83.46 0.96 1.23 16 4 C -0.13 -3.18 6.80 22.44 0.15 -3.02 16 5 Cl -0.03 -0.77 28.17 -2.72 -0.08 -0.85 16 6 C -0.03 -0.89 6.05 42.45 0.26 -0.63 16 7 C 0.59 21.00 6.25 86.73 0.54 21.54 16 8 O -0.57 -24.40 15.31 -3.93 -0.06 -24.46 16 9 N -0.58 -19.90 1.70 -828.65 -1.41 -21.31 16 10 C 0.11 2.97 4.85 85.89 0.42 3.39 16 11 C -0.11 -2.44 4.44 30.47 0.14 -2.30 16 12 C -0.13 -3.15 5.49 30.68 0.17 -2.98 16 13 C -0.10 -3.10 5.41 30.73 0.17 -2.93 16 14 C -0.12 -4.26 5.22 30.88 0.16 -4.10 16 15 C 0.16 6.64 2.29 45.09 0.10 6.74 16 16 H 0.08 3.05 3.29 -2.39 -0.01 3.04 16 17 N -0.73 -37.71 5.13 -322.48 -1.65 -39.36 16 18 C -0.24 -13.20 9.88 84.03 0.83 -12.37 16 19 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 20 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 21 N -0.97 -60.32 13.06 21.65 0.28 -60.03 16 22 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 C 0.11 4.40 5.60 86.74 0.49 4.89 16 27 N -0.23 -4.65 6.51 -48.17 -0.31 -4.96 16 28 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.13 -0.74 8.13 -2.39 -0.02 -0.76 16 31 H 0.23 0.81 8.06 -2.91 -0.02 0.78 16 32 H 0.09 2.12 6.69 -2.39 -0.02 2.10 16 33 H 0.08 2.29 6.06 -2.39 -0.01 2.27 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.62 4.72 -2.39 -0.01 1.61 16 36 H 0.06 1.77 5.47 -2.39 -0.01 1.76 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.04 1.47 5.37 -2.39 -0.01 1.46 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.04 1.66 7.87 -2.39 -0.02 1.64 16 42 H 0.37 20.88 7.80 -92.71 -0.72 20.16 16 43 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.04 1.97 8.09 -2.38 -0.02 1.95 16 45 H 0.06 2.64 6.79 -2.39 -0.02 2.62 16 Total: -1.00 -77.93 358.38 4.04 -73.90 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.32 Total: 26.30 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: 6.29 Total: 7.14 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -4.46 Total: -130.31 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.06 Total: -24.46 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -77.93 4.04 -73.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088320394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.919 kcal (2) G-P(sol) polarization free energy of solvation -77.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds