Wall clock time and date at job start Sat Apr 11 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39919 * 125.74900 * 2 1 4 4 C 1.30415 * 108.95508 * 179.87338 * 3 2 1 5 5 C 1.41339 * 108.05272 * 0.38153 * 4 3 2 6 6 C 1.47298 * 126.43624 * 179.77763 * 5 4 3 7 7 O 1.21614 * 120.00048 * 131.43570 * 6 5 4 8 8 N 1.34781 * 119.99980 * 311.43151 * 6 5 4 9 9 C 1.46964 * 120.36563 * 4.14319 * 8 6 5 10 10 C 1.51800 * 109.39746 * 291.89820 * 9 8 6 11 11 C 1.53795 * 109.05875 * 287.19240 * 10 9 8 12 12 C 1.52439 * 109.40504 * 77.78934 * 11 10 9 13 13 C 1.53956 * 110.73515 * 246.27378 * 12 11 10 14 14 C 1.52879 * 109.72918 * 44.36463 * 13 12 11 15 15 H 1.09003 * 109.48191 * 312.92258 * 14 13 12 16 16 N 1.46499 * 109.48407 * 192.87317 * 14 13 12 17 17 C 1.36941 * 119.99658 * 155.08574 * 16 14 13 18 18 H 1.07997 * 120.00432 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99724 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00066 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47426 * 89.99960 * 21 19 17 23 23 H 1.48499 * 109.47585 * 210.00156 * 21 19 17 24 24 H 1.48507 * 109.47114 * 330.00023 * 21 19 17 25 25 C 1.45333 * 120.36412 * 184.41504 * 8 6 5 26 26 C 1.34354 * 125.74586 * 180.30792 * 2 1 3 27 27 Cl 1.73596 * 126.32044 * 359.97438 * 26 2 1 28 28 H 1.09004 * 109.47032 * 269.68861 * 1 2 3 29 29 H 1.09008 * 109.47116 * 149.69399 * 1 2 3 30 30 H 1.08993 * 109.47039 * 29.69071 * 1 2 3 31 31 H 1.08005 * 125.97284 * 180.14199 * 4 3 2 32 32 H 1.09000 * 109.53167 * 51.52654 * 9 8 6 33 33 H 1.08997 * 109.53155 * 171.75059 * 9 8 6 34 34 H 1.08998 * 109.60953 * 167.29479 * 10 9 8 35 35 H 1.09001 * 109.58814 * 47.07521 * 10 9 8 36 36 H 1.09005 * 109.48448 * 317.81140 * 11 10 9 37 37 H 1.08999 * 109.49630 * 197.77748 * 11 10 9 38 38 H 1.09003 * 109.22459 * 125.94850 * 12 11 10 39 39 H 1.09009 * 109.19214 * 6.57660 * 12 11 10 40 40 H 1.08996 * 109.42292 * 284.28881 * 13 12 11 41 41 H 1.08997 * 109.42650 * 164.44289 * 13 12 11 42 42 H 0.96995 * 120.00323 * 335.08523 * 16 14 13 43 43 H 0.96999 * 119.99611 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.68195 * 256.39222 * 25 8 6 45 45 H 1.09007 * 109.67223 * 16.89692 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5310 0.7588 0.0027 5 6 3.5621 -0.6543 -0.0043 6 6 4.7660 -1.5028 -0.0088 7 8 4.8617 -2.4268 0.7762 8 7 5.7617 -1.2554 -0.8829 9 6 5.6958 -0.0877 -1.7729 10 6 4.5799 -0.2859 -2.7827 11 6 5.0144 -1.3447 -3.8101 12 6 4.8724 -2.7332 -3.1973 13 6 6.2513 -3.3949 -3.0212 14 6 7.2387 -2.3833 -2.4391 15 1 7.1610 -1.4435 -2.9858 16 7 8.6018 -2.9068 -2.5578 17 6 9.6652 -2.0450 -2.5966 18 1 9.4992 -0.9794 -2.5393 19 6 10.9569 -2.5411 -2.7086 20 7 11.1593 -3.8399 -2.7780 21 14 12.4076 -1.3657 -2.7608 22 1 12.8903 -1.1134 -1.3793 23 1 13.5020 -1.9654 -3.5657 24 1 11.9839 -0.0836 -3.3790 25 6 6.9095 -2.1435 -0.9597 26 6 2.2499 -1.0904 -0.0059 27 17 1.7154 -2.7420 -0.0141 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3634 -0.8873 -0.5186 30 1 -0.3633 0.8927 -0.5090 31 1 4.3909 1.4123 0.0056 32 1 5.4921 0.8074 -1.1852 33 1 6.6456 0.0263 -2.2953 34 1 4.3772 0.6555 -3.2933 35 1 3.6791 -0.6236 -2.2703 36 1 6.0543 -1.1751 -4.0892 37 1 4.3837 -1.2721 -4.6961 38 1 4.2578 -3.3527 -3.8504 39 1 4.3885 -2.6477 -2.2242 40 1 6.6141 -3.7397 -3.9895 41 1 6.1619 -4.2448 -2.3447 42 1 8.7510 -3.8639 -2.6090 43 1 12.0618 -4.1865 -2.8567 44 1 7.7638 -1.6831 -0.4636 45 1 6.6725 -3.0920 -0.4776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088336384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:26 Heat of formation + Delta-G solvation = 66.579600 kcal Electronic energy + Delta-G solvation = -28997.164163 eV Core-core repulsion = 25078.424739 eV Total energy + Delta-G solvation = -3918.739424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.79939 -39.87613 -37.45306 -37.16460 -34.93471 -33.83096 -33.61848 -32.22788 -30.45838 -29.89885 -27.90116 -26.87022 -25.96434 -24.13542 -22.82709 -22.00941 -21.51975 -21.36637 -19.63349 -18.75129 -17.53607 -17.17977 -16.55036 -16.17047 -16.05260 -15.51997 -14.95429 -14.68516 -14.34134 -14.09322 -13.90183 -13.61349 -13.60025 -13.30088 -13.20447 -13.09198 -12.72087 -12.39004 -12.32358 -12.21916 -11.95340 -11.50372 -11.41338 -11.28485 -11.08526 -10.87249 -10.80278 -10.63984 -10.41172 -10.24730 -10.16235 -9.77604 -9.74435 -9.66576 -9.58787 -8.96590 -8.79835 -8.13088 -6.97485 -5.78016 -3.07496 1.06171 1.14778 2.00290 2.22035 3.02587 3.41333 3.43825 3.48212 3.49816 4.05559 4.57177 4.57979 4.68631 4.72735 4.89296 4.94135 5.01487 5.08652 5.13246 5.19612 5.44177 5.45828 5.55102 5.64308 5.73684 5.80563 5.90716 5.98892 6.01580 6.07924 6.13218 6.18298 6.19176 6.36521 6.40051 6.51557 6.60164 6.70881 6.84896 6.86724 7.09919 7.14300 7.67243 7.73694 8.39747 8.47821 9.51379 10.08454 10.42976 11.44278 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.003258 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.240744 B = 8593.167569 C = 8866.398938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.357 5.357 3 N -0.273 5.273 4 C 0.088 3.912 5 C -0.246 4.246 6 C 0.587 3.413 7 O -0.534 6.534 8 N -0.588 5.588 9 C 0.103 3.897 10 C -0.139 4.139 11 C -0.126 4.126 12 C -0.113 4.113 13 C -0.123 4.123 14 C 0.158 3.842 15 H 0.066 0.934 16 N -0.719 5.719 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.930 5.930 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.091 3.909 26 C 0.164 3.836 27 Cl 0.018 6.982 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.200 0.800 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.069 0.931 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.537 8.591 2.121 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.140 5.140 3 N -0.094 5.094 4 C -0.099 4.099 5 C -0.263 4.263 6 C 0.374 3.626 7 O -0.411 6.411 8 N -0.320 5.320 9 C -0.020 4.020 10 C -0.177 4.177 11 C -0.163 4.163 12 C -0.151 4.151 13 C -0.161 4.161 14 C 0.048 3.952 15 H 0.083 0.917 16 N -0.360 5.360 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.034 4.034 26 C 0.007 3.993 27 Cl 0.046 6.954 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.216 0.784 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -24.323 9.059 2.507 26.077 hybrid contribution 1.285 -0.522 0.013 1.387 sum -23.038 8.538 2.519 24.698 Atomic orbital electron populations 1.22057 0.73197 1.05281 1.04277 1.48437 1.07275 1.02226 1.56062 1.77316 1.01881 1.05345 1.24859 1.24076 0.95326 0.93192 0.97291 1.19960 0.91977 0.94244 1.20078 1.17047 0.81632 0.83293 0.80678 1.90794 1.79893 1.31503 1.38933 1.47694 1.20906 1.27102 1.36279 1.21650 1.00714 0.87548 0.92047 1.22096 0.98714 0.99536 0.97330 1.21818 1.02490 0.94667 0.97304 1.21637 0.97424 0.95651 1.00417 1.22006 0.94353 0.98530 1.01225 1.20913 0.85690 0.96680 0.91935 0.91669 1.42418 0.99470 1.06744 1.87343 1.19201 0.85629 0.89662 1.42800 0.91172 1.24749 0.97424 0.95788 1.02745 1.69666 1.20598 1.10619 1.56868 0.86222 0.82755 0.79899 0.77472 1.21704 1.21832 1.20737 1.22637 0.85834 0.93811 1.01117 1.21901 0.90527 0.83797 1.03091 1.98448 1.90035 1.10390 1.96507 0.89852 0.89072 0.88245 0.78353 0.91682 0.88506 0.91356 0.91539 0.90190 0.92742 0.93188 0.92219 0.91780 0.92442 0.78117 0.93458 0.91315 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 11.28 59.85 0.67 1.19 16 2 N -0.36 -3.57 3.98 -64.32 -0.26 -3.83 16 3 N -0.27 -3.00 12.49 30.87 0.39 -2.61 16 4 C 0.09 0.96 9.89 -16.97 -0.17 0.79 16 5 C -0.25 -3.23 3.50 -105.02 -0.37 -3.60 16 6 C 0.59 9.40 6.02 -12.57 -0.08 9.32 16 7 O -0.53 -10.47 16.52 5.27 0.09 -10.38 16 8 N -0.59 -8.94 1.70 -176.00 -0.30 -9.24 16 9 C 0.10 1.26 4.86 -4.40 -0.02 1.24 16 10 C -0.14 -1.55 5.06 -26.93 -0.14 -1.69 16 11 C -0.13 -1.58 5.49 -26.60 -0.15 -1.73 16 12 C -0.11 -1.60 5.40 -26.52 -0.14 -1.75 16 13 C -0.12 -2.08 5.22 -26.29 -0.14 -2.22 16 14 C 0.16 2.99 2.29 -67.76 -0.16 2.83 16 15 H 0.07 1.19 3.29 -51.93 -0.17 1.02 16 16 N -0.72 -17.35 5.13 -53.26 -0.27 -17.62 16 17 C -0.24 -6.41 9.88 -15.06 -0.15 -6.56 16 18 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.63 13.06 55.49 0.72 -26.90 16 21 Si 0.91 21.90 29.55 -169.99 -5.02 16.88 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.09 1.68 5.58 -4.44 -0.02 1.65 16 26 C 0.16 1.95 7.40 -16.43 -0.12 1.83 16 27 Cl 0.02 0.20 28.51 -51.86 -1.48 -1.27 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.38 7.77 -51.92 -0.40 -0.02 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.20 1.66 6.45 -52.48 -0.34 1.32 16 32 H 0.07 0.64 5.27 -51.93 -0.27 0.37 16 33 H 0.10 1.27 6.06 -51.93 -0.31 0.96 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.80 5.13 -51.93 -0.27 0.53 16 36 H 0.08 1.12 5.47 -51.93 -0.28 0.84 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.90 5.37 -51.92 -0.28 0.62 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 42 H 0.39 10.07 7.80 -40.82 -0.32 9.75 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 45 H 0.08 1.62 6.84 -51.92 -0.36 1.27 16 LS Contribution 360.03 15.07 5.43 5.43 Total: -1.00 -32.58 360.03 -7.69 -40.26 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.91 Total: 8.37 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.07 Total: 0.92 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.28 Total: -60.21 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.48 Total: -1.27 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.58 -7.69 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088336384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.844 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds