Wall clock time and date at job start Sat Apr 11 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39919 * 125.74900 * 2 1 4 4 C 1.30415 * 108.95508 * 179.87338 * 3 2 1 5 5 C 1.41339 * 108.05272 * 0.38153 * 4 3 2 6 6 C 1.47298 * 126.43624 * 179.77763 * 5 4 3 7 7 O 1.21614 * 120.00048 * 131.43570 * 6 5 4 8 8 N 1.34781 * 119.99980 * 311.43151 * 6 5 4 9 9 C 1.46964 * 120.36563 * 4.14319 * 8 6 5 10 10 C 1.51800 * 109.39746 * 291.89820 * 9 8 6 11 11 C 1.53795 * 109.05875 * 287.19240 * 10 9 8 12 12 C 1.52439 * 109.40504 * 77.78934 * 11 10 9 13 13 C 1.53956 * 110.73515 * 246.27378 * 12 11 10 14 14 C 1.52879 * 109.72918 * 44.36463 * 13 12 11 15 15 H 1.09003 * 109.48191 * 312.92258 * 14 13 12 16 16 N 1.46499 * 109.48407 * 192.87317 * 14 13 12 17 17 C 1.36941 * 119.99658 * 155.08574 * 16 14 13 18 18 H 1.07997 * 120.00432 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99724 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99883 * 0.02562 * 19 17 16 21 21 Si 1.86791 * 120.00066 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47426 * 89.99960 * 21 19 17 23 23 H 1.48499 * 109.47585 * 210.00156 * 21 19 17 24 24 H 1.48507 * 109.47114 * 330.00023 * 21 19 17 25 25 C 1.45333 * 120.36412 * 184.41504 * 8 6 5 26 26 C 1.34354 * 125.74586 * 180.30792 * 2 1 3 27 27 Cl 1.73596 * 126.32044 * 359.97438 * 26 2 1 28 28 H 1.09004 * 109.47032 * 269.68861 * 1 2 3 29 29 H 1.09008 * 109.47116 * 149.69399 * 1 2 3 30 30 H 1.08993 * 109.47039 * 29.69071 * 1 2 3 31 31 H 1.08005 * 125.97284 * 180.14199 * 4 3 2 32 32 H 1.09000 * 109.53167 * 51.52654 * 9 8 6 33 33 H 1.08997 * 109.53155 * 171.75059 * 9 8 6 34 34 H 1.08998 * 109.60953 * 167.29479 * 10 9 8 35 35 H 1.09001 * 109.58814 * 47.07521 * 10 9 8 36 36 H 1.09005 * 109.48448 * 317.81140 * 11 10 9 37 37 H 1.08999 * 109.49630 * 197.77748 * 11 10 9 38 38 H 1.09003 * 109.22459 * 125.94850 * 12 11 10 39 39 H 1.09009 * 109.19214 * 6.57660 * 12 11 10 40 40 H 1.08996 * 109.42292 * 284.28881 * 13 12 11 41 41 H 1.08997 * 109.42650 * 164.44289 * 13 12 11 42 42 H 0.96995 * 120.00323 * 335.08523 * 16 14 13 43 43 H 0.96999 * 119.99611 * 179.97438 * 20 19 17 44 44 H 1.08992 * 109.68195 * 256.39222 * 25 8 6 45 45 H 1.09007 * 109.67223 * 16.89692 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1356 0.0000 4 6 3.5310 0.7588 0.0027 5 6 3.5621 -0.6543 -0.0043 6 6 4.7660 -1.5028 -0.0088 7 8 4.8617 -2.4268 0.7762 8 7 5.7617 -1.2554 -0.8829 9 6 5.6958 -0.0877 -1.7729 10 6 4.5799 -0.2859 -2.7827 11 6 5.0144 -1.3447 -3.8101 12 6 4.8724 -2.7332 -3.1973 13 6 6.2513 -3.3949 -3.0212 14 6 7.2387 -2.3833 -2.4391 15 1 7.1610 -1.4435 -2.9858 16 7 8.6018 -2.9068 -2.5578 17 6 9.6652 -2.0450 -2.5966 18 1 9.4992 -0.9794 -2.5393 19 6 10.9569 -2.5411 -2.7086 20 7 11.1593 -3.8399 -2.7780 21 14 12.4076 -1.3657 -2.7608 22 1 12.8903 -1.1134 -1.3793 23 1 13.5020 -1.9654 -3.5657 24 1 11.9839 -0.0836 -3.3790 25 6 6.9095 -2.1435 -0.9597 26 6 2.2499 -1.0904 -0.0059 27 17 1.7154 -2.7420 -0.0141 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3634 -0.8873 -0.5186 30 1 -0.3633 0.8927 -0.5090 31 1 4.3909 1.4123 0.0056 32 1 5.4921 0.8074 -1.1852 33 1 6.6456 0.0263 -2.2953 34 1 4.3772 0.6555 -3.2933 35 1 3.6791 -0.6236 -2.2703 36 1 6.0543 -1.1751 -4.0892 37 1 4.3837 -1.2721 -4.6961 38 1 4.2578 -3.3527 -3.8504 39 1 4.3885 -2.6477 -2.2242 40 1 6.6141 -3.7397 -3.9895 41 1 6.1619 -4.2448 -2.3447 42 1 8.7510 -3.8639 -2.6090 43 1 12.0618 -4.1865 -2.8567 44 1 7.7638 -1.6831 -0.4636 45 1 6.6725 -3.0920 -0.4776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088336384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:26 Heat of formation + Delta-G solvation = 45.823419 kcal Electronic energy + Delta-G solvation = -28998.064218 eV Core-core repulsion = 25078.424739 eV Total energy + Delta-G solvation = -3919.639479 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.69846 -41.08417 -38.79157 -38.05761 -36.48710 -35.06550 -34.53108 -33.84571 -31.62583 -31.33501 -28.90344 -28.12204 -27.11478 -25.77768 -24.20663 -23.07325 -22.66590 -22.30737 -20.80274 -20.00652 -19.16214 -18.48279 -17.74450 -17.23097 -17.07685 -16.72664 -16.34796 -15.84531 -15.68861 -15.28082 -15.13427 -15.03348 -14.78624 -14.54740 -14.22372 -14.00772 -13.71576 -13.60117 -13.50487 -13.14970 -13.03528 -12.95835 -12.80827 -12.72393 -12.58862 -12.30167 -12.14101 -11.97969 -11.85523 -11.73648 -11.50435 -11.42282 -11.14282 -10.97890 -10.79027 -10.52534 -9.78802 -9.43935 -8.95170 -7.90068 -5.19384 0.18940 0.26715 1.08743 1.49611 1.51199 1.52592 1.60273 1.86858 2.23443 2.60512 3.28947 3.43523 3.68487 3.80779 3.86703 3.95318 4.06292 4.11504 4.23062 4.25117 4.31681 4.35334 4.41800 4.43797 4.58560 4.62234 4.64877 4.75744 4.87676 4.90640 5.00575 5.02730 5.15878 5.18432 5.23984 5.33832 5.41724 5.43518 5.46852 5.50703 5.60447 5.76563 6.28102 6.30869 6.51574 7.22573 7.37184 8.11184 8.34847 9.33566 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020035 B = 0.003258 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.240744 B = 8593.167569 C = 8866.398938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.348 5.348 3 N -0.276 5.276 4 C 0.094 3.906 5 C -0.269 4.269 6 C 0.590 3.410 7 O -0.580 6.580 8 N -0.584 5.584 9 C 0.097 3.903 10 C -0.129 4.129 11 C -0.124 4.124 12 C -0.105 4.105 13 C -0.117 4.117 14 C 0.161 3.839 15 H 0.081 0.919 16 N -0.733 5.733 17 C -0.234 4.234 18 H 0.083 0.917 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.970 3.030 22 H -0.292 1.292 23 H -0.300 1.300 24 H -0.263 1.263 25 C 0.108 3.892 26 C 0.162 3.838 27 Cl 0.018 6.982 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.222 0.778 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.371 0.629 43 H 0.249 0.751 44 H 0.045 0.955 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.863 11.551 1.441 28.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.130 5.130 3 N -0.098 5.098 4 C -0.092 4.092 5 C -0.285 4.285 6 C 0.378 3.622 7 O -0.460 6.460 8 N -0.315 5.315 9 C -0.025 4.025 10 C -0.167 4.167 11 C -0.161 4.161 12 C -0.143 4.143 13 C -0.155 4.155 14 C 0.053 3.947 15 H 0.098 0.902 16 N -0.372 5.372 17 C -0.365 4.365 18 H 0.101 0.899 19 C -0.269 4.269 20 N -0.622 5.622 21 Si 0.799 3.201 22 H -0.219 1.219 23 H -0.227 1.227 24 H -0.187 1.187 25 C -0.018 4.018 26 C 0.003 3.997 27 Cl 0.046 6.954 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.239 0.761 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.728 12.099 1.812 29.395 hybrid contribution 1.834 -1.443 0.259 2.348 sum -24.894 10.656 2.071 27.158 Atomic orbital electron populations 1.22488 0.70681 1.06935 1.05808 1.48787 1.08589 1.01288 1.54317 1.77314 1.01893 1.05666 1.24912 1.24362 0.96083 0.92240 0.96533 1.19696 0.91076 0.94940 1.22789 1.17417 0.82222 0.82879 0.79668 1.90767 1.80820 1.33690 1.40722 1.47641 1.19742 1.27360 1.36790 1.21932 1.00940 0.87273 0.92324 1.22037 0.97808 1.00336 0.96545 1.21800 1.02072 0.93776 0.98432 1.21586 0.95236 0.96984 1.00522 1.21916 0.95718 0.97799 1.00097 1.21082 0.83722 0.97642 0.92295 0.90157 1.42643 1.01210 1.05908 1.87422 1.19629 0.86234 0.90479 1.40194 0.89933 1.25554 1.00192 0.97199 1.03917 1.69834 1.20501 1.12532 1.59330 0.85189 0.79254 0.78585 0.77044 1.21911 1.22711 1.18741 1.22087 0.86456 0.93285 0.99978 1.21943 0.90686 0.84284 1.02757 1.98449 1.89960 1.10537 1.96467 0.88367 0.87689 0.86411 0.76143 0.88600 0.89287 0.88476 0.91789 0.91632 0.90691 0.91806 0.93049 0.92553 0.93950 0.79804 0.94226 0.93661 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 11.28 127.77 1.44 2.07 16 2 N -0.35 -5.95 3.98 -357.40 -1.42 -7.37 16 3 N -0.28 -5.17 12.49 -56.25 -0.70 -5.87 16 4 C 0.09 1.77 9.89 85.67 0.85 2.62 16 5 C -0.27 -6.58 3.50 -20.12 -0.07 -6.65 16 6 C 0.59 18.67 6.02 86.63 0.52 19.19 16 7 O -0.58 -23.31 16.52 -4.07 -0.07 -23.37 16 8 N -0.58 -17.48 1.70 -829.00 -1.41 -18.89 16 9 C 0.10 2.13 4.86 85.90 0.42 2.55 16 10 C -0.13 -2.47 5.06 30.47 0.15 -2.32 16 11 C -0.12 -2.79 5.49 30.68 0.17 -2.62 16 12 C -0.11 -2.85 5.40 30.73 0.17 -2.69 16 13 C -0.12 -4.03 5.22 30.88 0.16 -3.87 16 14 C 0.16 6.18 2.29 45.10 0.10 6.28 16 15 H 0.08 2.88 3.29 -2.39 -0.01 2.87 16 16 N -0.73 -36.31 5.13 -322.42 -1.65 -37.96 16 17 C -0.23 -12.48 9.88 84.03 0.83 -11.65 16 18 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 19 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 20 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 21 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 C 0.11 4.11 5.58 86.75 0.48 4.60 16 26 C 0.16 3.55 7.40 84.32 0.62 4.17 16 27 Cl 0.02 0.38 28.51 -2.72 -0.08 0.30 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.10 0.56 7.77 -2.38 -0.02 0.54 16 30 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 31 H 0.22 2.87 6.45 -2.91 -0.02 2.85 16 32 H 0.10 1.54 5.27 -2.39 -0.01 1.53 16 33 H 0.09 2.14 6.06 -2.39 -0.01 2.12 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.33 5.13 -2.39 -0.01 1.31 16 36 H 0.07 1.70 5.47 -2.38 -0.01 1.69 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.50 5.37 -2.38 -0.01 1.49 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.04 1.56 7.87 -2.39 -0.02 1.54 16 42 H 0.37 20.25 7.80 -92.71 -0.72 19.53 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.05 1.92 8.09 -2.39 -0.02 1.90 16 45 H 0.05 2.36 6.84 -2.38 -0.02 2.35 16 Total: -1.00 -72.64 360.03 3.62 -69.02 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.32 Total: 28.06 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.32 Total: 7.83 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -4.90 Total: -129.29 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.07 Total: -23.37 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.08 Total: 0.30 kcal Total: -72.64 3.62 -69.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088336384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.848 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds