Wall clock time and date at job start Sat Apr 11 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34602 * 126.48867 * 2 1 4 4 Cl 1.73598 * 125.43656 * 359.96793 * 3 2 1 5 5 N 1.31020 * 109.12695 * 179.97438 * 3 2 1 6 6 C 1.33304 * 109.70867 * 359.76474 * 5 3 2 7 7 C 1.36681 * 107.82260 * 0.38105 * 6 5 3 8 8 C 1.46667 * 126.83604 * 179.89554 * 7 6 5 9 9 O 1.21691 * 119.99762 * 187.05852 * 8 7 6 10 10 N 1.34776 * 120.00108 * 6.77785 * 8 7 6 11 11 C 1.46958 * 120.35600 * 357.58685 * 10 8 7 12 12 C 1.52339 * 109.08731 * 68.37501 * 11 10 8 13 13 C 1.53796 * 109.16369 * 72.70603 * 12 11 10 14 14 C 1.52448 * 109.41959 * 282.12625 * 13 12 11 15 15 C 1.53967 * 110.73251 * 113.73034 * 14 13 12 16 16 C 1.52875 * 109.71537 * 315.64600 * 15 14 13 17 17 H 1.09003 * 109.48275 * 47.09043 * 16 15 14 18 18 N 1.46505 * 109.48143 * 167.11348 * 16 15 14 19 19 C 1.36937 * 119.99806 * 205.00272 * 18 16 15 20 20 H 1.08000 * 120.00133 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99863 * 180.02562 * 19 18 16 22 22 N 1.31622 * 119.99878 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99981 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46926 * 90.00522 * 23 21 19 25 25 H 1.48498 * 109.47071 * 210.00694 * 23 21 19 26 26 H 1.48498 * 109.47249 * 330.00742 * 23 21 19 27 27 C 1.45338 * 120.35033 * 177.30746 * 10 8 7 28 28 H 1.08996 * 109.47566 * 274.92174 * 1 2 3 29 29 H 1.09002 * 109.47094 * 34.92582 * 1 2 3 30 30 H 1.09004 * 109.47250 * 154.92315 * 1 2 3 31 31 H 1.08000 * 126.08899 * 180.23985 * 6 5 3 32 32 H 1.08994 * 109.53475 * 188.26025 * 11 10 8 33 33 H 1.09000 * 109.53475 * 308.49402 * 11 10 8 34 34 H 1.08998 * 109.52555 * 192.60860 * 12 11 10 35 35 H 1.09007 * 109.52520 * 312.80142 * 12 11 10 36 36 H 1.08998 * 109.48121 * 42.11028 * 13 12 11 37 37 H 1.09001 * 109.48270 * 162.13538 * 13 12 11 38 38 H 1.09004 * 109.22683 * 234.04731 * 14 13 12 39 39 H 1.09000 * 109.22726 * 353.41031 * 14 13 12 40 40 H 1.09003 * 109.43536 * 75.72203 * 15 14 13 41 41 H 1.09007 * 109.43224 * 195.57135 * 15 14 13 42 42 H 0.96988 * 120.00085 * 25.00391 * 18 16 15 43 43 H 0.97001 * 119.99659 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.67962 * 343.07828 * 27 10 8 45 45 H 1.08998 * 109.67325 * 103.62373 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2654 1.0822 0.0000 4 17 1.7268 2.7325 -0.0008 5 7 3.5159 0.6912 0.0006 6 6 3.5705 -0.6407 0.0061 7 6 2.2875 -1.1120 0.0005 8 6 1.8669 -2.5171 0.0014 9 8 0.6911 -2.8003 -0.1335 10 7 2.7833 -3.4948 0.1461 11 6 4.2115 -3.1645 0.2503 12 6 4.4623 -2.4498 1.5721 13 6 4.3632 -3.4660 2.7222 14 6 2.8959 -3.7539 3.0193 15 6 2.5458 -5.2127 2.6733 16 6 3.1546 -5.5824 1.3206 17 1 4.1952 -5.2591 1.2898 18 7 3.0883 -7.0341 1.1353 19 6 3.9786 -7.6595 0.3037 20 1 4.7292 -7.0825 -0.2158 21 6 3.9154 -9.0350 0.1277 22 7 4.7714 -9.6362 -0.6712 23 14 2.6165 -10.0329 1.0258 24 1 1.3928 -10.1195 0.1891 25 1 3.1353 -11.3996 1.2871 26 1 2.2890 -9.3729 2.3151 27 6 2.3689 -4.8865 0.2066 28 1 -0.3634 0.0882 1.0238 29 1 -0.3633 0.8426 -0.5884 30 1 -0.3634 -0.9308 -0.4356 31 1 4.4686 -1.2406 0.0115 32 1 4.8010 -4.0806 0.2137 33 1 4.4962 -2.5132 -0.5759 34 1 5.4578 -2.0060 1.5631 35 1 3.7152 -1.6683 1.7112 36 1 4.8640 -4.3905 2.4347 37 1 4.8406 -3.0556 3.6121 38 1 2.7032 -3.5800 4.0780 39 1 2.2718 -3.0848 2.4269 40 1 2.9442 -5.8737 3.4431 41 1 1.4624 -5.3242 2.6260 42 1 2.4139 -7.5522 1.6016 43 1 4.7275 -10.5974 -0.7939 44 1 1.3017 -4.9428 0.4208 45 1 2.5790 -5.3737 -0.7455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088346421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:37 Heat of formation + Delta-G solvation = 78.723753 kcal Electronic energy + Delta-G solvation = -29024.148677 eV Core-core repulsion = 25105.935863 eV Total energy + Delta-G solvation = -3918.212814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -42.74197 -40.23083 -37.81791 -37.35568 -35.56257 -34.36693 -33.87970 -32.57667 -30.71752 -29.93451 -27.75846 -27.36533 -26.25794 -24.29663 -22.82149 -22.61414 -21.65226 -21.22624 -19.74552 -19.01651 -17.74341 -17.56792 -16.84289 -16.48515 -16.38739 -15.76071 -15.12725 -14.88301 -14.54934 -14.26314 -14.17230 -14.07414 -13.54889 -13.34394 -13.25499 -13.03892 -12.84908 -12.61173 -12.32284 -12.19602 -11.96513 -11.79143 -11.60613 -11.45899 -11.06748 -10.94798 -10.81643 -10.64124 -10.49205 -10.45630 -10.30315 -10.09954 -9.93645 -9.81369 -9.66295 -9.06904 -8.72720 -8.39124 -7.36940 -5.85273 -3.22139 0.87977 0.96082 2.34380 2.40994 3.10875 3.17924 3.33763 3.36959 3.42161 4.20919 4.40774 4.52607 4.55997 4.66943 4.85365 4.88366 4.92137 4.99676 5.16375 5.23211 5.24975 5.39104 5.45528 5.52205 5.55831 5.60195 5.73718 5.77670 5.92251 5.93669 5.98682 6.08947 6.14281 6.18289 6.28183 6.36912 6.42417 6.48594 6.58346 6.60666 6.89062 7.35680 7.42032 7.88531 8.11268 8.33602 9.10824 9.83652 10.02355 11.32391 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.002971 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.127563 B = 9422.891185 C = 9645.668109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.412 5.412 3 C 0.254 3.746 4 Cl 0.037 6.963 5 N -0.470 5.470 6 C 0.027 3.973 7 C -0.065 4.065 8 C 0.590 3.410 9 O -0.549 6.549 10 N -0.575 5.575 11 C 0.084 3.916 12 C -0.157 4.157 13 C -0.126 4.126 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.162 3.838 17 H 0.076 0.924 18 N -0.743 5.743 19 C -0.250 4.250 20 H 0.091 0.909 21 C 0.009 3.991 22 N -0.930 5.930 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.276 1.276 27 C 0.091 3.909 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.215 0.785 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.082 0.918 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.161 22.599 4.423 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.096 5.096 3 C -0.033 4.033 4 Cl 0.064 6.936 5 N -0.192 5.192 6 C -0.126 4.126 7 C -0.182 4.182 8 C 0.377 3.623 9 O -0.429 6.429 10 N -0.306 5.306 11 C -0.038 4.038 12 C -0.195 4.195 13 C -0.163 4.163 14 C -0.151 4.151 15 C -0.166 4.166 16 C 0.052 3.948 17 H 0.094 0.906 18 N -0.385 5.385 19 C -0.379 4.379 20 H 0.109 0.891 21 C -0.187 4.187 22 N -0.577 5.577 23 Si 0.713 3.287 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.034 4.034 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.196 0.804 43 H 0.071 0.929 44 H 0.100 0.900 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.169 23.005 4.185 23.947 hybrid contribution -1.785 -1.062 0.538 2.146 sum -6.955 21.942 4.722 23.497 Atomic orbital electron populations 1.22470 0.74695 1.06711 1.04538 1.45022 1.08483 1.04441 1.51672 1.23256 0.86865 0.84307 1.08823 1.98423 1.88768 1.09252 1.97122 1.70160 1.15947 1.12854 1.20198 1.24178 0.97188 0.89928 1.01319 1.20905 0.90944 0.88693 1.17634 1.16589 0.85481 0.82748 0.77468 1.90763 1.17060 1.83506 1.51568 1.47479 1.06363 1.06867 1.69909 1.22239 0.81908 1.02340 0.97327 1.22659 1.02855 0.98917 0.95049 1.21827 0.97059 0.99752 0.97697 1.21632 0.96352 0.96865 1.00255 1.22075 1.00473 0.95827 0.98203 1.20823 0.98410 0.84613 0.90994 0.90648 1.42764 1.38920 1.01502 1.55268 1.19028 1.09048 0.90995 1.18868 0.89087 1.24671 0.98471 0.96424 0.99177 1.69697 1.38121 1.09498 1.40349 0.86576 0.82122 0.80126 0.79847 1.21018 1.21726 1.20234 1.22595 1.01182 0.77447 1.02162 0.89720 0.89357 0.86461 0.76923 0.87528 0.89993 0.90030 0.90255 0.90009 0.92186 0.92887 0.92454 0.91602 0.92457 0.80435 0.92947 0.89989 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.52 10.66 59.85 0.64 1.15 16 2 N -0.41 -4.80 3.18 -118.36 -0.38 -5.18 16 3 C 0.25 2.94 8.48 -90.34 -0.77 2.17 16 4 Cl 0.04 0.33 28.85 -51.86 -1.50 -1.17 16 5 N -0.47 -5.96 11.21 -11.48 -0.13 -6.09 16 6 C 0.03 0.32 8.01 -17.48 -0.14 0.18 16 7 C -0.06 -0.83 6.10 -82.10 -0.50 -1.33 16 8 C 0.59 8.64 6.25 -12.86 -0.08 8.56 16 9 O -0.55 -9.39 14.23 5.20 0.07 -9.31 16 10 N -0.58 -8.01 1.69 -176.16 -0.30 -8.31 16 11 C 0.08 0.94 4.81 -4.13 -0.02 0.92 16 12 C -0.16 -1.55 3.78 -26.65 -0.10 -1.66 16 13 C -0.13 -1.41 5.49 -26.60 -0.15 -1.56 16 14 C -0.11 -1.43 5.40 -26.51 -0.14 -1.57 16 15 C -0.13 -1.91 5.21 -26.29 -0.14 -2.05 16 16 C 0.16 2.77 2.29 -67.96 -0.16 2.62 16 17 H 0.08 1.27 3.29 -51.93 -0.17 1.10 16 18 N -0.74 -16.21 4.93 -53.45 -0.26 -16.47 16 19 C -0.25 -6.53 10.36 -15.06 -0.16 -6.68 16 20 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 21 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 22 N -0.93 -28.05 13.97 55.49 0.78 -27.28 16 23 Si 0.88 21.36 27.74 -169.99 -4.71 16.65 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 27 C 0.09 1.52 5.56 -4.64 -0.03 1.49 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.58 7.94 -51.93 -0.41 0.17 16 30 H 0.12 1.25 6.13 -51.93 -0.32 0.93 16 31 H 0.21 2.04 3.24 -52.49 -0.17 1.87 16 32 H 0.11 1.28 6.07 -51.93 -0.32 0.97 16 33 H 0.08 0.78 5.61 -51.93 -0.29 0.48 16 34 H 0.08 0.64 7.97 -51.93 -0.41 0.23 16 35 H 0.08 0.86 4.42 -51.93 -0.23 0.63 16 36 H 0.08 1.03 5.47 -51.93 -0.28 0.74 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.78 5.38 -51.93 -0.28 0.50 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 42 H 0.36 7.97 5.66 -40.82 -0.23 7.74 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.08 1.46 6.80 -51.93 -0.35 1.11 16 45 H 0.08 1.47 8.08 -51.93 -0.42 1.05 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -31.64 347.27 -8.60 -40.24 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.58 Total: 9.30 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -1.83 Total: 2.40 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.29 Total: -63.33 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.31 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.65 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.50 Total: -1.17 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.64 -8.60 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088346421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.962 kcal (2) G-P(sol) polarization free energy of solvation -31.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds