Wall clock time and date at job start Sat Apr 11 2020 06:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34602 * 126.49069 * 2 1 4 4 Cl 1.73603 * 125.43592 * 0.02562 * 3 2 1 5 5 N 1.31023 * 109.12838 * 179.97438 * 3 2 1 6 6 C 1.33302 * 109.70704 * 0.02562 * 5 3 2 7 7 C 1.36672 * 107.82893 * 0.02562 * 6 5 3 8 8 C 1.46654 * 126.84199 * 180.02562 * 7 6 5 9 9 O 1.21700 * 120.00061 * 199.26142 * 8 7 6 10 10 N 1.34775 * 120.00315 * 19.25917 * 8 7 6 11 11 C 1.45333 * 120.36211 * 6.21838 * 10 8 7 12 12 C 1.53444 * 108.41662 * 136.65702 * 11 10 8 13 13 C 1.52876 * 109.38542 * 282.27558 * 12 11 10 14 14 C 1.53953 * 109.72692 * 72.89529 * 13 12 11 15 15 C 1.52445 * 110.73317 * 44.36801 * 14 13 12 16 16 C 1.53799 * 109.40344 * 246.27158 * 15 14 13 17 17 H 1.09004 * 109.51978 * 317.86383 * 16 15 14 18 18 N 1.46499 * 109.52646 * 197.73770 * 16 15 14 19 19 C 1.36938 * 120.00333 * 154.99736 * 18 16 15 20 20 H 1.07993 * 119.99526 * 359.97438 * 19 18 16 21 21 C 1.38808 * 119.99951 * 180.02562 * 19 18 16 22 22 N 1.31626 * 120.00339 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00015 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46851 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46919 * 119.99938 * 23 21 19 26 26 H 1.48491 * 109.47218 * 240.00037 * 23 21 19 27 27 C 1.46960 * 120.37140 * 185.93784 * 10 8 7 28 28 H 1.09001 * 109.47137 * 264.57510 * 1 2 3 29 29 H 1.09000 * 109.47369 * 24.57385 * 1 2 3 30 30 H 1.09003 * 109.47361 * 144.57507 * 1 2 3 31 31 H 1.08002 * 126.08377 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.67512 * 256.38631 * 11 10 8 33 33 H 1.09002 * 109.67598 * 16.88807 * 11 10 8 34 34 H 1.08994 * 109.48431 * 42.25532 * 12 11 10 35 35 H 1.09005 * 109.48497 * 162.28279 * 12 11 10 36 36 H 1.08999 * 109.43108 * 192.97088 * 13 12 11 37 37 H 1.08995 * 109.43073 * 312.82129 * 13 12 11 38 38 H 1.09005 * 109.22594 * 164.68798 * 14 13 12 39 39 H 1.08991 * 109.22873 * 284.08411 * 14 13 12 40 40 H 1.09002 * 109.48155 * 6.24844 * 15 14 13 41 41 H 1.09005 * 109.48551 * 126.29111 * 15 14 13 42 42 H 0.97005 * 119.99422 * 334.99929 * 18 16 15 43 43 H 0.97000 * 120.00290 * 179.97438 * 22 21 19 44 44 H 1.09007 * 109.52956 * 51.52719 * 27 10 8 45 45 H 1.08997 * 109.53355 * 171.74788 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2654 1.0821 0.0000 4 17 1.7268 2.7325 0.0006 5 7 3.5160 0.6912 0.0006 6 6 3.5705 -0.6408 0.0004 7 6 2.2876 -1.1121 -0.0009 8 6 1.8670 -2.5170 -0.0010 9 8 0.7397 -2.8147 -0.3499 10 7 2.7288 -3.4786 0.3851 11 6 4.0286 -3.1243 0.9301 12 6 4.3014 -4.0138 2.1504 13 6 3.5100 -3.4885 3.3482 14 6 2.0149 -3.8055 3.1627 15 6 1.8234 -5.2359 2.6715 16 6 1.2472 -5.2137 1.2457 17 1 0.4727 -4.4497 1.1777 18 7 0.6722 -6.5234 0.9295 19 6 -0.3166 -6.6279 -0.0121 20 1 -0.6728 -5.7446 -0.5212 21 6 -0.8618 -7.8689 -0.3112 22 7 -0.4281 -8.9454 0.3097 23 14 -2.2112 -8.0113 -1.5951 24 1 -2.5173 -6.6654 -2.1429 25 1 -1.7570 -8.9009 -2.6940 26 1 -3.4316 -8.5809 -0.9696 27 6 2.3621 -4.8967 0.2655 28 1 -0.3633 -0.0972 1.0231 29 1 -0.3634 0.9346 -0.4274 30 1 -0.3634 -0.8374 -0.5957 31 1 4.4686 -1.2406 0.0003 32 1 4.7994 -3.2882 0.1770 33 1 4.0271 -2.0769 1.2318 34 1 3.9935 -5.0361 1.9312 35 1 5.3664 -3.9966 2.3821 36 1 3.8714 -3.9657 4.2591 37 1 3.6447 -2.4098 3.4270 38 1 1.5007 -3.6814 4.1158 39 1 1.5897 -3.1162 2.4332 40 1 2.7843 -5.7505 2.6673 41 1 1.1337 -5.7586 3.3342 42 1 0.9919 -7.3167 1.3872 43 1 -0.8093 -9.8125 0.1010 44 1 2.0160 -5.0993 -0.7481 45 1 3.2305 -5.5175 0.4860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088346422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:43 Heat of formation + Delta-G solvation = 60.550064 kcal Electronic energy + Delta-G solvation = -28999.584528 eV Core-core repulsion = 25080.583643 eV Total energy + Delta-G solvation = -3919.000884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.59857 -40.13212 -37.52119 -37.30442 -35.24355 -34.48801 -33.83119 -32.17956 -30.36394 -29.71610 -27.46627 -27.36675 -26.20639 -24.25790 -23.29145 -22.01046 -21.98915 -20.66843 -19.88209 -19.10997 -17.44991 -17.12379 -16.85166 -16.53912 -16.03113 -15.68745 -15.02495 -14.80656 -14.47637 -14.29468 -13.98581 -13.70256 -13.67515 -13.43988 -13.08468 -13.01613 -12.84544 -12.69759 -12.23092 -12.11111 -11.94101 -11.70216 -11.42544 -11.10280 -10.95640 -10.82992 -10.73682 -10.65837 -10.46037 -10.26460 -10.11552 -10.08676 -9.94649 -9.59961 -9.53246 -9.02639 -8.75366 -8.32745 -6.93700 -5.73968 -3.02511 0.90340 1.03639 2.36562 2.43188 3.14757 3.25473 3.46047 3.52615 3.55783 4.27348 4.44777 4.59106 4.63403 4.70032 4.92960 4.96379 4.99596 5.04705 5.25291 5.32178 5.32886 5.37183 5.56707 5.60943 5.66134 5.74252 5.79743 5.84543 5.95793 6.03389 6.06776 6.10894 6.14745 6.35185 6.39622 6.42564 6.47372 6.63639 6.66148 6.85237 7.15489 7.36424 7.53724 7.83184 8.24262 8.45368 9.56702 10.11513 10.46815 11.48626 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.003605 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.644454 B = 7765.576082 C = 9189.394334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.411 5.411 3 C 0.253 3.747 4 Cl 0.038 6.962 5 N -0.469 5.469 6 C 0.028 3.972 7 C -0.052 4.052 8 C 0.584 3.416 9 O -0.523 6.523 10 N -0.584 5.584 11 C 0.083 3.917 12 C -0.150 4.150 13 C -0.114 4.114 14 C -0.115 4.115 15 C -0.131 4.131 16 C 0.163 3.837 17 H 0.066 0.934 18 N -0.719 5.719 19 C -0.232 4.232 20 H 0.075 0.925 21 C -0.015 4.015 22 N -0.935 5.935 23 Si 0.904 3.096 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.101 3.899 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.199 0.801 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.383 0.617 43 H 0.253 0.747 44 H 0.078 0.922 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.969 19.682 3.848 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.095 5.095 3 C -0.033 4.033 4 Cl 0.065 6.935 5 N -0.190 5.190 6 C -0.126 4.126 7 C -0.170 4.170 8 C 0.370 3.630 9 O -0.400 6.400 10 N -0.317 5.317 11 C -0.040 4.040 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.154 4.154 15 C -0.169 4.169 16 C 0.052 3.948 17 H 0.084 0.916 18 N -0.359 5.359 19 C -0.363 4.363 20 H 0.093 0.907 21 C -0.210 4.210 22 N -0.584 5.584 23 Si 0.735 3.265 24 H -0.205 1.205 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.022 4.022 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.133 0.867 31 H 0.215 0.785 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.217 0.783 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.611 20.198 3.529 22.645 hybrid contribution -1.322 -0.671 -0.574 1.590 sum 8.289 19.527 2.955 21.419 Atomic orbital electron populations 1.22461 0.74431 1.06086 1.05351 1.45052 1.08622 1.04422 1.51383 1.23190 0.86729 0.84348 1.09039 1.98424 1.88739 1.09174 1.97154 1.70073 1.16107 1.12725 1.20130 1.23164 0.96157 0.89846 1.03385 1.21045 0.90958 0.88914 1.16127 1.16620 0.85107 0.82458 0.78812 1.90884 1.18705 1.82404 1.47994 1.47590 1.15890 1.06999 1.61193 1.22300 0.84969 1.01008 0.95761 1.22329 1.00157 1.01540 0.94691 1.21715 0.95650 1.00200 0.97577 1.21648 0.95501 0.97688 1.00516 1.22105 1.00990 0.95752 0.98026 1.20631 0.93528 0.90406 0.90266 0.91628 1.42408 1.43172 1.02978 1.47370 1.19385 1.10683 0.93205 1.13036 0.90719 1.24727 1.00370 0.95574 1.00333 1.69672 1.45565 0.97941 1.45222 0.86150 0.81762 0.77415 0.81164 1.20479 1.21954 1.21966 1.22642 0.99620 0.76878 1.03059 0.89467 0.89100 0.86711 0.78475 0.91369 0.88596 0.89131 0.90995 0.92143 0.92480 0.92947 0.92307 0.91787 0.91793 0.78300 0.93678 0.90410 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.59 10.65 59.84 0.64 1.23 16 2 N -0.41 -5.07 3.18 -118.36 -0.38 -5.44 16 3 C 0.25 3.03 8.48 -90.34 -0.77 2.27 16 4 Cl 0.04 0.35 28.63 -51.86 -1.48 -1.14 16 5 N -0.47 -6.01 11.21 -11.48 -0.13 -6.14 16 6 C 0.03 0.32 9.56 -17.48 -0.17 0.16 16 7 C -0.05 -0.70 6.54 -82.10 -0.54 -1.24 16 8 C 0.58 9.09 6.15 -12.86 -0.08 9.01 16 9 O -0.52 -10.10 13.65 5.19 0.07 -10.03 16 10 N -0.58 -8.11 1.70 -176.24 -0.30 -8.41 16 11 C 0.08 0.83 4.46 -4.44 -0.02 0.81 16 12 C -0.15 -1.46 5.45 -26.56 -0.14 -1.61 16 13 C -0.11 -1.19 5.75 -26.30 -0.15 -1.35 16 14 C -0.12 -1.55 5.40 -26.52 -0.14 -1.70 16 15 C -0.13 -2.09 4.97 -26.60 -0.13 -2.22 16 16 C 0.16 3.18 2.38 -68.12 -0.16 3.02 16 17 H 0.07 1.46 5.93 -51.93 -0.31 1.15 16 18 N -0.72 -17.68 5.12 -53.62 -0.27 -17.96 16 19 C -0.23 -6.48 9.89 -15.06 -0.15 -6.63 16 20 H 0.07 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.94 -28.08 13.06 55.49 0.72 -27.36 16 23 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 27 C 0.10 1.73 4.74 -4.40 -0.02 1.71 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.69 7.62 -51.93 -0.40 0.29 16 30 H 0.11 1.39 6.58 -51.93 -0.34 1.05 16 31 H 0.20 1.75 5.52 -52.49 -0.29 1.46 16 32 H 0.07 0.56 7.96 -51.93 -0.41 0.15 16 33 H 0.10 0.89 4.05 -51.93 -0.21 0.68 16 34 H 0.09 1.04 3.35 -51.93 -0.17 0.86 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.88 5.37 -51.93 -0.28 0.60 16 40 H 0.06 0.94 5.47 -51.93 -0.28 0.65 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.38 9.91 7.80 -40.82 -0.32 9.59 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.08 1.58 8.10 -51.92 -0.42 1.16 16 45 H 0.08 1.19 6.06 -51.93 -0.31 0.88 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -32.64 355.89 -9.18 -41.82 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.82 Total: 8.54 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -1.93 Total: 2.95 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -0.35 Total: -65.31 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.48 Total: -1.14 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.64 -9.18 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088346422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.370 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds