Wall clock time and date at job start Sat Apr 11 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34233 * 125.73811 * 2 1 4 4 C 1.38066 * 107.43649 * 180.30165 * 3 2 1 5 5 C 1.47388 * 126.42454 * 179.71429 * 4 3 2 6 6 O 1.21603 * 120.00079 * 131.16845 * 5 4 3 7 7 N 1.34781 * 119.99890 * 311.17767 * 5 4 3 8 8 C 1.46964 * 120.36603 * 4.12463 * 7 5 4 9 9 C 1.51795 * 109.39917 * 291.90739 * 8 7 5 10 10 C 1.53804 * 109.05647 * 287.18546 * 9 8 7 11 11 C 1.52443 * 109.39675 * 77.79318 * 10 9 8 12 12 C 1.53956 * 110.73074 * 246.26983 * 11 10 9 13 13 C 1.52884 * 109.73067 * 44.36988 * 12 11 10 14 14 H 1.08999 * 109.47977 * 312.92107 * 13 12 11 15 15 N 1.46493 * 109.48857 * 192.87248 * 13 12 11 16 16 C 1.36933 * 120.00227 * 155.08723 * 15 13 12 17 17 H 1.07996 * 119.99765 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99972 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99893 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00030 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47392 * 89.99862 * 20 18 16 22 22 H 1.48498 * 109.47036 * 209.99706 * 20 18 16 23 23 H 1.48501 * 109.46999 * 329.99499 * 20 18 16 24 24 C 1.45328 * 120.36314 * 184.40751 * 7 5 4 25 25 C 1.41393 * 107.15594 * 359.58726 * 4 3 2 26 26 Cl 1.73602 * 126.00630 * 180.16292 * 25 4 3 27 27 N 1.30530 * 107.98755 * 0.41977 * 25 4 3 28 28 H 1.09005 * 109.47442 * 90.00082 * 1 2 3 29 29 H 1.09002 * 109.47138 * 210.00325 * 1 2 3 30 30 H 1.09004 * 109.46856 * 329.99999 * 1 2 3 31 31 H 1.07997 * 126.27915 * 0.03618 * 3 2 1 32 32 H 1.09002 * 109.53124 * 51.53268 * 8 7 5 33 33 H 1.08999 * 109.53427 * 171.75186 * 8 7 5 34 34 H 1.09002 * 109.61238 * 167.29635 * 9 8 7 35 35 H 1.08998 * 109.59455 * 47.07338 * 9 8 7 36 36 H 1.08992 * 109.48431 * 317.81526 * 10 9 8 37 37 H 1.09002 * 109.49322 * 197.77842 * 10 9 8 38 38 H 1.08999 * 109.22206 * 125.95453 * 11 10 9 39 39 H 1.08992 * 109.19674 * 6.57497 * 11 10 9 40 40 H 1.09004 * 109.43021 * 284.28919 * 12 11 10 41 41 H 1.08999 * 109.42679 * 164.44684 * 12 11 10 42 42 H 0.97007 * 119.99789 * 335.08387 * 15 13 12 43 43 H 0.97000 * 119.99756 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.67536 * 256.38393 * 24 7 5 45 45 H 1.08999 * 109.68216 * 16.88627 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2490 1.0896 0.0000 4 6 3.5598 0.6560 -0.0069 5 6 4.7631 1.5072 -0.0154 6 8 5.6644 1.2937 0.7725 7 7 4.8643 2.5223 -0.8962 8 6 3.7434 2.8446 -1.7904 9 6 3.5585 1.7197 -2.7927 10 6 4.7034 1.7680 -3.8187 11 6 5.9634 1.1740 -3.1995 12 6 7.0479 2.2534 -3.0292 13 6 6.4238 3.5263 -2.4568 14 1 5.5130 3.7636 -3.0067 15 7 7.3732 4.6349 -2.5816 16 6 6.9168 5.9251 -2.6300 17 1 5.8569 6.1252 -2.5766 18 6 7.8165 6.9755 -2.7488 19 7 9.1082 6.7315 -2.8144 20 14 7.1940 8.7355 -2.8141 21 1 7.1165 9.2847 -1.4366 22 1 8.1259 9.5605 -3.6241 23 1 5.8446 8.7606 -3.4336 24 6 6.0853 3.3063 -0.9764 25 6 3.5316 -0.7576 -0.0014 26 17 4.9153 -1.8060 -0.0025 27 7 2.2823 -1.1358 -0.0009 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9156 2.1168 0.0005 32 1 2.8307 2.9560 -1.2050 33 1 3.9544 3.7742 -2.3189 34 1 2.6044 1.8400 -3.3058 35 1 3.5747 0.7613 -2.2737 36 1 4.8918 2.8028 -4.1046 37 1 4.4255 1.1918 -4.7012 38 1 6.3427 0.3832 -3.8467 39 1 5.7194 0.7533 -2.2241 40 1 7.4959 2.4734 -3.9983 41 1 7.8178 1.8896 -2.3489 42 1 8.3252 4.4551 -2.6299 43 1 9.7368 7.4656 -2.8971 44 1 5.9362 4.2689 -0.4872 45 1 6.8991 2.7692 -0.4893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088413136.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:50 Heat of formation + Delta-G solvation = 67.617778 kcal Electronic energy + Delta-G solvation = -28973.188625 eV Core-core repulsion = 25054.494220 eV Total energy + Delta-G solvation = -3918.694405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.82494 -39.87668 -37.45352 -36.87278 -34.90242 -33.74401 -33.52968 -32.33096 -30.74693 -29.89371 -27.70053 -26.81356 -26.08779 -24.14218 -22.83652 -22.01763 -21.52085 -21.36325 -19.66804 -18.78691 -17.38182 -17.13648 -16.57041 -16.09875 -15.91320 -15.52627 -15.28933 -14.60591 -14.36315 -14.21612 -13.91324 -13.63253 -13.56147 -13.43800 -13.30162 -13.06210 -12.79439 -12.35208 -12.25609 -11.87630 -11.80101 -11.52187 -11.41860 -11.29519 -10.94070 -10.86893 -10.80174 -10.66021 -10.41816 -10.23989 -10.17575 -9.78504 -9.68026 -9.63739 -9.59603 -8.98097 -8.82458 -8.15078 -6.98588 -5.79212 -3.08703 1.21693 1.25982 1.88689 2.44066 3.02742 3.40628 3.43411 3.46460 3.48204 4.12079 4.30087 4.56341 4.66795 4.70312 4.84221 4.93696 5.04330 5.05622 5.10244 5.16345 5.43006 5.44050 5.52199 5.60586 5.66385 5.70062 5.78551 5.92176 5.98248 6.05913 6.11095 6.19774 6.36638 6.36987 6.40765 6.52293 6.60448 6.69905 6.84534 6.87082 7.03578 7.13597 7.65207 7.72341 8.38553 8.47891 9.50049 10.07486 10.42033 11.43087 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.003386 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.931291 B = 8268.138887 C = 8795.036054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.351 5.351 3 C 0.100 3.900 4 C -0.255 4.255 5 C 0.587 3.413 6 O -0.530 6.530 7 N -0.590 5.590 8 C 0.105 3.895 9 C -0.140 4.140 10 C -0.125 4.125 11 C -0.114 4.114 12 C -0.123 4.123 13 C 0.159 3.841 14 H 0.065 0.935 15 N -0.719 5.719 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.905 3.095 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.091 3.909 25 C 0.163 3.837 26 Cl 0.024 6.976 27 N -0.284 5.284 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.192 0.808 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.068 0.932 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.367 -14.497 2.372 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.132 5.132 3 C -0.050 4.050 4 C -0.271 4.271 5 C 0.373 3.627 6 O -0.406 6.406 7 N -0.323 5.323 8 C -0.018 4.018 9 C -0.179 4.179 10 C -0.162 4.162 11 C -0.152 4.152 12 C -0.161 4.161 13 C 0.048 3.952 14 H 0.082 0.918 15 N -0.360 5.360 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.034 4.034 25 C -0.029 4.029 26 Cl 0.052 6.948 27 N -0.109 5.109 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.209 0.791 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.763 -15.498 2.762 25.266 hybrid contribution 0.547 1.555 -0.017 1.649 sum -19.216 -13.943 2.746 23.899 Atomic orbital electron populations 1.22065 0.72773 1.05226 1.04221 1.48121 1.06990 1.03010 1.55040 1.23146 0.89437 0.93929 0.98468 1.20168 0.94004 0.92289 1.20602 1.17096 0.85152 0.79732 0.80674 1.90794 1.40534 1.70441 1.38872 1.47723 1.16396 1.32199 1.35977 1.21613 0.88714 0.99526 0.91941 1.22125 0.98737 0.99564 0.97446 1.21803 0.94637 1.02472 0.97274 1.21638 0.95226 0.97771 1.00573 1.22011 0.97607 0.95259 1.01256 1.20909 0.94431 0.87922 0.91923 0.91757 1.42421 1.05175 1.01113 1.87281 1.19186 0.92162 0.83149 1.42845 0.91234 1.24748 0.95297 0.97898 1.02733 1.69664 1.00383 1.30858 1.56775 0.86224 0.77552 0.85116 0.77459 1.21716 1.21806 1.20782 1.22632 0.85030 0.94598 1.01127 1.22566 0.89408 0.89903 1.01029 1.98427 1.34775 1.64988 1.96632 1.77186 1.00035 1.07612 1.26068 0.89832 0.88704 0.88682 0.79082 0.92252 0.88474 0.91589 0.91264 0.90249 0.92696 0.93081 0.92071 0.91792 0.92389 0.78093 0.93437 0.91388 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.36 11.44 59.85 0.68 1.04 16 2 N -0.35 -3.07 3.98 -67.59 -0.27 -3.34 16 3 C 0.10 0.93 9.37 -16.56 -0.16 0.77 16 4 C -0.25 -3.35 3.52 -105.04 -0.37 -3.72 16 5 C 0.59 9.41 6.06 -12.53 -0.08 9.33 16 6 O -0.53 -10.51 16.57 5.27 0.09 -10.43 16 7 N -0.59 -8.85 1.70 -175.97 -0.30 -9.15 16 8 C 0.11 1.22 4.86 -4.40 -0.02 1.20 16 9 C -0.14 -1.53 5.07 -26.92 -0.14 -1.66 16 10 C -0.12 -1.57 5.49 -26.60 -0.15 -1.71 16 11 C -0.11 -1.64 5.40 -26.52 -0.14 -1.79 16 12 C -0.12 -2.10 5.22 -26.29 -0.14 -2.24 16 13 C 0.16 2.99 2.29 -67.76 -0.16 2.83 16 14 H 0.07 1.17 3.29 -51.93 -0.17 1.00 16 15 N -0.72 -17.30 5.12 -53.27 -0.27 -17.57 16 16 C -0.24 -6.39 9.88 -15.06 -0.15 -6.54 16 17 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -27.52 13.06 55.49 0.72 -26.80 16 20 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.09 1.67 5.58 -4.44 -0.02 1.65 16 25 C 0.16 2.22 7.77 -16.91 -0.13 2.09 16 26 Cl 0.02 0.33 29.19 -51.86 -1.51 -1.19 16 27 N -0.28 -3.47 12.50 33.18 0.41 -3.05 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.19 1.12 6.44 -52.49 -0.34 0.79 16 32 H 0.06 0.51 5.30 -51.93 -0.28 0.24 16 33 H 0.10 1.22 6.06 -51.93 -0.31 0.91 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.83 5.14 -51.93 -0.27 0.56 16 36 H 0.08 1.11 5.47 -51.93 -0.28 0.82 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.95 5.37 -51.93 -0.28 0.67 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 42 H 0.39 10.07 7.80 -40.82 -0.32 9.75 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 1.38 8.09 -51.93 -0.42 0.96 16 45 H 0.08 1.64 6.84 -51.93 -0.36 1.28 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -33.54 361.24 -7.70 -41.24 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -5.94 Total: 7.26 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -1.06 Total: 0.88 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.30 Total: -59.91 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.51 Total: -1.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.54 -7.70 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088413136.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.861 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds