Wall clock time and date at job start Sat Apr 11 2020 06:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34764 * 124.18236 * 2 1 4 4 O 1.21231 * 127.15515 * 359.97438 * 3 2 1 5 5 C 1.51583 * 105.68716 * 179.74648 * 3 2 1 6 6 N 1.47315 * 103.59152 * 0.32746 * 5 3 2 7 7 C 1.46501 * 126.68846 * 179.97438 * 6 5 3 8 8 C 1.50698 * 109.47213 * 269.71087 * 7 6 5 9 9 O 1.21280 * 119.99736 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99919 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99847 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.45999 * 324.99278 * 11 10 8 13 13 C 1.53039 * 109.46006 * 84.96980 * 11 10 8 14 14 C 1.53187 * 109.31205 * 181.37231 * 13 11 10 15 15 N 1.46922 * 108.77730 * 305.36428 * 14 13 11 16 16 C 1.36936 * 120.63401 * 233.58906 * 15 14 13 17 17 H 1.08007 * 119.99848 * 27.68341 * 16 15 14 18 18 C 1.38817 * 120.00320 * 207.68226 * 16 15 14 19 19 N 1.31611 * 119.99818 * 17.36640 * 18 16 15 20 20 Si 1.86796 * 119.99917 * 197.36264 * 18 16 15 21 21 H 1.48502 * 109.47407 * 60.00340 * 20 18 16 22 22 H 1.48500 * 109.46998 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47631 * 299.99947 * 20 18 16 24 24 C 1.46924 * 118.74116 * 53.60701 * 15 14 13 25 25 C 1.53038 * 109.44716 * 205.02875 * 11 10 8 26 26 H 1.08999 * 109.49995 * 298.57295 * 25 11 10 27 27 O 1.42902 * 109.49738 * 58.66736 * 25 11 10 28 28 C 1.33797 * 124.17590 * 179.97438 * 2 1 3 29 29 O 1.21539 * 123.76775 * 0.03973 * 28 2 1 30 30 H 1.08999 * 109.47225 * 270.04800 * 1 2 3 31 31 H 1.09000 * 109.47041 * 30.04253 * 1 2 3 32 32 H 1.09001 * 109.47492 * 150.04374 * 1 2 3 33 33 H 1.09005 * 110.68831 * 241.75930 * 5 3 2 34 34 H 1.08994 * 110.51332 * 118.81188 * 5 3 2 35 35 H 1.09007 * 109.46736 * 149.70802 * 7 6 5 36 36 H 1.09002 * 109.47351 * 29.71717 * 7 6 5 37 37 H 0.96995 * 120.00025 * 359.97438 * 10 8 7 38 38 H 1.09000 * 109.49740 * 301.31950 * 13 11 10 39 39 H 1.08999 * 109.50257 * 61.38445 * 13 11 10 40 40 H 1.09006 * 109.58877 * 65.15056 * 14 13 11 41 41 H 1.09000 * 109.58831 * 185.57542 * 14 13 11 42 42 H 0.97002 * 120.00267 * 179.97438 * 19 18 16 43 43 H 1.09003 * 109.58986 * 66.17854 * 24 15 14 44 44 H 1.09001 * 109.59065 * 186.60812 * 24 15 14 45 45 H 0.96704 * 113.99894 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1148 0.0000 4 8 1.8342 2.2634 -0.0004 5 6 3.6596 0.6340 0.0065 6 7 3.5337 -0.8338 0.0015 7 6 4.6294 -1.8063 0.0041 8 6 5.0075 -2.1409 -1.4158 9 8 4.4199 -1.6181 -2.3390 10 7 5.9986 -3.0211 -1.6597 11 6 6.3665 -3.3459 -3.0400 12 1 5.4734 -3.3402 -3.6648 13 6 7.3602 -2.3052 -3.5612 14 6 7.7162 -2.6285 -5.0156 15 7 8.2002 -4.0139 -5.0873 16 6 9.4098 -4.3016 -5.6612 17 1 10.1973 -3.5624 -5.6605 18 6 9.6238 -5.5432 -6.2439 19 7 8.5999 -6.3094 -6.5550 20 14 11.3650 -6.1264 -6.5867 21 1 12.1248 -6.1924 -5.3125 22 1 11.3222 -7.4749 -7.2072 23 1 12.0323 -5.1761 -7.5122 24 6 7.3617 -5.0849 -4.5318 25 6 7.0096 -4.7340 -3.0827 26 1 7.9164 -4.7336 -2.4779 27 8 6.0922 -5.7008 -2.5672 28 6 2.2166 -1.1069 0.0005 29 8 1.7602 -2.2334 0.0003 30 1 -0.3633 0.0009 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3634 -0.8904 -0.5131 33 1 4.1746 0.9717 0.9059 34 1 4.1812 0.9772 -0.8870 35 1 4.3094 -2.7127 0.5182 36 1 5.4911 -1.3815 0.5191 37 1 6.4687 -3.4389 -0.9213 38 1 6.9099 -1.3140 -3.5087 39 1 8.2634 -2.3272 -2.9515 40 1 6.8308 -2.5180 -5.6418 41 1 8.4969 -1.9504 -5.3602 42 1 8.7494 -7.1769 -6.9625 43 1 6.4474 -5.1747 -5.1184 44 1 7.9086 -6.0274 -4.5570 45 1 6.4342 -6.6053 -2.5647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090720701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:56 Heat of formation + Delta-G solvation = -87.164286 kcal Electronic energy + Delta-G solvation = -30317.140609 eV Core-core repulsion = 25951.025185 eV Total energy + Delta-G solvation = -4366.115424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.57157 -39.87858 -38.85964 -37.95043 -36.37054 -35.44386 -35.30386 -34.39023 -32.31724 -30.81897 -29.42007 -28.88823 -27.46693 -26.86966 -25.01213 -22.97935 -22.46296 -21.88391 -20.86910 -20.21154 -19.51466 -17.94453 -17.80632 -17.14970 -16.97511 -16.63470 -16.59793 -16.06208 -15.93406 -15.16179 -14.94036 -14.74164 -14.48148 -14.43308 -14.24700 -13.92182 -13.75391 -13.46758 -13.35889 -13.02436 -12.92956 -12.80690 -12.44686 -12.23803 -11.94590 -11.72659 -11.26291 -11.19582 -10.85786 -10.84311 -10.55172 -10.47140 -10.28254 -10.26605 -10.10476 -10.04817 -9.70293 -9.45377 -9.12156 -8.84060 -8.57346 -6.82721 -5.90700 -3.34452 1.32478 1.69255 2.53690 2.64605 2.72477 3.30234 3.34504 3.37572 3.37973 3.70853 4.31575 4.37362 4.50872 4.62168 4.72466 4.80349 4.89437 4.93290 4.98853 5.20192 5.25681 5.30747 5.34707 5.39847 5.47915 5.54493 5.85297 5.93973 5.97762 6.04646 6.15814 6.36608 6.40455 6.64497 6.75773 6.78243 6.85362 7.02303 7.07749 7.41362 7.59190 7.68337 7.79636 8.06147 8.28134 8.32411 9.07230 9.70085 10.26132 11.17726 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027491 B = 0.002311 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.283329 B =12110.881672 C =12535.478259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.579 5.579 3 C 0.527 3.473 4 O -0.474 6.474 5 C 0.065 3.935 6 N -0.609 5.609 7 C 0.134 3.866 8 C 0.490 3.510 9 O -0.533 6.533 10 N -0.711 5.711 11 C 0.163 3.837 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.144 3.856 15 N -0.589 5.589 16 C -0.258 4.258 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.148 3.852 25 C 0.072 3.928 26 H 0.052 0.948 27 O -0.572 6.572 28 C 0.706 3.294 29 O -0.536 6.536 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.061 0.939 42 H 0.256 0.744 43 H 0.029 0.971 44 H 0.094 0.906 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.242 10.372 17.900 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.325 5.325 3 C 0.314 3.686 4 O -0.344 6.344 5 C -0.061 4.061 6 N -0.346 5.346 7 C 0.008 3.992 8 C 0.274 3.726 9 O -0.410 6.410 10 N -0.362 5.362 11 C 0.059 3.941 12 H 0.105 0.895 13 C -0.178 4.178 14 C 0.018 3.982 15 N -0.313 5.313 16 C -0.387 4.387 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.734 3.266 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.021 3.979 25 C 0.011 3.989 26 H 0.070 0.930 27 O -0.377 6.377 28 C 0.408 3.592 29 O -0.409 6.409 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.232 0.768 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.112 0.888 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.505 11.034 17.196 22.534 hybrid contribution 1.488 -1.114 -0.067 1.860 sum -8.017 9.920 17.129 21.356 Atomic orbital electron populations 1.21833 0.74937 1.04902 1.03561 1.46227 1.09668 1.08065 1.68541 1.20837 0.88856 0.84691 0.74198 1.90817 1.79188 1.17895 1.46499 1.22539 0.95938 0.80781 1.06834 1.46928 1.04760 1.06148 1.76801 1.21180 0.89015 0.93486 0.95501 1.20994 0.80097 0.79933 0.91601 1.90725 1.52445 1.52076 1.45712 1.46059 1.36299 1.44116 1.09687 1.21009 0.98541 0.93031 0.81546 0.89471 1.22402 0.98077 0.97489 0.99831 1.20937 0.97486 0.87883 0.91931 1.44006 1.19924 1.00368 1.66983 1.19161 0.88783 0.99900 1.30868 0.91379 1.25084 0.97343 0.99222 0.97937 1.70016 1.28692 1.11863 1.43978 0.86338 0.84289 0.77883 0.78074 1.20980 1.21576 1.20752 1.21428 0.94946 0.94272 0.87295 1.22969 0.90144 0.87070 0.98688 0.92980 1.86426 1.44902 1.20032 1.86349 1.15750 0.81723 0.84220 0.77535 1.91002 1.75041 1.20306 1.54515 0.90907 0.89376 0.89105 0.85741 0.85573 0.86171 0.86371 0.76835 0.91931 0.91952 0.95894 0.92086 0.93372 0.95255 0.88760 0.77680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.73 59.85 0.64 1.35 16 2 N -0.58 -6.07 3.00 -128.17 -0.39 -6.46 16 3 C 0.53 5.16 8.32 -10.56 -0.09 5.08 16 4 O -0.47 -5.67 17.76 5.60 0.10 -5.57 16 5 C 0.06 0.47 7.66 -4.31 -0.03 0.44 16 6 N -0.61 -6.03 2.51 -181.39 -0.45 -6.49 16 7 C 0.13 1.14 6.63 -5.19 -0.03 1.10 16 8 C 0.49 6.53 7.86 -10.99 -0.09 6.44 16 9 O -0.53 -9.49 16.09 5.56 0.09 -9.40 16 10 N -0.71 -9.33 4.92 -53.77 -0.26 -9.59 16 11 C 0.16 2.77 2.12 -67.89 -0.14 2.62 16 12 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 13 C -0.14 -2.32 5.65 -26.61 -0.15 -2.47 16 14 C 0.14 2.95 6.52 -3.72 -0.02 2.92 16 15 N -0.59 -14.04 2.99 -172.32 -0.52 -14.56 16 16 C -0.26 -6.73 9.59 -15.06 -0.14 -6.88 16 17 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 18 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 19 N -0.90 -25.19 11.19 55.49 0.62 -24.56 16 20 Si 0.90 20.75 29.59 -169.99 -5.03 15.72 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.15 3.33 4.94 -3.71 -0.02 3.31 16 25 C 0.07 1.28 3.14 -26.61 -0.08 1.20 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 O -0.57 -9.45 13.16 -35.23 -0.46 -9.91 16 28 C 0.71 8.83 8.31 -88.02 -0.73 8.10 16 29 O -0.54 -8.55 17.15 5.33 0.09 -8.46 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.61 8.00 -51.93 -0.42 0.20 16 32 H 0.09 0.75 7.86 -51.93 -0.41 0.35 16 33 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.13 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.12 0.95 8.03 -51.93 -0.42 0.54 16 36 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.40 4.04 8.60 -40.82 -0.35 3.69 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 45 H 0.38 4.96 9.08 45.56 0.41 5.37 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -36.67 378.64 -7.14 -43.81 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.65 Total: 6.55 kcal Atomic # 6 Polarization: 24.20 SS G_CDS: -0.98 Total: 23.22 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -1.00 Total: -61.66 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.18 Total: -33.34 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.67 -7.14 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090720701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.355 kcal (2) G-P(sol) polarization free energy of solvation -36.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds