Wall clock time and date at job start Sat Apr 11 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28445 * 125.18596 * 2 1 4 4 C 1.30868 * 110.92615 * 180.31828 * 3 2 1 5 5 C 1.50696 * 126.06979 * 179.67484 * 4 3 2 6 6 F 1.39901 * 109.46868 * 30.04232 * 5 4 3 7 7 F 1.39898 * 109.46817 * 150.03715 * 5 4 3 8 8 C 1.39677 * 107.85800 * 359.71295 * 4 3 2 9 9 C 1.36597 * 125.19135 * 179.82979 * 2 1 3 10 10 C 1.47155 * 126.88500 * 359.96179 * 9 2 1 11 11 O 1.21631 * 120.00211 * 354.10066 * 10 9 2 12 12 N 1.34775 * 120.00095 * 174.10354 * 10 9 2 13 13 C 1.46498 * 120.00157 * 185.04170 * 12 10 9 14 14 H 1.08997 * 110.55883 * 41.14071 * 13 12 10 15 15 C 1.54853 * 110.62637 * 164.21204 * 13 12 10 16 16 C 1.55843 * 103.44660 * 118.49355 * 15 13 12 17 17 H 1.08997 * 115.56250 * 158.81726 * 16 15 13 18 18 C 1.55855 * 105.05962 * 288.17223 * 16 15 13 19 19 C 1.54848 * 103.44165 * 71.82834 * 18 16 15 20 20 C 1.55842 * 110.62827 * 278.23613 * 13 12 10 21 21 H 1.09004 * 115.55662 * 82.70223 * 20 13 12 22 22 N 1.50235 * 101.05314 * 32.93570 * 16 15 13 23 23 C 1.36932 * 130.84225 * 126.01161 * 22 16 15 24 24 H 1.07995 * 120.00620 * 180.02562 * 23 22 16 25 25 C 1.38814 * 119.99594 * 0.03305 * 23 22 16 26 26 N 1.31623 * 120.00338 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00084 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.47128 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47628 * 119.99607 * 27 25 23 30 30 H 1.48500 * 109.47538 * 239.99755 * 27 25 23 31 31 H 1.09001 * 109.46862 * 264.31823 * 1 2 3 32 32 H 1.08991 * 109.47592 * 24.32129 * 1 2 3 33 33 H 1.09003 * 109.47032 * 144.32679 * 1 2 3 34 34 H 1.08994 * 109.47383 * 270.03722 * 5 4 3 35 35 H 1.07997 * 127.31536 * 180.02562 * 8 4 3 36 36 H 0.96999 * 119.99627 * 5.03676 * 12 10 9 37 37 H 1.09002 * 110.62719 * 236.97974 * 15 13 12 38 38 H 1.08999 * 110.62848 * 0.02562 * 15 13 12 39 39 H 1.08997 * 110.62374 * 190.31327 * 18 16 15 40 40 H 1.08991 * 110.62790 * 313.17656 * 18 16 15 41 41 H 1.09008 * 110.62545 * 241.50899 * 19 18 16 42 42 H 1.08994 * 110.63168 * 118.48987 * 19 18 16 43 43 H 0.96993 * 120.00210 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0498 0.0000 4 6 3.4735 0.7274 -0.0068 5 6 4.6334 1.6894 -0.0159 6 9 4.2673 2.8675 0.6439 7 9 5.7257 1.1090 0.6377 8 6 3.5612 -0.6666 -0.0050 9 6 2.2523 -1.1163 0.0033 10 6 1.7994 -2.5164 0.0083 11 8 0.6154 -2.7723 0.1180 12 7 2.6966 -3.5153 -0.1088 13 6 2.2384 -4.9028 -0.2150 14 1 1.3670 -4.9693 -0.8664 15 6 3.3787 -5.8160 -0.7286 16 6 3.5897 -6.8245 0.4405 17 1 4.0778 -7.7612 0.1713 18 6 4.2705 -5.9964 1.5718 19 6 3.1302 -5.0833 2.0854 20 6 1.9159 -5.4839 1.1945 21 1 0.9296 -5.2399 1.5893 22 7 2.1903 -6.9444 0.9736 23 6 1.4060 -8.0457 1.1908 24 1 0.4080 -7.9285 1.5865 25 6 1.8939 -9.3129 0.9024 26 7 3.1101 -9.4559 0.4198 27 14 0.8244 -10.8154 1.1993 28 1 -0.4898 -10.3879 1.7429 29 1 0.6193 -11.5381 -0.0817 30 1 1.4935 -11.7147 2.1733 31 1 -0.3633 -0.1017 1.0226 32 1 -0.3634 0.9364 -0.4232 33 1 -0.3633 -0.8349 -0.5993 34 1 4.9066 1.9195 -1.0457 35 1 4.4595 -1.2661 -0.0088 36 1 3.6457 -3.3155 -0.1227 37 1 3.0736 -6.3379 -1.6356 38 1 4.2852 -5.2367 -0.9039 39 1 4.6252 -6.6519 2.3671 40 1 5.0913 -5.4015 1.1714 41 1 3.3837 -4.0332 1.9392 42 1 2.9194 -5.2858 3.1354 43 1 3.4508 -10.3413 0.2180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095752811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:32 Heat of formation + Delta-G solvation = -2.985795 kcal Electronic energy + Delta-G solvation = -30049.528225 eV Core-core repulsion = 25575.975539 eV Total energy + Delta-G solvation = -4473.552686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.22727 -47.25493 -42.92923 -40.04086 -38.30945 -34.53192 -33.74359 -32.46721 -31.31245 -29.32846 -29.10006 -28.99553 -27.58782 -25.52097 -24.45991 -23.39406 -21.80160 -21.13734 -20.20048 -19.57221 -18.76981 -18.17101 -17.85323 -17.39700 -16.94017 -16.51512 -16.43660 -16.19851 -15.19578 -15.13147 -14.82836 -14.39149 -14.15029 -14.11239 -13.82112 -13.71048 -13.58583 -13.35233 -12.97274 -12.75621 -12.42724 -12.35023 -11.85099 -11.77484 -11.57782 -11.22407 -11.09955 -10.97911 -10.94478 -10.88663 -10.28244 -10.13949 -10.07310 -9.84823 -9.60067 -9.49245 -9.42199 -9.31554 -8.98562 -8.64988 -6.96987 -5.77451 -3.15565 1.01105 1.89677 1.98533 3.08823 3.12433 3.36531 3.42357 3.44351 3.45816 3.80809 4.05121 4.39575 4.50749 4.62434 4.67694 4.90682 4.96147 5.09983 5.14212 5.26197 5.32806 5.35076 5.47122 5.71675 5.76908 5.88725 5.91925 5.99296 6.05632 6.19660 6.27561 6.28499 6.46230 6.52793 6.56373 6.74606 6.87960 6.93688 7.19961 7.45787 7.47846 7.61645 7.74574 8.10629 8.18444 9.05974 9.68487 10.47991 11.32260 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.022471 B = 0.002667 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.767846 B =10497.970686 C =11321.809221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.246 5.246 3 N -0.242 5.242 4 C -0.062 4.062 5 C 0.366 3.634 6 F -0.193 7.193 7 F -0.191 7.191 8 C -0.160 4.160 9 C -0.022 4.022 10 C 0.584 3.416 11 O -0.536 6.536 12 N -0.691 5.691 13 C 0.130 3.870 14 H 0.083 0.917 15 C -0.141 4.141 16 C 0.154 3.846 17 H 0.156 0.844 18 C -0.137 4.137 19 C -0.131 4.131 20 C 0.130 3.870 21 H 0.088 0.912 22 N -0.590 5.590 23 C -0.210 4.210 24 H 0.080 0.920 25 C -0.012 4.012 26 N -0.923 5.923 27 Si 0.917 3.083 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.130 0.870 35 H 0.169 0.831 36 H 0.399 0.601 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 20.169 -3.835 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.035 5.035 3 N -0.077 5.077 4 C -0.218 4.218 5 C 0.311 3.689 6 F -0.175 7.175 7 F -0.172 7.172 8 C -0.189 4.189 9 C -0.150 4.150 10 C 0.368 3.632 11 O -0.414 6.414 12 N -0.342 5.342 13 C 0.024 3.976 14 H 0.101 0.899 15 C -0.181 4.181 16 C 0.047 3.953 17 H 0.173 0.827 18 C -0.176 4.176 19 C -0.170 4.170 20 C 0.021 3.979 21 H 0.106 0.894 22 N -0.310 5.310 23 C -0.338 4.338 24 H 0.098 0.902 25 C -0.207 4.207 26 N -0.571 5.571 27 Si 0.747 3.253 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.187 0.813 36 H 0.234 0.766 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.352 20.514 -3.736 20.895 hybrid contribution 0.440 -1.169 0.346 1.296 sum 1.792 19.345 -3.390 19.722 Atomic orbital electron populations 1.22422 0.71540 1.05737 1.05576 1.45701 1.08242 1.01509 1.48013 1.73084 1.02711 1.13684 1.18239 1.22326 0.92730 0.94492 1.12285 1.19332 0.79562 0.76769 0.93237 1.93025 1.91995 1.48605 1.83824 1.93032 1.55059 1.84922 1.84227 1.21961 0.96447 0.93515 1.06952 1.21675 0.90749 0.90394 1.12203 1.16806 0.86156 0.82564 0.77705 1.90815 1.16234 1.84248 1.50099 1.46003 1.09168 1.06824 1.72196 1.22773 0.97902 0.76895 1.00004 0.89940 1.23317 0.95610 0.97869 1.01261 1.23786 0.86132 0.96814 0.88569 0.82741 1.23042 0.96117 0.97937 1.00527 1.22907 0.97332 0.97471 0.99316 1.23190 0.96282 0.85950 0.92519 0.89434 1.46502 1.12402 0.99000 1.73087 1.19107 0.95773 0.83404 1.35537 0.90228 1.24701 0.96917 0.97267 1.01822 1.69434 1.15798 1.21566 1.50315 0.85957 0.79245 0.82686 0.77368 1.20543 1.21759 1.21784 0.89067 0.88511 0.87117 0.85298 0.81322 0.76604 0.91319 0.92512 0.92587 0.93540 0.93135 0.92993 0.93564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.58 59.85 0.63 1.43 16 2 N -0.25 -2.96 3.75 -63.88 -0.24 -3.19 16 3 N -0.24 -2.96 11.84 33.64 0.40 -2.56 16 4 C -0.06 -0.67 6.84 -82.47 -0.56 -1.24 16 5 C 0.37 3.14 5.84 36.00 0.21 3.35 16 6 F -0.19 -2.06 17.28 2.25 0.04 -2.02 16 7 F -0.19 -1.82 17.06 2.25 0.04 -1.78 16 8 C -0.16 -1.70 10.13 -38.98 -0.40 -2.10 16 9 C -0.02 -0.27 6.96 -82.06 -0.57 -0.85 16 10 C 0.58 8.38 7.75 -12.64 -0.10 8.28 16 11 O -0.54 -9.14 14.77 5.25 0.08 -9.07 16 12 N -0.69 -9.45 3.57 -52.56 -0.19 -9.64 16 13 C 0.13 2.25 2.99 -65.44 -0.20 2.05 16 14 H 0.08 1.58 7.90 -51.93 -0.41 1.17 16 15 C -0.14 -2.48 6.21 -24.24 -0.15 -2.63 16 16 C 0.15 3.31 4.72 -62.80 -0.30 3.01 16 17 H 0.16 3.84 5.52 -51.93 -0.29 3.55 16 18 C -0.14 -2.54 6.44 -24.23 -0.16 -2.70 16 19 C -0.13 -2.35 6.32 -24.24 -0.15 -2.51 16 20 C 0.13 2.61 5.30 -62.80 -0.33 2.28 16 21 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 22 N -0.59 -14.19 2.99 -145.82 -0.44 -14.62 16 23 C -0.21 -5.65 10.59 -15.06 -0.16 -5.81 16 24 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 26 N -0.92 -25.53 10.47 55.49 0.58 -24.95 16 27 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 1.08 6.81 -51.93 -0.35 0.72 16 34 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.17 1.35 7.59 -52.49 -0.40 0.96 16 36 H 0.40 4.43 7.14 -40.82 -0.29 4.14 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 0.82 7.30 -51.93 -0.38 0.44 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.72 7.82 -51.93 -0.41 0.31 16 41 H 0.05 0.79 6.57 -51.92 -0.34 0.45 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -31.48 358.51 -7.04 -38.53 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.37 Total: 5.17 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.32 Total: 2.16 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.12 Total: -54.97 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.08 Total: -3.81 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.48 -7.04 -38.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095752811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.543 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds