Wall clock time and date at job start Sat Apr 11 2020 06:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36939 * 119.99726 * 2 1 4 4 H 1.08002 * 120.00303 * 37.85905 * 3 2 1 5 5 C 1.38813 * 119.99567 * 217.85899 * 3 2 1 6 6 N 1.31621 * 120.00099 * 25.82672 * 5 3 2 7 7 Si 1.86798 * 119.99835 * 205.82613 * 5 3 2 8 8 H 1.48503 * 109.47062 * 175.00374 * 7 5 3 9 9 H 1.48498 * 109.47423 * 295.00091 * 7 5 3 10 10 H 1.48500 * 109.47471 * 55.00657 * 7 5 3 11 11 C 1.46502 * 120.00190 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.47011 * 266.38562 * 11 2 1 13 13 H 1.08990 * 109.58801 * 298.63485 * 12 11 2 14 14 C 1.53192 * 109.58615 * 59.06431 * 12 11 2 15 15 C 1.53038 * 109.31310 * 174.41838 * 14 12 11 16 16 C 1.53042 * 109.54050 * 298.63555 * 15 14 12 17 17 C 1.53197 * 109.31204 * 61.36023 * 16 15 14 18 18 N 1.46925 * 108.77477 * 305.36809 * 17 16 15 19 19 C 1.34777 * 120.63036 * 233.62413 * 18 17 16 20 20 O 1.21275 * 120.00241 * 184.64314 * 19 18 17 21 21 C 1.50703 * 119.99682 * 4.64699 * 19 18 17 22 22 N 1.46503 * 109.46912 * 182.96096 * 21 19 18 23 23 C 1.35047 * 126.03593 * 124.23584 * 22 21 19 24 24 C 1.35367 * 107.72826 * 179.97438 * 23 22 21 25 25 Cl 1.73598 * 126.04587 * 180.02562 * 24 23 22 26 26 C 1.39929 * 107.90909 * 0.02562 * 24 23 22 27 27 N 1.30847 * 108.21090 * 359.71958 * 26 24 23 28 28 H 1.08998 * 109.46843 * 91.46539 * 1 2 3 29 29 H 1.09003 * 109.47252 * 211.46118 * 1 2 3 30 30 H 1.08996 * 109.47340 * 331.46919 * 1 2 3 31 31 H 0.97006 * 119.99692 * 5.57413 * 6 5 3 32 32 H 1.09004 * 109.46596 * 26.38576 * 11 2 1 33 33 H 1.08997 * 109.46943 * 146.38702 * 11 2 1 34 34 H 1.08995 * 109.49977 * 294.37253 * 14 12 11 35 35 H 1.08997 * 109.49967 * 54.46823 * 14 12 11 36 36 H 1.08999 * 109.46403 * 178.61668 * 15 14 12 37 37 H 1.09000 * 109.45236 * 58.64571 * 15 14 12 38 38 H 1.09005 * 109.49669 * 301.41775 * 16 15 14 39 39 H 1.08998 * 109.53002 * 181.33234 * 16 15 14 40 40 H 1.08998 * 109.58274 * 185.57798 * 17 16 15 41 41 H 1.09004 * 109.70237 * 65.22730 * 17 16 15 42 42 H 1.08997 * 109.47419 * 302.95856 * 21 19 18 43 43 H 1.09005 * 109.47427 * 62.96420 * 21 19 18 44 44 H 1.08003 * 126.13482 * 0.03284 * 23 22 21 45 45 H 1.08006 * 125.89215 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7801 2.0229 0.5740 5 6 3.3186 1.3124 -0.7378 6 7 3.5154 0.5527 -1.7945 7 14 4.6125 2.5608 -0.2310 8 1 5.8074 2.4162 -1.1009 9 1 4.0600 3.9319 -0.3730 10 1 4.9989 2.3269 1.1836 11 6 2.1976 -1.2687 0.0006 12 6 2.5313 -1.6642 1.4404 13 1 3.1669 -0.9020 1.8908 14 6 1.2371 -1.8011 2.2485 15 6 1.5666 -2.3307 3.6460 16 6 2.2122 -3.7134 3.5303 17 6 3.5175 -3.5983 2.7366 18 7 3.2314 -2.9560 1.4466 19 6 3.6039 -3.5407 0.2908 20 8 3.4380 -2.9626 -0.7623 21 6 4.2265 -4.9130 0.3071 22 7 4.6041 -5.2941 -1.0562 23 6 5.8362 -5.6669 -1.4644 24 6 5.7674 -5.9371 -2.7891 25 17 7.0826 -6.4587 -3.7949 26 6 4.4486 -5.7215 -3.2042 27 7 3.7498 -5.3417 -2.1653 28 1 -0.3633 -0.0263 -1.0273 29 1 -0.3634 -0.8766 0.5364 30 1 -0.3634 0.9028 0.4908 31 1 2.8112 -0.0376 -2.1053 32 1 1.5819 -2.0439 -0.4558 33 1 3.1204 -1.1557 -0.5684 34 1 0.7561 -0.8266 2.3328 35 1 0.5655 -2.4964 1.7450 36 1 0.6502 -2.4057 4.2314 37 1 2.2578 -1.6475 4.1395 38 1 1.5315 -4.3908 3.0146 39 1 2.4252 -4.1006 4.5267 40 1 3.9304 -4.5926 2.5663 41 1 4.2346 -2.9955 3.2940 42 1 5.1137 -4.9021 0.9402 43 1 3.5086 -5.6331 0.6999 44 1 6.7181 -5.7377 -0.8450 45 1 4.0715 -5.8514 -4.2079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158539850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:04 Heat of formation + Delta-G solvation = 60.647646 kcal Electronic energy + Delta-G solvation = -28802.629404 eV Core-core repulsion = 24883.632751 eV Total energy + Delta-G solvation = -3918.996653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.37181 -41.37160 -38.53532 -37.51033 -37.35128 -34.66109 -33.72745 -33.48111 -32.14279 -31.02370 -28.91875 -27.97368 -27.28487 -25.61755 -24.02771 -22.98579 -22.28219 -22.03660 -21.58670 -20.02338 -19.39219 -18.43210 -17.84135 -17.18216 -16.58669 -16.25878 -15.88513 -15.68180 -15.49522 -15.46487 -15.37200 -15.14833 -14.91217 -14.66056 -14.41969 -14.27352 -14.11455 -13.94567 -13.34934 -13.22122 -12.99341 -12.86332 -12.68189 -12.63485 -12.34514 -12.33828 -11.97649 -11.92568 -11.87896 -11.63997 -11.45960 -11.43327 -11.33159 -10.78411 -10.47274 -10.15847 -9.50803 -9.40231 -8.83899 -8.10265 -5.54576 0.68061 0.99514 1.50727 1.59000 1.60333 1.62195 1.76899 1.78434 2.02157 2.63575 3.20073 3.36270 3.62042 3.70091 3.81458 3.88699 3.95502 4.00596 4.03232 4.09503 4.15773 4.35071 4.45755 4.51006 4.57616 4.59394 4.61636 4.68714 4.78089 4.86711 4.89481 5.00237 5.05956 5.11305 5.22982 5.25802 5.33901 5.46768 5.52401 5.80529 5.87105 5.90895 6.34714 6.49377 6.54093 7.09696 7.28416 7.79970 8.24772 8.94250 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009799 B = 0.004101 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.879076 B = 6825.426744 C = 8506.815640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.619 5.619 3 C -0.368 4.368 4 H 0.043 0.957 5 C -0.067 4.067 6 N -0.920 5.920 7 Si 1.110 2.890 8 H -0.294 1.294 9 H -0.272 1.272 10 H -0.273 1.273 11 C 0.161 3.839 12 C 0.143 3.857 13 H 0.043 0.957 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.095 3.905 18 N -0.605 5.605 19 C 0.475 3.525 20 O -0.545 6.545 21 C 0.122 3.878 22 N -0.358 5.358 23 C 0.082 3.918 24 C -0.201 4.201 25 Cl -0.039 7.039 26 C 0.046 3.954 27 N -0.299 5.299 28 H -0.018 1.018 29 H 0.051 0.949 30 H 0.041 0.959 31 H 0.249 0.751 32 H 0.007 0.993 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.174 0.826 43 H 0.146 0.854 44 H 0.225 0.775 45 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.103 -18.657 12.780 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.344 5.344 3 C -0.498 4.498 4 H 0.061 0.939 5 C -0.266 4.266 6 N -0.559 5.559 7 Si 0.934 3.066 8 H -0.221 1.221 9 H -0.198 1.198 10 H -0.199 1.199 11 C 0.036 3.964 12 C 0.037 3.963 13 H 0.061 0.939 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.164 4.164 17 C -0.026 4.026 18 N -0.341 5.341 19 C 0.262 3.738 20 O -0.421 6.421 21 C -0.002 4.002 22 N -0.141 5.141 23 C -0.065 4.065 24 C -0.240 4.240 25 Cl -0.011 7.011 26 C -0.141 4.141 27 N -0.120 5.120 28 H 0.000 1.000 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.192 0.808 43 H 0.164 0.836 44 H 0.241 0.759 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 5.400 -17.426 12.366 22.040 hybrid contribution -1.199 -0.241 -0.863 1.496 sum 4.201 -17.667 11.504 21.496 Atomic orbital electron populations 1.21185 0.85038 0.99475 0.96456 1.44332 1.00970 1.02709 1.86418 1.19994 1.10353 0.92668 1.26764 0.93916 1.27369 1.03280 1.03416 0.92552 1.70861 1.37275 1.26988 1.20770 0.82971 0.73808 0.73999 0.75824 1.22057 1.19771 1.19852 1.21356 0.97397 0.84157 0.93487 1.21673 0.92990 0.83105 0.98529 0.93881 1.21790 0.95790 1.00613 0.96712 1.21539 1.01568 0.97588 0.94706 1.21905 0.96212 0.96440 1.01844 1.22214 0.98414 0.99531 0.82430 1.48368 1.57544 1.21322 1.06820 1.21420 0.79684 0.88733 0.84000 1.90971 1.54372 1.63883 1.32863 1.21995 1.05843 0.93535 0.78823 1.48079 1.06617 1.51084 1.08279 1.22845 0.90392 0.98005 0.95233 1.20862 0.91033 1.19392 0.92669 1.98308 1.45465 1.89524 1.67765 1.24228 0.91662 0.98638 0.99576 1.77597 1.18870 1.21865 0.93634 0.99975 0.93092 0.94062 0.94115 0.97422 0.90596 0.92479 0.93424 0.90470 0.91930 0.91612 0.87192 0.86015 0.90156 0.80848 0.83617 0.75860 0.78399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.86 9.73 127.77 1.24 7.11 16 2 N -0.62 -34.04 2.24 -726.92 -1.63 -35.67 16 3 C -0.37 -21.95 9.36 84.03 0.79 -21.16 16 4 H 0.04 2.54 7.95 -2.91 -0.02 2.52 16 5 C -0.07 -4.09 4.87 84.86 0.41 -3.68 16 6 N -0.92 -61.40 12.26 21.65 0.27 -61.14 16 7 Si 1.11 53.49 29.99 68.60 2.06 55.55 16 8 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 C 0.16 8.42 2.86 86.38 0.25 8.67 16 12 C 0.14 5.69 3.20 44.98 0.14 5.83 16 13 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.11 -3.60 4.02 30.67 0.12 -3.48 16 15 C -0.12 -2.51 5.88 30.62 0.18 -2.33 16 16 C -0.13 -1.84 6.08 30.67 0.19 -1.65 16 17 C 0.10 1.52 6.33 86.36 0.55 2.06 16 18 N -0.61 -18.11 2.97 -795.02 -2.36 -20.48 16 19 C 0.47 15.91 7.58 87.66 0.66 16.57 16 20 O -0.55 -26.33 11.22 -3.02 -0.03 -26.36 16 21 C 0.12 2.40 5.36 85.63 0.46 2.86 16 22 N -0.36 -9.60 3.41 -351.65 -1.20 -10.80 16 23 C 0.08 1.81 11.43 83.54 0.95 2.76 16 24 C -0.20 -5.14 6.65 22.02 0.15 -5.00 16 25 Cl -0.04 -0.86 29.30 -2.72 -0.08 -0.94 16 26 C 0.05 1.38 12.02 85.25 1.02 2.41 16 27 N -0.30 -10.36 11.64 -56.97 -0.66 -11.03 16 28 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H 0.05 2.10 6.38 -2.39 -0.02 2.09 16 30 H 0.04 1.85 8.03 -2.39 -0.02 1.83 16 31 H 0.25 17.66 7.20 -92.70 -0.67 16.99 16 32 H 0.01 0.41 7.13 -2.38 -0.02 0.39 16 33 H 0.08 4.66 3.59 -2.39 -0.01 4.65 16 34 H 0.06 2.10 6.76 -2.39 -0.02 2.09 16 35 H 0.05 1.59 7.87 -2.39 -0.02 1.57 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.12 0.83 5.92 -2.39 -0.01 0.82 16 41 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.17 1.52 7.52 -2.39 -0.02 1.50 16 43 H 0.15 1.94 8.00 -2.38 -0.02 1.92 16 44 H 0.22 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.20 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -90.29 369.18 4.58 -85.71 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.10 Total: 14.17 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 7.12 Total: 10.97 kcal Atomic # 7 Polarization: -133.52 SS G_CDS: -5.59 Total: -139.10 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.03 Total: -26.36 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 2.06 Total: 55.55 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -90.29 4.58 -85.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158539850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.361 kcal (2) G-P(sol) polarization free energy of solvation -90.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds