Wall clock time and date at job start Sat Apr 11 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46726 * 2 1 4 4 C 1.42904 * 113.99907 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47147 * 180.02562 * 4 3 2 6 6 C 1.38112 * 120.82064 * 5.08461 * 5 4 3 7 7 N 1.32539 * 119.21662 * 180.28224 * 6 5 4 8 8 C 1.31917 * 120.99654 * 359.72421 * 7 6 5 9 9 Cl 1.73600 * 119.10429 * 180.02562 * 8 7 6 10 10 N 1.31872 * 121.79568 * 0.02562 * 8 7 6 11 11 C 1.32987 * 120.67401 * 359.97438 * 10 8 7 12 12 N 1.38541 * 120.51960 * 180.02562 * 11 10 8 13 13 C 1.46956 * 111.00143 * 295.11169 * 12 11 10 14 14 C 1.53053 * 109.36151 * 183.19204 * 13 12 11 15 15 N 1.46952 * 109.36562 * 301.59882 * 14 13 12 16 16 C 1.46901 * 110.99736 * 183.19217 * 15 14 13 17 17 C 1.50702 * 109.46717 * 170.00105 * 16 15 14 18 18 H 1.08002 * 120.00486 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99775 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99900 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00014 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47005 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47229 * 120.00106 * 21 19 17 24 24 H 1.48496 * 109.47374 * 240.00075 * 21 19 17 25 25 C 1.46956 * 110.88136 * 59.32290 * 15 14 13 26 26 C 1.46954 * 111.00131 * 58.91873 * 12 11 10 27 27 H 1.09000 * 109.47044 * 299.99734 * 1 2 3 28 28 H 1.08997 * 109.47366 * 59.99850 * 1 2 3 29 29 H 1.09001 * 109.46795 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47044 * 240.00266 * 2 1 3 31 31 H 1.08992 * 109.47057 * 119.99801 * 2 1 3 32 32 H 1.09002 * 109.47027 * 59.99780 * 4 3 2 33 33 H 1.09002 * 109.47017 * 299.99659 * 4 3 2 34 34 H 1.08005 * 120.39185 * 0.02562 * 6 5 4 35 35 H 1.08996 * 109.48704 * 63.22336 * 13 12 11 36 36 H 1.09000 * 109.50559 * 303.17184 * 13 12 11 37 37 H 1.09005 * 109.48468 * 181.62947 * 14 13 12 38 38 H 1.08995 * 109.48843 * 61.57373 * 14 13 12 39 39 H 1.08997 * 109.47321 * 289.99666 * 16 15 14 40 40 H 1.08997 * 109.47086 * 50.00200 * 16 15 14 41 41 H 0.97001 * 119.99639 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.48387 * 60.64526 * 25 15 14 43 43 H 1.08996 * 109.49201 * 180.70789 * 25 15 14 44 44 H 1.09002 * 109.48928 * 296.77156 * 26 12 11 45 45 H 1.09002 * 109.49318 * 56.81814 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9163 0.0001 6 6 2.8604 3.9045 0.1062 7 7 3.2371 5.1752 0.0979 8 6 4.5101 5.5056 -0.0046 9 17 4.9486 7.1853 -0.0099 10 7 5.4587 4.5948 -0.1031 11 6 5.1581 3.2994 -0.1017 12 7 6.1573 2.3452 -0.2048 13 6 6.8318 2.4276 -1.5078 14 6 7.8714 1.3093 -1.6126 15 7 8.8381 1.4381 -0.5133 16 6 9.8975 0.4263 -0.6226 17 6 10.9927 0.7371 0.3647 18 1 10.9100 1.5996 1.0094 19 6 12.1001 -0.0805 0.4459 20 7 12.2002 -1.1317 -0.3380 21 14 13.4574 0.3043 1.6702 22 1 13.1057 1.5310 2.4298 23 1 13.6115 -0.8333 2.6122 24 1 14.7336 0.5209 0.9427 25 6 8.1636 1.3557 0.7897 26 6 7.1239 2.4739 0.8946 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8333 0.9768 -0.8908 33 1 3.8340 0.9766 0.8892 34 1 1.8154 3.6449 0.1909 35 1 7.3268 3.3943 -1.6005 36 1 6.0972 2.3173 -2.3055 37 1 8.3932 1.3861 -2.5666 38 1 7.3730 0.3422 -1.5473 39 1 9.4830 -0.5586 -0.4073 40 1 10.3059 0.4356 -1.6332 41 1 12.9794 -1.7066 -0.2811 42 1 7.6685 0.3890 0.8824 43 1 8.8983 1.4662 1.5872 44 1 7.6223 3.4411 0.8292 45 1 6.6021 2.3975 1.8486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165057047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:20 Heat of formation + Delta-G solvation = 17.734733 kcal Electronic energy + Delta-G solvation = -27426.168134 eV Core-core repulsion = 23505.310638 eV Total energy + Delta-G solvation = -3920.857496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60050 -38.89252 -38.36487 -37.04125 -35.68445 -33.65645 -33.04365 -32.14464 -30.99886 -30.66505 -28.10358 -26.79434 -25.55865 -23.68841 -23.22283 -22.97984 -22.77730 -21.54193 -19.57266 -18.27964 -18.02066 -16.59674 -16.52314 -16.36291 -15.84036 -15.64807 -15.61309 -14.73008 -14.59995 -14.41829 -14.28837 -13.94852 -13.92073 -13.59192 -13.28518 -13.03107 -12.77932 -12.21043 -12.16815 -11.92821 -11.70483 -11.66135 -11.61974 -11.40776 -11.25051 -11.20058 -10.93105 -10.85581 -10.66619 -10.52384 -10.46675 -10.13519 -9.88123 -9.61765 -9.25490 -9.22684 -8.82692 -8.47598 -7.33483 -6.07108 -4.08583 0.42463 0.68783 1.22897 3.11377 3.27479 3.28467 3.36281 3.36780 3.41016 3.92209 4.36895 4.38796 4.52032 4.64933 4.72560 4.80379 4.82312 4.96349 5.07653 5.19459 5.20294 5.28344 5.28684 5.36005 5.49075 5.52077 5.57656 5.66302 5.76571 5.77468 5.80801 5.89304 5.99071 6.26067 6.45476 6.49847 6.57427 6.75738 6.82620 6.96851 7.22314 7.27363 7.57946 7.74458 8.00994 8.11588 8.47343 8.99139 9.56108 11.03741 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.002985 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.724933 B = 9378.249391 C =11450.813277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.396 6.396 4 C 0.127 3.873 5 C -0.166 4.166 6 C 0.184 3.816 7 N -0.513 5.513 8 C 0.370 3.630 9 Cl 0.019 6.981 10 N -0.526 5.526 11 C 0.372 3.628 12 N -0.488 5.488 13 C 0.065 3.935 14 C 0.059 3.941 15 N -0.537 5.537 16 C 0.194 3.806 17 C -0.508 4.508 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.070 3.930 26 C 0.061 3.939 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.188 0.812 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.033 0.967 39 H -0.007 1.007 40 H 0.031 0.969 41 H 0.261 0.739 42 H 0.031 0.969 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.826 5.883 0.007 23.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.016 4.016 3 O -0.315 6.315 4 C 0.050 3.950 5 C -0.172 4.172 6 C 0.019 3.981 7 N -0.230 5.230 8 C 0.075 3.925 9 Cl 0.047 6.953 10 N -0.246 5.246 11 C 0.135 3.865 12 N -0.212 5.212 13 C -0.062 4.062 14 C -0.070 4.070 15 N -0.263 5.263 16 C 0.070 3.930 17 C -0.547 4.547 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.059 4.059 26 C -0.065 4.065 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.205 0.795 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.011 0.989 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.111 0.889 44 H 0.081 0.919 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.495 6.994 -0.046 23.557 hybrid contribution 0.883 -0.827 0.581 1.342 sum -21.611 6.167 0.535 22.480 Atomic orbital electron populations 1.21754 0.93626 1.02392 1.03121 1.22463 0.95480 0.83030 1.00640 1.87733 1.20762 1.27337 1.95705 1.20837 0.80855 0.90799 1.02518 1.21234 0.93378 0.98174 1.04390 1.23044 1.01105 0.85080 0.88827 1.67982 1.17757 1.21436 1.15793 1.22849 0.85584 0.89319 0.94792 1.98437 1.92269 1.08515 1.96073 1.68133 1.38558 1.02078 1.15879 1.20015 0.91627 0.85928 0.88949 1.60524 1.13892 1.40746 1.06057 1.22288 0.95746 1.00577 0.87566 1.22066 0.92622 0.95580 0.96772 1.62290 1.10969 1.52817 1.00204 1.19712 0.87962 0.87356 0.98013 1.21183 1.03079 1.10640 1.19750 0.91809 1.24987 0.98365 0.95022 0.96197 1.69966 1.29606 1.15365 1.38819 0.86455 0.81813 0.78240 0.81004 1.19632 1.21117 1.20995 1.22002 0.94482 0.95022 0.94396 1.22379 0.91986 1.00866 0.91297 0.91820 0.91821 0.91002 0.92991 0.92991 0.90564 0.90645 0.79543 0.92068 0.91036 0.90293 0.94873 0.98945 0.95081 0.92948 0.95054 0.88852 0.91939 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.42 6.66 37.16 0.25 0.67 16 3 O -0.40 -3.56 8.94 -35.23 -0.31 -3.88 16 4 C 0.13 1.23 5.84 36.01 0.21 1.44 16 5 C -0.17 -1.90 5.93 -104.15 -0.62 -2.52 16 6 C 0.18 2.03 10.62 -17.29 -0.18 1.85 16 7 N -0.51 -6.60 10.40 -11.72 -0.12 -6.73 16 8 C 0.37 5.09 8.18 -91.98 -0.75 4.34 16 9 Cl 0.02 0.24 29.27 -51.86 -1.52 -1.28 16 10 N -0.53 -7.74 9.78 -10.87 -0.11 -7.85 16 11 C 0.37 5.04 5.33 -154.78 -0.83 4.22 16 12 N -0.49 -6.91 4.14 -172.87 -0.72 -7.62 16 13 C 0.06 0.95 5.47 -3.77 -0.02 0.93 16 14 C 0.06 1.00 5.61 -3.77 -0.02 0.98 16 15 N -0.54 -11.09 4.70 -235.91 -1.11 -12.20 16 16 C 0.19 4.88 4.72 -4.97 -0.02 4.86 16 17 C -0.51 -13.87 8.47 -34.44 -0.29 -14.16 16 18 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.07 1.28 5.43 -3.77 -0.02 1.26 16 26 C 0.06 0.95 5.42 -3.77 -0.02 0.93 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.19 1.64 7.13 -52.48 -0.37 1.27 16 35 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 36 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 37 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H -0.01 -0.19 8.12 -51.93 -0.42 -0.62 16 40 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 1.85 6.79 -51.93 -0.35 1.50 16 44 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 45 H 0.07 1.00 8.13 -51.93 -0.42 0.57 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -29.84 383.89 -11.39 -41.23 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -6.97 Total: -4.07 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -2.03 Total: 5.76 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -1.32 Total: -59.83 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: -0.31 Total: -3.88 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.52 Total: -1.28 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.84 -11.39 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165057047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.965 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds