Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42898 * 109.46726 * 2 1 4 4 C 1.42904 * 113.99907 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47147 * 180.02562 * 4 3 2 6 6 C 1.38112 * 120.82064 * 5.08461 * 5 4 3 7 7 N 1.32539 * 119.21662 * 180.28224 * 6 5 4 8 8 C 1.31917 * 120.99654 * 359.72421 * 7 6 5 9 9 Cl 1.73600 * 119.10429 * 180.02562 * 8 7 6 10 10 N 1.31872 * 121.79568 * 0.02562 * 8 7 6 11 11 C 1.32987 * 120.67401 * 359.97438 * 10 8 7 12 12 N 1.38541 * 120.51960 * 180.02562 * 11 10 8 13 13 C 1.46956 * 111.00143 * 295.11169 * 12 11 10 14 14 C 1.53053 * 109.36151 * 183.19204 * 13 12 11 15 15 N 1.46952 * 109.36562 * 301.59882 * 14 13 12 16 16 C 1.46901 * 110.99736 * 183.19217 * 15 14 13 17 17 C 1.50702 * 109.46717 * 170.00105 * 16 15 14 18 18 H 1.08002 * 120.00486 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99775 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99900 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00014 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47005 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47229 * 120.00106 * 21 19 17 24 24 H 1.48496 * 109.47374 * 240.00075 * 21 19 17 25 25 C 1.46956 * 110.88136 * 59.32290 * 15 14 13 26 26 C 1.46954 * 111.00131 * 58.91873 * 12 11 10 27 27 H 1.09000 * 109.47044 * 299.99734 * 1 2 3 28 28 H 1.08997 * 109.47366 * 59.99850 * 1 2 3 29 29 H 1.09001 * 109.46795 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47044 * 240.00266 * 2 1 3 31 31 H 1.08992 * 109.47057 * 119.99801 * 2 1 3 32 32 H 1.09002 * 109.47027 * 59.99780 * 4 3 2 33 33 H 1.09002 * 109.47017 * 299.99659 * 4 3 2 34 34 H 1.08005 * 120.39185 * 0.02562 * 6 5 4 35 35 H 1.08996 * 109.48704 * 63.22336 * 13 12 11 36 36 H 1.09000 * 109.50559 * 303.17184 * 13 12 11 37 37 H 1.09005 * 109.48468 * 181.62947 * 14 13 12 38 38 H 1.08995 * 109.48843 * 61.57373 * 14 13 12 39 39 H 1.08997 * 109.47321 * 289.99666 * 16 15 14 40 40 H 1.08997 * 109.47086 * 50.00200 * 16 15 14 41 41 H 0.97001 * 119.99639 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.48387 * 60.64526 * 25 15 14 43 43 H 1.08996 * 109.49201 * 180.70789 * 25 15 14 44 44 H 1.09002 * 109.48928 * 296.77156 * 26 12 11 45 45 H 1.09002 * 109.49318 * 56.81814 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8194 2.9163 0.0001 6 6 2.8604 3.9045 0.1062 7 7 3.2371 5.1752 0.0979 8 6 4.5101 5.5056 -0.0046 9 17 4.9486 7.1853 -0.0099 10 7 5.4587 4.5948 -0.1031 11 6 5.1581 3.2994 -0.1017 12 7 6.1573 2.3452 -0.2048 13 6 6.8318 2.4276 -1.5078 14 6 7.8714 1.3093 -1.6126 15 7 8.8381 1.4381 -0.5133 16 6 9.8975 0.4263 -0.6226 17 6 10.9927 0.7371 0.3647 18 1 10.9100 1.5996 1.0094 19 6 12.1001 -0.0805 0.4459 20 7 12.2002 -1.1317 -0.3380 21 14 13.4574 0.3043 1.6702 22 1 13.1057 1.5310 2.4298 23 1 13.6115 -0.8333 2.6122 24 1 14.7336 0.5209 0.9427 25 6 8.1636 1.3557 0.7897 26 6 7.1239 2.4739 0.8946 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8333 0.9768 -0.8908 33 1 3.8340 0.9766 0.8892 34 1 1.8154 3.6449 0.1909 35 1 7.3268 3.3943 -1.6005 36 1 6.0972 2.3173 -2.3055 37 1 8.3932 1.3861 -2.5666 38 1 7.3730 0.3422 -1.5473 39 1 9.4830 -0.5586 -0.4073 40 1 10.3059 0.4356 -1.6332 41 1 12.9794 -1.7066 -0.2811 42 1 7.6685 0.3890 0.8824 43 1 8.8983 1.4662 1.5872 44 1 7.6223 3.4411 0.8292 45 1 6.6021 2.3975 1.8486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165057047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = -1.291024 kcal Electronic energy + Delta-G solvation = -27426.993153 eV Core-core repulsion = 23505.310638 eV Total energy + Delta-G solvation = -3921.682515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61322 -40.19856 -39.04156 -38.02698 -37.10783 -34.86469 -34.49704 -33.47820 -32.03369 -31.67984 -29.78194 -27.67977 -27.16954 -24.91690 -24.55034 -23.75908 -23.58091 -23.24584 -20.94617 -19.25811 -19.13006 -18.48332 -17.35152 -17.26669 -16.93099 -16.62466 -16.60007 -16.36327 -15.92108 -15.76351 -15.56167 -15.26440 -15.20595 -14.54281 -14.53499 -14.02019 -13.91583 -13.47729 -13.21630 -13.18387 -12.99698 -12.79517 -12.65932 -12.60404 -12.36038 -12.34366 -12.30048 -12.27846 -12.18861 -12.02964 -11.79383 -11.66399 -11.23210 -10.80551 -10.64864 -10.61805 -10.14183 -10.01631 -9.04225 -8.20429 -6.29773 -0.56056 -0.27918 0.25641 1.40854 1.42347 1.55108 2.19202 2.29082 2.40388 2.47270 2.96505 3.12057 3.23386 3.40557 3.63720 3.71255 3.85339 4.05326 4.13742 4.17811 4.25045 4.30143 4.40913 4.43875 4.47770 4.51712 4.59218 4.60343 4.69682 4.86610 4.93423 4.96450 4.97684 5.03359 5.12279 5.20776 5.25669 5.35065 5.51975 5.57408 5.64725 5.82558 6.04933 6.18081 6.30157 6.59218 6.60131 6.86089 7.39965 8.90706 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.002985 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.724933 B = 9378.249391 C =11450.813277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.402 6.402 4 C 0.132 3.868 5 C -0.153 4.153 6 C 0.190 3.810 7 N -0.517 5.517 8 C 0.358 3.642 9 Cl 0.025 6.975 10 N -0.547 5.547 11 C 0.356 3.644 12 N -0.479 5.479 13 C 0.076 3.924 14 C 0.060 3.940 15 N -0.549 5.549 16 C 0.211 3.789 17 C -0.522 4.522 18 H 0.061 0.939 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.280 1.280 25 C 0.075 3.925 26 C 0.076 3.924 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.212 0.788 35 H 0.046 0.954 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.037 0.963 39 H -0.032 1.032 40 H 0.006 0.994 41 H 0.264 0.736 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.046 0.954 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.485 6.133 0.687 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.322 6.322 4 C 0.055 3.945 5 C -0.159 4.159 6 C 0.026 3.974 7 N -0.234 5.234 8 C 0.063 3.937 9 Cl 0.053 6.947 10 N -0.267 5.267 11 C 0.120 3.880 12 N -0.203 5.203 13 C -0.051 4.051 14 C -0.068 4.068 15 N -0.274 5.274 16 C 0.085 3.915 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.194 4.194 20 N -0.573 5.573 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.206 1.206 25 C -0.054 4.054 26 C -0.051 4.051 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.229 0.771 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.055 0.945 39 H -0.015 1.015 40 H 0.024 0.976 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -24.181 7.255 0.634 25.254 hybrid contribution 1.289 -0.912 0.337 1.615 sum -22.891 6.343 0.970 23.773 Atomic orbital electron populations 1.21762 0.92631 1.03316 1.02941 1.22651 0.96295 0.82168 1.01152 1.87716 1.20071 1.28629 1.95775 1.20779 0.81525 0.89424 1.02778 1.21371 0.92387 0.99334 1.02827 1.23468 1.02066 0.84315 0.87565 1.68045 1.17259 1.22367 1.15733 1.22965 0.85791 0.89593 0.95381 1.98433 1.92299 1.07936 1.96061 1.68047 1.39372 1.02724 1.16593 1.20011 0.91984 0.85534 0.90475 1.60483 1.13384 1.41193 1.05258 1.22150 0.95577 0.98492 0.88838 1.22105 0.92464 0.96845 0.95436 1.62181 1.11816 1.51037 1.02363 1.19331 0.88922 0.87270 0.95975 1.21475 1.03921 1.10530 1.20069 0.92053 1.25854 1.00803 0.94777 0.97993 1.70080 1.30513 1.16351 1.40393 0.85387 0.78560 0.78342 0.78655 1.18886 1.20351 1.20586 1.21921 0.94597 0.96249 0.92623 1.22149 0.91613 0.98477 0.92882 0.91938 0.92030 0.89581 0.92532 0.92461 0.90289 0.90259 0.77126 0.93603 0.88433 0.90352 0.94472 1.01472 0.97615 0.92692 0.95060 0.90744 0.93565 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 71.98 0.74 -0.61 16 2 C 0.05 0.62 6.66 71.98 0.48 1.10 16 3 O -0.40 -6.16 8.94 -148.98 -1.33 -7.49 16 4 C 0.13 2.22 5.84 71.24 0.42 2.64 16 5 C -0.15 -3.16 5.93 -19.56 -0.12 -3.27 16 6 C 0.19 3.73 10.62 84.56 0.90 4.62 16 7 N -0.52 -12.35 10.40 -190.99 -1.99 -14.33 16 8 C 0.36 9.41 8.18 180.82 1.48 10.89 16 9 Cl 0.02 0.59 29.27 -2.72 -0.08 0.51 16 10 N -0.55 -15.48 9.78 -188.32 -1.84 -17.32 16 11 C 0.36 9.06 5.33 133.16 0.71 9.77 16 12 N -0.48 -12.92 4.14 -700.83 -2.90 -15.82 16 13 C 0.08 2.15 5.47 86.31 0.47 2.62 16 14 C 0.06 2.04 5.61 86.31 0.48 2.52 16 15 N -0.55 -23.08 4.70 -900.29 -4.23 -27.31 16 16 C 0.21 10.97 4.72 85.56 0.40 11.37 16 17 C -0.52 -29.05 8.47 25.60 0.22 -28.83 16 18 H 0.06 3.38 7.13 -2.91 -0.02 3.36 16 19 C 0.00 0.22 5.46 84.66 0.46 0.68 16 20 N -0.93 -55.27 13.29 21.45 0.28 -54.99 16 21 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 C 0.07 2.76 5.43 86.31 0.47 3.23 16 26 C 0.08 2.29 5.42 86.31 0.47 2.75 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.21 3.03 7.13 -2.91 -0.02 3.01 16 35 H 0.05 1.46 8.04 -2.39 -0.02 1.44 16 36 H 0.10 2.29 8.13 -2.39 -0.02 2.27 16 37 H 0.08 2.64 8.07 -2.38 -0.02 2.62 16 38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 39 H -0.03 -1.81 8.12 -2.39 -0.02 -1.83 16 40 H 0.01 0.32 8.03 -2.39 -0.02 0.30 16 41 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 3.01 6.79 -2.39 -0.02 3.00 16 44 H 0.05 1.57 7.94 -2.39 -0.02 1.55 16 45 H 0.09 2.42 8.13 -2.39 -0.02 2.40 16 Total: -1.00 -64.28 383.89 -1.50 -65.78 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 0.98 Total: 5.59 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 7.58 Total: 19.48 kcal Atomic # 7 Polarization: -119.09 SS G_CDS: -10.68 Total: -129.77 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -1.33 Total: -7.49 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.08 Total: 0.51 kcal Total: -64.28 -1.50 -65.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165057047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.491 kcal (2) G-P(sol) polarization free energy of solvation -64.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds