Wall clock time and date at job start Sat Apr 11 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 113.99968 * 2 1 4 4 C 1.50702 * 109.47101 * 179.97438 * 3 2 1 5 5 C 1.35315 * 126.66451 * 90.28312 * 4 3 2 6 6 C 1.42270 * 103.92336 * 180.08740 * 5 4 3 7 7 C 1.48326 * 126.94185 * 179.90952 * 6 5 4 8 8 O 1.21494 * 119.99985 * 359.71397 * 7 6 5 9 9 N 1.34784 * 120.00252 * 179.71394 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72903 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47182 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.46696 * 179.97438 * 12 11 10 14 14 C 1.46907 * 110.99618 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.46927 * 180.02562 * 14 13 12 16 16 O 1.21288 * 120.00214 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00122 * 180.02562 * 15 14 13 18 18 C 1.37088 * 120.00485 * 180.02562 * 17 15 14 19 19 H 1.08006 * 120.00020 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00546 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99611 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00299 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47133 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46676 * 120.00453 * 22 20 18 25 25 H 1.48501 * 109.47421 * 239.99882 * 22 20 18 26 26 N 1.30992 * 106.12221 * 359.65502 * 6 5 4 27 27 O 1.20902 * 111.43743 * 0.22153 * 26 6 5 28 28 H 1.09004 * 109.46875 * 60.00210 * 1 2 3 29 29 H 1.08996 * 109.47249 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47184 * 300.00169 * 1 2 3 31 31 H 1.09003 * 109.47099 * 60.00199 * 3 2 1 32 32 H 1.08998 * 109.47093 * 299.99548 * 3 2 1 33 33 H 1.08002 * 128.04093 * 359.97438 * 5 4 3 34 34 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 35 35 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 36 36 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 37 37 H 1.09007 * 109.46593 * 299.99743 * 11 10 9 38 38 H 1.08993 * 109.47372 * 59.99485 * 11 10 9 39 39 H 1.08993 * 109.47057 * 299.99535 * 12 11 10 40 40 H 1.09001 * 109.47095 * 59.99863 * 12 11 10 41 41 H 1.00894 * 111.00142 * 56.04826 * 13 12 11 42 42 H 1.08999 * 109.47052 * 300.00136 * 14 13 12 43 43 H 1.08999 * 109.46905 * 59.99941 * 14 13 12 44 44 H 0.97005 * 119.99393 * 359.97438 * 17 15 14 45 45 H 0.97010 * 119.99825 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.3189 1.1278 -1.0844 6 6 5.6263 1.0195 -0.5339 7 6 6.9031 0.9192 -1.2821 8 8 6.8968 0.9196 -2.4970 9 7 8.0702 0.8276 -0.6142 10 6 9.3307 0.7226 -1.3532 11 6 10.4952 0.6319 -0.3650 12 6 11.8117 0.5216 -1.1369 13 7 12.9298 0.4351 -0.1879 14 6 14.2131 0.3284 -0.8949 15 6 15.3338 0.2413 0.1088 16 8 15.0877 0.2662 1.2962 17 7 16.6096 0.1368 -0.3129 18 6 17.6291 0.0570 0.6001 19 1 17.4100 0.0784 1.6575 20 6 18.9443 -0.0513 0.1654 21 7 19.2110 -0.0768 -1.1212 22 14 20.3335 -0.1592 1.4095 23 1 19.7724 -0.1091 2.7835 24 1 21.0682 -1.4360 1.2215 25 1 21.2643 0.9810 1.2125 26 7 5.4752 1.0318 0.7672 27 8 4.3099 1.1239 1.0759 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 4.0357 1.1549 -2.1263 34 1 8.0750 0.8269 0.3558 35 1 9.3131 -0.1716 -1.9765 36 1 9.4566 1.6027 -1.9840 37 1 10.5130 1.5259 0.2585 38 1 10.3692 -0.2483 0.2653 39 1 11.7936 -0.3725 -1.7600 40 1 11.9380 1.4016 -1.7675 41 1 12.8033 -0.3356 0.4507 42 1 14.2122 -0.5670 -1.5165 43 1 14.3556 1.2071 -1.5239 44 1 16.8064 0.1172 -1.2626 45 1 20.1293 -0.1527 -1.4247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167763799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:25 Heat of formation + Delta-G solvation = -52.989012 kcal Electronic energy + Delta-G solvation = -26979.375811 eV Core-core repulsion = 22614.742338 eV Total energy + Delta-G solvation = -4364.633473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.62272 -39.99484 -38.64091 -38.32042 -36.64108 -35.00528 -34.56278 -33.85467 -33.27462 -31.48291 -31.09846 -28.43122 -27.44429 -26.28530 -25.61304 -24.33589 -23.33271 -22.78903 -21.77628 -20.44613 -19.22573 -18.48742 -18.42047 -17.87480 -17.26125 -16.94428 -16.61879 -16.47087 -16.23289 -15.86038 -15.65989 -15.41555 -14.64441 -14.60946 -14.35209 -14.30579 -14.09424 -13.58565 -13.50882 -13.42009 -12.96691 -12.90933 -12.22668 -12.14109 -12.09486 -11.87757 -11.83174 -11.48088 -11.44312 -11.11328 -10.99862 -10.94189 -10.69036 -10.49959 -10.33787 -10.21955 -10.21007 -9.51701 -9.51064 -8.47253 -8.07673 -7.95608 -6.41386 -3.82182 0.54165 1.04094 2.21889 2.49812 2.73015 3.16864 3.27404 3.27524 3.34826 3.44876 3.90932 3.92264 4.08275 4.27125 4.29016 4.40242 4.51268 4.68158 4.70094 4.73535 4.77633 4.89659 4.94142 5.01411 5.05718 5.16408 5.25953 5.29402 5.38585 5.44525 5.58570 5.78210 5.87703 5.97529 5.98596 6.06315 6.27035 6.28367 6.94538 7.18587 7.44349 7.55869 7.63827 7.66438 8.06935 8.61681 9.18397 9.54754 10.06138 10.76451 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.043105 B = 0.001194 C = 0.001171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.417821 B =23440.849762 C =23911.322421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.144 3.856 4 C -0.038 4.038 5 C -0.154 4.154 6 C -0.028 4.028 7 C 0.599 3.401 8 O -0.521 6.521 9 N -0.711 5.711 10 C 0.120 3.880 11 C -0.130 4.130 12 C 0.063 3.937 13 N -0.670 5.670 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 N -0.322 5.322 27 O 0.134 5.866 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.185 0.815 34 H 0.409 0.591 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.331 2.629 -2.387 37.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.067 3.933 4 C -0.101 4.101 5 C -0.176 4.176 6 C -0.187 4.187 7 C 0.382 3.618 8 O -0.395 6.395 9 N -0.363 5.363 10 C -0.003 4.003 11 C -0.169 4.169 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 N -0.020 5.020 27 O 0.055 5.945 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.202 0.798 34 H 0.244 0.756 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.169 0.831 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -36.186 3.069 -1.509 36.347 hybrid contribution 0.363 -0.761 -0.694 1.092 sum -35.823 2.308 -2.203 35.965 Atomic orbital electron populations 1.22843 0.79469 1.03647 1.00554 1.87981 1.20739 1.26136 1.95586 1.20671 0.82889 0.86353 1.03416 1.23947 0.95148 1.05372 0.85639 1.22501 0.89665 1.03820 1.01635 1.23517 0.96916 1.08104 0.90137 1.16814 0.81524 0.77134 0.86330 1.90823 1.86488 1.49772 1.12396 1.45873 1.05854 1.73462 1.11132 1.21456 0.81224 1.02920 0.94740 1.21758 0.92868 1.03936 0.98308 1.21817 0.89709 1.00875 0.94308 1.60043 1.00037 1.51745 1.18384 1.21673 0.89599 1.01097 0.95838 1.19811 0.83743 0.84429 0.89435 1.90520 1.83520 1.55560 1.17188 1.41868 1.04532 1.63945 1.09686 1.19761 0.84887 1.47059 0.91191 0.87863 1.25261 0.98620 0.97324 0.96717 1.69626 1.20921 1.50479 1.13294 0.85802 0.80365 0.77715 0.80477 1.19197 1.20771 1.20725 1.74208 0.97415 1.14834 1.15585 1.84796 1.11327 1.65070 1.33264 0.93423 0.88920 0.93378 0.90190 0.89142 0.79809 0.75587 0.90881 0.90609 0.89929 0.91075 0.95146 0.90684 0.83143 0.93789 0.89512 0.77444 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.07 11.01 101.05 1.11 1.18 16 2 O -0.39 -2.20 10.69 -35.23 -0.38 -2.57 16 3 C 0.14 0.52 6.50 36.01 0.23 0.76 16 4 C -0.04 -0.26 7.10 -35.35 -0.25 -0.51 16 5 C -0.15 -1.22 10.92 -39.08 -0.43 -1.64 16 6 C -0.03 -0.28 7.19 -82.53 -0.59 -0.87 16 7 C 0.60 6.83 7.85 -12.11 -0.10 6.73 16 8 O -0.52 -7.30 16.95 5.37 0.09 -7.21 16 9 N -0.71 -6.90 5.55 -61.09 -0.34 -7.24 16 10 C 0.12 1.13 5.67 -4.04 -0.02 1.11 16 11 C -0.13 -1.27 5.59 -26.73 -0.15 -1.42 16 12 C 0.06 0.74 5.69 -3.82 -0.02 0.72 16 13 N -0.67 -10.70 6.13 -115.05 -0.70 -11.40 16 14 C 0.05 0.90 6.17 -4.98 -0.03 0.86 16 15 C 0.44 10.50 7.82 -10.99 -0.09 10.42 16 16 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 17 N -0.56 -14.41 5.29 -10.97 -0.06 -14.47 16 18 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 19 H 0.10 3.05 7.16 -52.48 -0.38 2.68 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 22 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 N -0.32 -3.18 11.84 33.29 0.39 -2.78 16 27 O 0.13 1.14 11.18 17.24 0.19 1.33 16 28 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.05 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 33 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.41 3.46 8.23 -40.82 -0.34 3.12 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.35 5.73 8.43 -39.30 -0.33 5.39 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 397.94 15.07 6.00 6.00 Total: -1.00 -35.22 397.94 -6.01 -41.23 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -6.42 Total: 11.60 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.57 Total: 9.27 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.02 Total: -59.86 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.01 Total: -24.38 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.22 -6.01 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167763799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.761 kcal (2) G-P(sol) polarization free energy of solvation -35.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds