Wall clock time and date at job start Sat Apr 11 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99711 * 2 1 4 4 C 1.50703 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.30016 * 127.33332 * 270.00272 * 4 3 2 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 3 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.46983 * 179.97438 * 14 13 12 16 16 C 1.46903 * 111.00204 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46998 * 179.97438 * 16 15 14 18 18 O 1.21295 * 120.00000 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99798 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00027 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00216 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00110 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99736 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00089 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47206 * 89.99962 * 24 22 20 26 26 H 1.48498 * 109.46991 * 210.00427 * 24 22 20 27 27 H 1.48499 * 109.46978 * 330.00358 * 24 22 20 28 28 H 1.08993 * 109.47395 * 60.00101 * 1 2 3 29 29 H 1.08996 * 109.46537 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46719 * 299.99862 * 1 2 3 31 31 H 1.09001 * 109.47098 * 60.00302 * 3 2 1 32 32 H 1.09004 * 109.47229 * 300.00272 * 3 2 1 33 33 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 36 36 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 37 37 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 38 38 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 39 39 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 40 40 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 41 41 H 1.00901 * 110.99709 * 56.04986 * 15 14 13 42 42 H 1.08999 * 109.46830 * 300.00221 * 16 15 14 43 43 H 1.09000 * 109.46616 * 60.00377 * 16 15 14 44 44 H 0.97003 * 119.99741 * 0.02562 * 19 17 16 45 45 H 0.97007 * 120.00002 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2990 1.1242 1.0328 6 8 5.4605 1.0319 0.7194 7 6 5.6476 1.0117 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0427 1.1436 -2.6001 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0671 -3.5383 12 6 4.6503 1.0885 -4.9590 13 6 5.9204 0.9822 -5.8056 14 6 5.5475 1.0040 -7.2893 15 7 6.7670 0.9026 -8.1022 16 6 6.4471 0.9210 -9.5358 17 6 7.7199 0.8160 -10.3358 18 8 8.7883 0.7335 -9.7676 19 7 7.6709 0.8128 -11.6827 20 6 8.8288 0.7168 -12.4105 21 1 9.7801 0.6433 -11.9046 22 6 8.7783 0.7140 -13.7991 23 7 7.6208 0.8039 -14.4147 24 14 10.3560 0.5839 -14.7908 25 1 10.6633 -0.8462 -15.0468 26 1 10.1874 1.2933 -16.0845 27 1 11.4715 1.2012 -14.0294 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 6.5911 0.9310 -1.1214 34 1 5.9373 0.9934 -3.2730 35 1 3.9939 0.2471 -5.1816 36 1 4.1364 2.0214 -5.1906 37 1 6.5767 1.8235 -5.5831 38 1 6.4343 0.0492 -5.5742 39 1 4.8914 0.1625 -7.5115 40 1 5.0334 1.9368 -7.5212 41 1 7.2955 0.0779 -7.8598 42 1 5.7973 0.0788 -9.7739 43 1 5.9391 1.8532 -9.7827 44 1 6.8164 0.8784 -12.1371 45 1 7.5856 0.8024 -15.3841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170958615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:30 Heat of formation + Delta-G solvation = -54.957891 kcal Electronic energy + Delta-G solvation = -27492.933943 eV Core-core repulsion = 23128.215094 eV Total energy + Delta-G solvation = -4364.718850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.48472 -39.98287 -38.36535 -38.30461 -36.64067 -35.01703 -34.50229 -33.88172 -32.82482 -31.40422 -31.07250 -28.82270 -27.37755 -26.22379 -25.51497 -24.38479 -23.09081 -21.98747 -21.69526 -20.89934 -19.28600 -18.77771 -18.31465 -17.90112 -17.27422 -16.72372 -16.62667 -16.32370 -16.15802 -15.89675 -15.59471 -15.42407 -14.79304 -14.65801 -14.37528 -14.32411 -13.97348 -13.52846 -13.45559 -13.04602 -12.92990 -12.84657 -12.13674 -12.01076 -11.99640 -11.89378 -11.84566 -11.49878 -11.47667 -11.12685 -10.99475 -10.70329 -10.57410 -10.40820 -10.30951 -10.23585 -10.12344 -9.52906 -9.51199 -8.50413 -8.11325 -7.98190 -6.43557 -3.84516 0.52490 1.12616 2.32639 2.68709 2.75200 3.16516 3.21395 3.25401 3.31286 3.59653 3.88449 3.90952 4.04666 4.25957 4.27996 4.38830 4.69781 4.73182 4.75182 4.89679 4.93695 4.97088 4.98729 5.08673 5.13237 5.23635 5.27229 5.29016 5.35994 5.42381 5.55799 5.75205 5.85550 5.93705 5.95408 6.02242 6.24106 6.60121 6.97530 7.14589 7.53387 7.59890 7.61790 7.71493 8.04243 8.59101 9.15859 9.52209 10.03441 10.74106 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.001344 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.506528 B =20820.764900 C =21647.186176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.141 3.859 4 C 0.065 3.935 5 N -0.337 5.337 6 O 0.108 5.892 7 C -0.005 4.005 8 C -0.239 4.239 9 C 0.595 3.405 10 O -0.523 6.523 11 N -0.721 5.721 12 C 0.122 3.878 13 C -0.130 4.130 14 C 0.062 3.938 15 N -0.670 5.670 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.269 1.269 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.230 0.770 34 H 0.400 0.600 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 0.675 27.731 30.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.301 6.301 3 C 0.064 3.936 4 C -0.097 4.097 5 N -0.042 5.042 6 O 0.045 5.955 7 C -0.087 4.087 8 C -0.247 4.247 9 C 0.380 3.620 10 O -0.400 6.400 11 N -0.372 5.372 12 C -0.002 4.002 13 C -0.168 4.168 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.225 3.775 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.067 0.933 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.246 0.754 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.783 1.216 28.974 31.302 hybrid contribution 0.103 -0.749 -1.792 1.945 sum -11.680 0.467 27.182 29.589 Atomic orbital electron populations 1.22784 0.79858 1.03247 1.00376 1.87907 1.20482 1.26196 1.95545 1.20579 0.84077 0.86287 1.02675 1.24374 0.97502 1.01216 0.86654 1.73704 0.89480 1.17541 1.23478 1.84613 1.21643 1.66094 1.23181 1.26481 1.00310 0.97944 0.83965 1.22327 0.92852 1.13859 0.95627 1.16775 0.85490 0.76742 0.82975 1.90813 1.18324 1.49012 1.81838 1.45802 1.09620 1.75095 1.06730 1.21400 0.97679 1.02978 0.78110 1.21753 0.96743 1.03658 0.94638 1.21822 0.92139 1.01176 0.91664 1.60051 1.19496 1.47634 1.03016 1.21671 0.96756 1.01513 0.88265 1.19804 0.90048 0.84562 0.83048 1.90518 1.30738 1.55392 1.70231 1.41865 1.09922 1.63915 1.04258 1.19710 0.87681 1.47294 0.88345 0.87903 1.25267 0.98441 0.97272 0.96925 1.69613 1.24332 1.50332 1.09975 0.85850 0.81330 0.78347 0.78716 1.20422 1.20909 1.19392 0.93332 0.89196 0.93851 0.91267 0.89270 0.75363 0.76518 0.91026 0.90800 0.89987 0.91132 0.95167 0.90717 0.83176 0.93787 0.89534 0.77436 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.05 10.69 -35.23 -0.38 -4.43 16 3 C 0.14 1.31 6.20 36.01 0.22 1.53 16 4 C 0.07 0.65 7.21 -79.77 -0.58 0.07 16 5 N -0.34 -3.31 12.01 34.78 0.42 -2.89 16 6 O 0.11 0.80 11.06 18.64 0.21 1.00 16 7 C 0.00 -0.02 11.85 30.41 0.36 0.34 16 8 C -0.24 -1.99 6.47 -102.89 -0.67 -2.66 16 9 C 0.59 5.72 7.81 -12.53 -0.10 5.62 16 10 O -0.52 -6.87 15.70 5.27 0.08 -6.79 16 11 N -0.72 -4.98 5.55 -61.39 -0.34 -5.32 16 12 C 0.12 0.96 5.67 -4.04 -0.02 0.93 16 13 C -0.13 -1.04 5.59 -26.73 -0.15 -1.19 16 14 C 0.06 0.66 5.69 -3.82 -0.02 0.64 16 15 N -0.67 -10.05 6.12 -115.05 -0.70 -10.75 16 16 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 17 C 0.44 10.21 7.82 -10.99 -0.09 10.13 16 18 O -0.58 -15.61 15.78 5.54 0.09 -15.52 16 19 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.32 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.84 29.55 -169.99 -5.02 15.81 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.83 7.11 -51.93 -0.37 0.46 16 33 H 0.23 -0.06 7.68 -52.49 -0.40 -0.47 16 34 H 0.40 1.52 7.66 -40.82 -0.31 1.20 16 35 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.35 8.43 -39.29 -0.33 5.02 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -36.19 394.74 -5.55 -41.74 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.32 Total: 9.35 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: -0.19 Total: 9.62 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.04 Total: -56.73 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: 0.00 Total: -25.74 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.19 -5.55 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170958615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.214 kcal (2) G-P(sol) polarization free energy of solvation -36.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds