Wall clock time and date at job start Sat Apr 11 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99711 * 2 1 4 4 C 1.50703 * 109.47286 * 180.02562 * 3 2 1 5 5 N 1.30016 * 127.33332 * 270.00272 * 4 3 2 6 6 O 1.20656 * 112.30041 * 179.97438 * 5 4 3 7 7 C 1.33499 * 113.15795 * 359.75713 * 6 5 4 8 8 C 1.37362 * 106.33709 * 0.38708 * 7 6 5 9 9 C 1.47402 * 128.56305 * 179.91214 * 8 7 6 10 10 O 1.21603 * 120.00063 * 179.67612 * 9 8 7 11 11 N 1.34777 * 119.99679 * 359.67301 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72400 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 N 1.46904 * 109.46983 * 179.97438 * 14 13 12 16 16 C 1.46903 * 111.00204 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.46998 * 179.97438 * 16 15 14 18 18 O 1.21295 * 120.00000 * 0.02562 * 17 16 15 19 19 N 1.34775 * 119.99798 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00027 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00216 * 0.02562 * 20 19 17 22 22 C 1.38956 * 120.00110 * 180.02562 * 20 19 17 23 23 N 1.31408 * 119.99736 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00089 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47206 * 89.99962 * 24 22 20 26 26 H 1.48498 * 109.46991 * 210.00427 * 24 22 20 27 27 H 1.48499 * 109.46978 * 330.00358 * 24 22 20 28 28 H 1.08993 * 109.47395 * 60.00101 * 1 2 3 29 29 H 1.08996 * 109.46537 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46719 * 299.99862 * 1 2 3 31 31 H 1.09001 * 109.47098 * 60.00302 * 3 2 1 32 32 H 1.09004 * 109.47229 * 300.00272 * 3 2 1 33 33 H 1.07993 * 126.83299 * 180.30026 * 7 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 36 36 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 37 37 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 38 38 H 1.09006 * 109.47139 * 60.00254 * 13 12 11 39 39 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 40 40 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 41 41 H 1.00901 * 110.99709 * 56.04986 * 15 14 13 42 42 H 1.08999 * 109.46830 * 300.00221 * 16 15 14 43 43 H 1.09000 * 109.46616 * 60.00377 * 16 15 14 44 44 H 0.97003 * 119.99741 * 0.02562 * 19 17 16 45 45 H 0.97007 * 120.00002 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2990 1.1242 1.0328 6 8 5.4605 1.0319 0.7194 7 6 5.6476 1.0117 -0.6023 8 6 4.4014 1.1159 -1.1706 9 6 4.0427 1.1436 -2.6001 10 8 2.8767 1.2355 -2.9327 11 7 5.0072 1.0671 -3.5383 12 6 4.6503 1.0885 -4.9590 13 6 5.9204 0.9822 -5.8056 14 6 5.5475 1.0040 -7.2893 15 7 6.7670 0.9026 -8.1022 16 6 6.4471 0.9210 -9.5358 17 6 7.7199 0.8160 -10.3358 18 8 8.7883 0.7335 -9.7676 19 7 7.6709 0.8128 -11.6827 20 6 8.8288 0.7168 -12.4105 21 1 9.7801 0.6433 -11.9046 22 6 8.7783 0.7140 -13.7991 23 7 7.6208 0.8039 -14.4147 24 14 10.3560 0.5839 -14.7908 25 1 10.6633 -0.8462 -15.0468 26 1 10.1874 1.2933 -16.0845 27 1 11.4715 1.2012 -14.0294 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 6.5911 0.9310 -1.1214 34 1 5.9373 0.9934 -3.2730 35 1 3.9939 0.2471 -5.1816 36 1 4.1364 2.0214 -5.1906 37 1 6.5767 1.8235 -5.5831 38 1 6.4343 0.0492 -5.5742 39 1 4.8914 0.1625 -7.5115 40 1 5.0334 1.9368 -7.5212 41 1 7.2955 0.0779 -7.8598 42 1 5.7973 0.0788 -9.7739 43 1 5.9391 1.8532 -9.7827 44 1 6.8164 0.8784 -12.1371 45 1 7.5856 0.8024 -15.3841 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170958615.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:29 Heat of formation + Delta-G solvation = -85.711721 kcal Electronic energy + Delta-G solvation = -27494.267529 eV Core-core repulsion = 23128.215094 eV Total energy + Delta-G solvation = -4366.052436 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.10046 -40.70048 -40.13298 -38.99678 -37.62625 -36.13586 -35.66645 -35.12812 -33.52229 -33.24140 -32.07220 -29.46865 -28.62525 -26.98265 -26.61663 -25.61731 -24.12352 -22.67289 -22.36534 -21.58062 -21.04251 -19.90161 -19.38204 -18.93957 -17.94676 -17.80742 -17.37733 -17.24208 -17.09098 -16.75960 -16.60272 -16.34681 -16.28332 -15.92395 -15.47211 -15.42536 -15.05422 -14.84928 -14.47936 -14.28099 -13.63418 -13.53958 -13.40623 -13.35081 -13.17734 -12.85082 -12.71579 -12.58747 -12.52411 -12.40079 -12.39913 -12.10865 -11.81778 -11.49247 -11.36872 -11.30780 -10.88678 -10.79319 -10.33712 -10.15911 -10.00567 -9.30880 -8.45725 -5.94553 0.02275 0.47941 1.39330 1.43340 1.56035 1.78788 2.04885 2.06551 2.18939 2.30745 2.63384 2.96803 3.01277 3.21849 3.34149 3.54865 3.70185 3.86819 4.04238 4.08912 4.18220 4.21852 4.24920 4.35836 4.44226 4.48622 4.50748 4.59449 4.60035 4.61377 4.63954 4.74199 4.78102 4.82777 5.16646 5.22974 5.37094 5.42042 5.90119 5.98621 6.11468 6.41262 6.45824 6.61034 7.06381 7.10103 7.13556 7.57509 8.12447 8.71589 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.001344 C = 0.001293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.506528 B =20820.764900 C =21647.186176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.140 3.860 4 C 0.042 3.958 5 N -0.360 5.360 6 O 0.110 5.890 7 C 0.036 3.964 8 C -0.269 4.269 9 C 0.595 3.405 10 O -0.568 6.568 11 N -0.705 5.705 12 C 0.128 3.872 13 C -0.115 4.115 14 C 0.061 3.939 15 N -0.683 5.683 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.993 3.007 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.272 1.272 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.284 0.716 34 H 0.418 0.582 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.078 0.922 41 H 0.346 0.654 42 H 0.066 0.934 43 H 0.103 0.897 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 0.547 28.053 30.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.063 3.937 4 C -0.121 4.121 5 N -0.065 5.065 6 O 0.047 5.953 7 C -0.046 4.046 8 C -0.277 4.277 9 C 0.381 3.619 10 O -0.448 6.448 11 N -0.357 5.357 12 C 0.004 3.996 13 C -0.153 4.153 14 C -0.068 4.068 15 N -0.315 5.315 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.465 4.465 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.300 0.700 34 H 0.256 0.744 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.165 0.835 42 H 0.084 0.916 43 H 0.121 0.879 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.031 1.089 29.311 31.337 hybrid contribution -0.118 -0.712 -1.840 1.977 sum -11.148 0.377 27.471 29.650 Atomic orbital electron populations 1.22966 0.78339 1.04231 1.01235 1.87856 1.22334 1.27090 1.95702 1.20599 0.84318 0.85928 1.02821 1.24642 0.98014 1.01836 0.87560 1.73699 0.90237 1.18564 1.23975 1.84581 1.20700 1.65589 1.24423 1.27393 1.00940 0.93615 0.82629 1.22257 0.94048 1.16642 0.94738 1.16955 0.85163 0.76035 0.83710 1.90789 1.20177 1.51312 1.82535 1.45623 1.10195 1.73919 1.05976 1.21253 0.97395 1.02397 0.78512 1.21592 0.96644 1.04315 0.92789 1.21918 0.90610 1.01803 0.92485 1.60053 1.21657 1.47674 1.02124 1.21532 0.93348 1.03240 0.88713 1.20908 0.91754 0.82202 0.82682 1.90484 1.33029 1.56553 1.70875 1.41946 1.09384 1.64683 1.05088 1.19687 0.87901 1.49572 0.89333 0.90218 1.26040 1.01623 0.96279 0.97292 1.69674 1.25791 1.50163 1.10512 0.84922 0.77423 0.78621 0.77345 1.19617 1.19648 1.19722 0.93263 0.88197 0.92184 0.90050 0.90076 0.70035 0.74440 0.91739 0.91457 0.89789 0.90081 0.94143 0.90321 0.83547 0.91586 0.87874 0.76984 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.98 10.69 -148.98 -1.59 -10.57 16 3 C 0.14 2.71 6.20 71.24 0.44 3.15 16 4 C 0.04 0.83 7.21 45.16 0.33 1.15 16 5 N -0.36 -6.85 12.01 -44.78 -0.54 -7.38 16 6 O 0.11 1.41 11.06 76.93 0.85 2.27 16 7 C 0.04 0.24 11.85 67.61 0.80 1.04 16 8 C -0.27 -4.16 6.47 -18.74 -0.12 -4.28 16 9 C 0.59 10.93 7.81 86.66 0.68 11.60 16 10 O -0.57 -15.20 15.70 -4.04 -0.06 -15.26 16 11 N -0.70 -8.23 5.55 -466.39 -2.59 -10.82 16 12 C 0.13 1.78 5.67 86.38 0.49 2.27 16 13 C -0.12 -1.55 5.59 30.59 0.17 -1.38 16 14 C 0.06 1.16 5.69 86.30 0.49 1.65 16 15 N -0.68 -19.24 6.12 -517.92 -3.17 -22.41 16 16 C 0.06 2.08 6.17 85.56 0.53 2.61 16 17 C 0.44 20.25 7.82 87.66 0.69 20.93 16 18 O -0.62 -33.62 15.78 -3.07 -0.05 -33.66 16 19 N -0.57 -29.00 5.29 -306.99 -1.62 -30.62 16 20 C -0.34 -18.85 9.68 84.04 0.81 -18.03 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 24 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.63 7.11 -2.39 -0.02 1.62 16 33 H 0.28 -1.66 7.68 -2.91 -0.02 -1.68 16 34 H 0.42 1.72 7.66 -92.71 -0.71 1.01 16 35 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.35 10.09 8.43 -89.69 -0.76 9.33 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 45 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 Total: -1.00 -80.90 394.74 -0.59 -81.49 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -1.14 Total: 29.35 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: 7.02 Total: 22.16 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -7.64 Total: -120.17 kcal Atomic # 8 Polarization: -56.38 SS G_CDS: -0.85 Total: -57.23 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -80.90 -0.59 -81.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170958615.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.218 kcal (2) G-P(sol) polarization free energy of solvation -80.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds