Wall clock time and date at job start Sat Apr 11 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48504 * 109.47073 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46944 * 119.99907 * 3 2 1 6 6 H 1.48495 * 109.47323 * 240.00022 * 3 2 1 7 7 C 1.37876 * 119.99755 * 180.28113 * 2 1 3 8 8 C 1.51267 * 120.84977 * 190.04267 * 7 2 1 9 9 C 1.53666 * 108.30720 * 231.38195 * 8 7 2 10 10 C 1.52963 * 109.32157 * 305.12969 * 9 8 7 11 11 H 1.08992 * 109.41525 * 303.62859 * 10 9 8 12 12 N 1.46502 * 109.35663 * 183.80140 * 10 9 8 13 13 C 1.34768 * 119.99703 * 84.68216 * 12 10 9 14 14 O 1.21277 * 120.00467 * 0.02562 * 13 12 10 15 15 C 1.50708 * 119.99807 * 180.02562 * 13 12 10 16 16 H 1.09001 * 115.55964 * 325.64279 * 15 13 12 17 17 C 1.53133 * 117.51602 * 111.39272 * 15 13 12 18 18 C 1.52334 * 59.82728 * 107.44097 * 17 15 13 19 19 C 1.50790 * 121.76485 * 248.91672 * 18 17 15 20 20 O 1.21279 * 126.61315 * 36.17124 * 19 18 17 21 21 N 1.34600 * 106.76535 * 216.20756 * 19 18 17 22 22 C 1.39620 * 112.21692 * 0.02562 * 21 19 18 23 23 C 1.39322 * 130.80421 * 179.97438 * 22 21 19 24 24 C 1.37933 * 120.18585 * 179.97438 * 23 22 21 25 25 C 1.38305 * 120.34223 * 0.02562 * 24 23 22 26 26 C 1.38364 * 119.83889 * 0.02562 * 25 24 23 27 27 C 1.37681 * 119.98745 * 359.97438 * 26 25 24 28 28 C 1.52957 * 109.81267 * 63.73563 * 10 9 8 29 29 C 1.51271 * 120.85017 * 9.75282 * 7 2 1 30 30 H 0.97001 * 120.00263 * 185.67930 * 1 2 3 31 31 H 1.09003 * 109.62110 * 351.03253 * 8 7 2 32 32 H 1.08996 * 109.63252 * 111.60725 * 8 7 2 33 33 H 1.09002 * 109.41008 * 185.24584 * 9 8 7 34 34 H 1.08996 * 109.63048 * 65.15355 * 9 8 7 35 35 H 0.96994 * 119.99874 * 264.68974 * 12 10 9 36 36 H 1.08997 * 117.51542 * 214.88052 * 17 15 13 37 37 H 1.09002 * 117.51655 * 0.02562 * 17 15 13 38 38 H 0.96998 * 123.88955 * 180.02562 * 21 19 18 39 39 H 1.08000 * 119.90781 * 0.02562 * 23 22 21 40 40 H 1.07991 * 119.82579 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.07615 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.00660 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.48271 * 176.42393 * 28 10 9 44 44 H 1.08997 * 109.50222 * 56.38547 * 28 10 9 45 45 H 1.08997 * 109.62541 * 248.39215 * 29 7 2 46 46 H 1.09001 * 109.62553 * 8.77533 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 -0.0059 8 6 3.4997 -1.2276 0.2204 9 6 4.1417 -2.0399 -0.9151 10 6 3.4843 -3.4193 -0.9849 11 1 3.5734 -3.9125 -0.0170 12 7 4.1564 -4.2263 -2.0063 13 6 5.2757 -4.9099 -1.6962 14 8 5.7264 -4.8573 -0.5715 15 6 5.9674 -5.7396 -2.7471 16 1 5.3120 -6.2199 -3.4737 17 6 7.3373 -5.2619 -3.2372 18 6 7.2304 -6.4856 -2.3362 19 6 7.7336 -6.4711 -0.9148 20 8 7.6866 -5.5390 -0.1403 21 7 8.2456 -7.6919 -0.6717 22 6 8.1446 -8.5368 -1.7787 23 6 8.5436 -9.8601 -1.9535 24 6 8.3330 -10.4944 -3.1600 25 6 7.7253 -9.8232 -4.2055 26 6 7.3270 -8.5085 -4.0407 27 6 7.5355 -7.8720 -2.8377 28 6 2.0054 -3.2712 -1.3458 29 6 1.2838 -2.5047 -0.2323 30 1 -0.4850 -0.8359 0.0831 31 1 3.8939 -0.2114 0.2133 32 1 3.7146 -1.6999 1.1790 33 1 5.2080 -2.1547 -0.7204 34 1 3.9988 -1.5207 -1.8628 35 1 3.7958 -4.2686 -2.9057 36 1 7.5831 -5.4287 -4.2859 37 1 7.7382 -4.3479 -2.7992 38 1 8.6393 -7.9545 0.1750 39 1 9.0184 -10.3911 -1.1416 40 1 8.6443 -11.5204 -3.2890 41 1 7.5622 -10.3242 -5.1483 42 1 6.8518 -7.9819 -4.8551 43 1 1.5575 -4.2587 -1.4564 44 1 1.9128 -2.7230 -2.2834 45 1 1.2972 -3.0930 0.6852 46 1 0.2528 -2.3094 -0.5271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179432342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:32 Heat of formation + Delta-G solvation = -12.400670 kcal Electronic energy + Delta-G solvation = -29222.533440 eV Core-core repulsion = 25270.509273 eV Total energy + Delta-G solvation = -3952.024167 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.94584 -39.56960 -38.43471 -37.12086 -36.03758 -35.57783 -33.76686 -31.57864 -31.12197 -29.71943 -29.49305 -27.25226 -26.04640 -24.17592 -22.86696 -22.21701 -21.77167 -21.23899 -20.53749 -19.63627 -19.28340 -18.00594 -17.69927 -16.58302 -16.27499 -16.05427 -15.74385 -15.41082 -14.91257 -14.74440 -14.47805 -14.24770 -14.09405 -13.78268 -13.63701 -13.31076 -12.96252 -12.88893 -12.47921 -12.38027 -12.24748 -11.89476 -11.57813 -11.55744 -11.29537 -11.02316 -10.99097 -10.81355 -10.64326 -10.39359 -10.27791 -10.16773 -10.06678 -9.66693 -9.38155 -9.21608 -9.02181 -8.66012 -8.38029 -8.23165 -8.18955 -6.42221 -4.00254 0.79231 0.95472 2.21181 2.75432 2.86194 3.32915 3.44186 3.45103 3.46533 3.64888 3.81157 3.98009 4.02625 4.19478 4.50459 4.55606 4.60080 4.66201 4.94958 4.98791 5.09064 5.13442 5.23761 5.25682 5.33478 5.53837 5.61678 5.71369 5.80357 5.86242 6.02237 6.12050 6.16653 6.33260 6.43482 6.48565 6.64889 6.68559 6.75861 6.77868 6.80364 6.94849 7.09235 7.20088 7.28327 7.40484 7.60233 7.91739 8.01593 8.08976 8.34748 8.64620 8.87494 9.60788 10.94661 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.002425 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.934547 B =11541.252718 C =11877.273696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.037 3.963 3 Si 1.058 2.942 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.568 4.568 8 C -0.003 4.003 9 C -0.114 4.114 10 C 0.159 3.841 11 H 0.076 0.924 12 N -0.721 5.721 13 C 0.519 3.481 14 O -0.501 6.501 15 C -0.135 4.135 16 H 0.134 0.866 17 C -0.099 4.099 18 C -0.118 4.118 19 C 0.551 3.449 20 O -0.431 6.431 21 N -0.669 5.669 22 C 0.159 3.841 23 C -0.147 4.147 24 C -0.083 4.083 25 C -0.146 4.146 26 C -0.064 4.064 27 C -0.109 4.109 28 C -0.111 4.111 29 C 0.006 3.994 30 H 0.271 0.729 31 H 0.026 0.974 32 H 0.016 0.984 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.392 0.608 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.413 0.587 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.034 0.966 44 H 0.054 0.946 45 H 0.007 0.993 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.751 -20.705 -11.936 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.169 4.169 3 Si 0.887 3.113 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.587 4.587 8 C -0.041 4.041 9 C -0.153 4.153 10 C 0.057 3.943 11 H 0.094 0.906 12 N -0.372 5.372 13 C 0.303 3.697 14 O -0.376 6.376 15 C -0.156 4.156 16 H 0.152 0.848 17 C -0.137 4.137 18 C -0.122 4.122 19 C 0.336 3.664 20 O -0.298 6.298 21 N -0.313 5.313 22 C 0.061 3.939 23 C -0.168 4.168 24 C -0.102 4.102 25 C -0.165 4.165 26 C -0.082 4.082 27 C -0.112 4.112 28 C -0.149 4.149 29 C -0.032 4.032 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.225 0.775 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.251 0.749 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.145 0.855 43 H 0.053 0.947 44 H 0.073 0.927 45 H 0.025 0.975 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.766 -18.326 -10.718 27.052 hybrid contribution 0.191 -2.090 -0.040 2.099 sum 16.956 -20.416 -10.758 28.637 Atomic orbital electron populations 1.70809 1.06952 1.30873 1.45448 1.25729 0.96130 1.01809 0.93193 0.83675 0.74869 0.75739 0.77011 1.21383 1.21255 1.21132 1.21034 0.92006 0.92971 1.52715 1.19606 0.96080 0.94788 0.93650 1.22000 0.97369 0.95115 1.00855 1.20960 0.91933 0.90944 0.90505 0.90597 1.46303 1.26836 1.49087 1.14928 1.19532 0.81344 0.80299 0.88517 1.90941 1.62914 1.62684 1.21014 1.22257 0.90709 1.01407 1.01266 0.84827 1.22971 0.95939 0.95610 0.99151 1.20045 1.04060 0.92385 0.95699 1.19188 0.77652 0.81700 0.87890 1.90953 1.50804 1.35958 1.52097 1.43716 1.60109 1.12951 1.14550 1.18220 0.96959 0.91679 0.87024 1.20359 1.05301 0.91901 0.99233 1.20874 0.97476 0.99707 0.92134 1.21010 1.01568 0.94394 0.99573 1.20253 0.98211 0.94482 0.95267 1.18995 1.04205 0.93341 0.94673 1.21860 0.93373 0.98272 1.01416 1.19369 0.96267 0.94850 0.92711 0.91694 0.95581 0.96582 0.94445 0.93102 0.77471 0.86288 0.86648 0.74879 0.85631 0.85271 0.85333 0.85497 0.94686 0.92693 0.97514 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.78 13.57 55.43 0.75 -26.03 16 2 C 0.04 1.02 5.45 -17.82 -0.10 0.93 16 3 Si 1.06 25.38 27.21 -169.99 -4.62 20.76 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.57 -15.23 5.47 -98.92 -0.54 -15.77 16 8 C 0.00 -0.07 5.68 -27.26 -0.15 -0.23 16 9 C -0.11 -2.51 5.51 -26.40 -0.15 -2.65 16 10 C 0.16 3.23 2.35 -67.97 -0.16 3.07 16 11 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 12 N -0.72 -11.62 5.07 -53.85 -0.27 -11.89 16 13 C 0.52 8.63 7.57 -10.99 -0.08 8.55 16 14 O -0.50 -10.67 12.03 -19.62 -0.24 -10.90 16 15 C -0.13 -1.57 6.07 -92.04 -0.56 -2.13 16 16 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.10 -0.99 9.99 -27.00 -0.27 -1.26 16 18 C -0.12 -1.42 2.42 -157.52 -0.38 -1.80 16 19 C 0.55 8.24 7.76 -11.02 -0.09 8.16 16 20 O -0.43 -8.38 14.48 -19.62 -0.28 -8.66 16 21 N -0.67 -7.62 5.90 -9.79 -0.06 -7.67 16 22 C 0.16 1.59 7.12 -83.59 -0.59 1.00 16 23 C -0.15 -1.10 10.07 -39.29 -0.40 -1.50 16 24 C -0.08 -0.52 10.02 -39.67 -0.40 -0.92 16 25 C -0.15 -0.92 10.06 -39.51 -0.40 -1.31 16 26 C -0.06 -0.48 10.03 -39.74 -0.40 -0.87 16 27 C -0.11 -1.09 6.12 -104.58 -0.64 -1.73 16 28 C -0.11 -2.28 5.40 -26.63 -0.14 -2.42 16 29 C 0.01 0.15 5.78 -27.48 -0.16 -0.01 16 30 H 0.27 7.93 6.65 -40.82 -0.27 7.66 16 31 H 0.03 0.63 5.16 -51.93 -0.27 0.36 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.39 5.01 8.60 -40.82 -0.35 4.66 16 36 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 1.33 8.14 -51.93 -0.42 0.90 16 38 H 0.41 3.77 8.96 -40.82 -0.37 3.41 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 46 H 0.04 1.00 6.18 -51.93 -0.32 0.68 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -35.14 371.09 -11.00 -46.13 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.26 Total: 3.58 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -5.60 Total: -10.90 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.42 Total: -45.60 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.52 Total: -19.56 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.62 Total: 20.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.14 -11.00 -46.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179432342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.732 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds