Wall clock time and date at job start Sat Apr 11 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00020 * 2 1 4 4 H 1.48504 * 109.47073 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46944 * 119.99907 * 3 2 1 6 6 H 1.48495 * 109.47323 * 240.00022 * 3 2 1 7 7 C 1.37876 * 119.99755 * 180.28113 * 2 1 3 8 8 C 1.51267 * 120.84977 * 190.04267 * 7 2 1 9 9 C 1.53666 * 108.30720 * 231.38195 * 8 7 2 10 10 C 1.52963 * 109.32157 * 305.12969 * 9 8 7 11 11 H 1.08992 * 109.41525 * 303.62859 * 10 9 8 12 12 N 1.46502 * 109.35663 * 183.80140 * 10 9 8 13 13 C 1.34768 * 119.99703 * 84.68216 * 12 10 9 14 14 O 1.21277 * 120.00467 * 0.02562 * 13 12 10 15 15 C 1.50708 * 119.99807 * 180.02562 * 13 12 10 16 16 H 1.09001 * 115.55964 * 325.64279 * 15 13 12 17 17 C 1.53133 * 117.51602 * 111.39272 * 15 13 12 18 18 C 1.52334 * 59.82728 * 107.44097 * 17 15 13 19 19 C 1.50790 * 121.76485 * 248.91672 * 18 17 15 20 20 O 1.21279 * 126.61315 * 36.17124 * 19 18 17 21 21 N 1.34600 * 106.76535 * 216.20756 * 19 18 17 22 22 C 1.39620 * 112.21692 * 0.02562 * 21 19 18 23 23 C 1.39322 * 130.80421 * 179.97438 * 22 21 19 24 24 C 1.37933 * 120.18585 * 179.97438 * 23 22 21 25 25 C 1.38305 * 120.34223 * 0.02562 * 24 23 22 26 26 C 1.38364 * 119.83889 * 0.02562 * 25 24 23 27 27 C 1.37681 * 119.98745 * 359.97438 * 26 25 24 28 28 C 1.52957 * 109.81267 * 63.73563 * 10 9 8 29 29 C 1.51271 * 120.85017 * 9.75282 * 7 2 1 30 30 H 0.97001 * 120.00263 * 185.67930 * 1 2 3 31 31 H 1.09003 * 109.62110 * 351.03253 * 8 7 2 32 32 H 1.08996 * 109.63252 * 111.60725 * 8 7 2 33 33 H 1.09002 * 109.41008 * 185.24584 * 9 8 7 34 34 H 1.08996 * 109.63048 * 65.15355 * 9 8 7 35 35 H 0.96994 * 119.99874 * 264.68974 * 12 10 9 36 36 H 1.08997 * 117.51542 * 214.88052 * 17 15 13 37 37 H 1.09002 * 117.51655 * 0.02562 * 17 15 13 38 38 H 0.96998 * 123.88955 * 180.02562 * 21 19 18 39 39 H 1.08000 * 119.90781 * 0.02562 * 23 22 21 40 40 H 1.07991 * 119.82579 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.07615 * 180.02562 * 25 24 23 42 42 H 1.08000 * 120.00660 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.48271 * 176.42393 * 28 10 9 44 44 H 1.08997 * 109.50222 * 56.38547 * 28 10 9 45 45 H 1.08997 * 109.62541 * 248.39215 * 29 7 2 46 46 H 1.09001 * 109.62553 * 8.77533 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 -0.0059 8 6 3.4997 -1.2276 0.2204 9 6 4.1417 -2.0399 -0.9151 10 6 3.4843 -3.4193 -0.9849 11 1 3.5734 -3.9125 -0.0170 12 7 4.1564 -4.2263 -2.0063 13 6 5.2757 -4.9099 -1.6962 14 8 5.7264 -4.8573 -0.5715 15 6 5.9674 -5.7396 -2.7471 16 1 5.3120 -6.2199 -3.4737 17 6 7.3373 -5.2619 -3.2372 18 6 7.2304 -6.4856 -2.3362 19 6 7.7336 -6.4711 -0.9148 20 8 7.6866 -5.5390 -0.1403 21 7 8.2456 -7.6919 -0.6717 22 6 8.1446 -8.5368 -1.7787 23 6 8.5436 -9.8601 -1.9535 24 6 8.3330 -10.4944 -3.1600 25 6 7.7253 -9.8232 -4.2055 26 6 7.3270 -8.5085 -4.0407 27 6 7.5355 -7.8720 -2.8377 28 6 2.0054 -3.2712 -1.3458 29 6 1.2838 -2.5047 -0.2323 30 1 -0.4850 -0.8359 0.0831 31 1 3.8939 -0.2114 0.2133 32 1 3.7146 -1.6999 1.1790 33 1 5.2080 -2.1547 -0.7204 34 1 3.9988 -1.5207 -1.8628 35 1 3.7958 -4.2686 -2.9057 36 1 7.5831 -5.4287 -4.2859 37 1 7.7382 -4.3479 -2.7992 38 1 8.6393 -7.9545 0.1750 39 1 9.0184 -10.3911 -1.1416 40 1 8.6443 -11.5204 -3.2890 41 1 7.5622 -10.3242 -5.1483 42 1 6.8518 -7.9819 -4.8551 43 1 1.5575 -4.2587 -1.4564 44 1 1.9128 -2.7230 -2.2834 45 1 1.2972 -3.0930 0.6852 46 1 0.2528 -2.3094 -0.5271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179432342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:32 Heat of formation + Delta-G solvation = -34.988908 kcal Electronic energy + Delta-G solvation = -29223.512939 eV Core-core repulsion = 25270.509273 eV Total energy + Delta-G solvation = -3953.003666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.78708 -40.83360 -39.35974 -38.67040 -37.14247 -36.47003 -35.50780 -33.38019 -31.76103 -31.58587 -30.15670 -28.99394 -26.95094 -25.40867 -23.97562 -23.48449 -23.05465 -22.48026 -21.64107 -21.35103 -20.46413 -18.84912 -18.75442 -18.29083 -17.36020 -17.25432 -16.81247 -16.39655 -16.17763 -15.88381 -15.71228 -15.47205 -15.13883 -14.96407 -14.77499 -14.70390 -14.33114 -14.16796 -13.87243 -13.71906 -13.41180 -13.27831 -12.93990 -12.90348 -12.51847 -12.22958 -12.18694 -12.15191 -12.04296 -11.97591 -11.78007 -11.59215 -11.56213 -11.37171 -11.16816 -10.60038 -10.48860 -10.37526 -9.89261 -9.70884 -8.94838 -8.62064 -6.19221 0.13461 0.41690 1.29443 1.50086 1.54470 1.65853 1.75359 1.98146 2.12926 2.52783 2.75932 2.99456 3.08521 3.14190 3.27628 3.33691 3.72567 3.85109 3.98910 4.05581 4.11335 4.23232 4.37337 4.39092 4.46738 4.58277 4.59455 4.61865 4.73549 4.79471 4.83907 4.86580 4.91239 5.08286 5.08701 5.13097 5.13921 5.21149 5.23025 5.43989 5.50673 5.61182 5.61881 5.66097 5.69682 5.87132 6.00465 6.12224 6.21357 6.66526 6.71574 7.03667 7.41101 7.48209 8.74916 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025969 B = 0.002425 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.934547 B =11541.252718 C =11877.273696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.011 4.011 3 Si 1.091 2.909 4 H -0.290 1.290 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.576 4.576 8 C -0.008 4.008 9 C -0.105 4.105 10 C 0.171 3.829 11 H 0.042 0.958 12 N -0.708 5.708 13 C 0.511 3.489 14 O -0.552 6.552 15 C -0.131 4.131 16 H 0.177 0.823 17 C -0.079 4.079 18 C -0.129 4.129 19 C 0.534 3.466 20 O -0.497 6.497 21 N -0.665 5.665 22 C 0.124 3.876 23 C -0.147 4.147 24 C -0.083 4.083 25 C -0.138 4.138 26 C -0.064 4.064 27 C -0.118 4.118 28 C -0.096 4.096 29 C -0.001 4.001 30 H 0.261 0.739 31 H 0.032 0.968 32 H -0.001 1.001 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.413 0.587 36 H 0.166 0.834 37 H 0.093 0.907 38 H 0.417 0.583 39 H 0.140 0.860 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.060 0.940 44 H 0.064 0.936 45 H -0.009 1.009 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.141 -23.096 -16.060 33.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.210 4.210 3 Si 0.915 3.085 4 H -0.216 1.216 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.595 4.595 8 C -0.046 4.046 9 C -0.144 4.144 10 C 0.067 3.933 11 H 0.060 0.940 12 N -0.360 5.360 13 C 0.297 3.703 14 O -0.429 6.429 15 C -0.152 4.152 16 H 0.194 0.806 17 C -0.116 4.116 18 C -0.133 4.133 19 C 0.321 3.679 20 O -0.369 6.369 21 N -0.310 5.310 22 C 0.027 3.973 23 C -0.168 4.168 24 C -0.102 4.102 25 C -0.157 4.157 26 C -0.082 4.082 27 C -0.121 4.121 28 C -0.134 4.134 29 C -0.039 4.039 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.017 0.983 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.250 0.750 36 H 0.184 0.816 37 H 0.111 0.889 38 H 0.255 0.745 39 H 0.158 0.842 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.173 0.827 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.009 0.991 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 18.173 -20.798 -14.913 31.389 hybrid contribution -0.191 -1.538 1.284 2.013 sum 17.982 -22.337 -13.630 31.750 Atomic orbital electron populations 1.70910 1.07899 1.30292 1.48225 1.26882 0.96203 1.04968 0.92940 0.83249 0.74350 0.72641 0.78280 1.21644 1.20290 1.18763 1.21510 0.93106 0.93651 1.51235 1.19625 0.95302 0.95624 0.94063 1.21852 0.96813 0.95769 0.99945 1.20487 0.92061 0.90326 0.90457 0.93961 1.45985 1.26726 1.48355 1.14981 1.20431 0.80855 0.80005 0.89014 1.90956 1.64059 1.64216 1.23658 1.22259 0.91330 1.01176 1.00423 0.80554 1.23161 0.93717 0.93844 1.00923 1.20070 1.04281 0.94517 0.94397 1.19835 0.77239 0.81794 0.89043 1.90905 1.53781 1.38163 1.54076 1.43656 1.59336 1.12494 1.15468 1.18561 0.99278 0.92763 0.86650 1.20668 1.04702 0.90927 1.00495 1.21302 0.96541 1.00971 0.91360 1.21460 0.99734 0.93907 1.00601 1.20606 0.97809 0.95027 0.94780 1.19039 1.05226 0.92082 0.95791 1.21631 0.92980 0.99051 0.99759 1.19393 0.96029 0.94764 0.93728 0.92845 0.94984 0.98295 0.94978 0.91985 0.74980 0.81643 0.88851 0.74472 0.84238 0.82433 0.82319 0.82722 0.92129 0.91713 0.99057 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.59 13.57 21.45 0.29 -56.30 16 2 C -0.01 -0.61 5.45 84.65 0.46 -0.15 16 3 Si 1.09 51.02 27.21 68.60 1.87 52.89 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.58 -31.34 5.47 -16.17 -0.09 -31.43 16 8 C -0.01 -0.39 5.68 30.25 0.17 -0.22 16 9 C -0.10 -4.59 5.51 30.81 0.17 -4.42 16 10 C 0.17 6.92 2.35 44.96 0.11 7.03 16 11 H 0.04 2.01 7.58 -2.39 -0.02 1.99 16 12 N -0.71 -21.78 5.07 -442.67 -2.24 -24.03 16 13 C 0.51 16.73 7.57 87.66 0.66 17.40 16 14 O -0.55 -24.51 12.03 21.05 0.25 -24.26 16 15 C -0.13 -2.73 6.07 -11.71 -0.07 -2.80 16 16 H 0.18 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.08 -1.39 9.99 30.42 0.30 -1.08 16 18 C -0.13 -2.92 2.42 -54.13 -0.13 -3.05 16 19 C 0.53 16.74 7.76 87.71 0.68 17.42 16 20 O -0.50 -20.90 14.48 21.05 0.30 -20.59 16 21 N -0.67 -15.75 5.90 -303.37 -1.79 -17.53 16 22 C 0.12 2.33 7.12 38.37 0.27 2.60 16 23 C -0.15 -1.86 10.07 22.46 0.23 -1.63 16 24 C -0.08 -0.69 10.02 22.21 0.22 -0.47 16 25 C -0.14 -1.03 10.06 22.32 0.22 -0.80 16 26 C -0.06 -0.65 10.03 22.17 0.22 -0.43 16 27 C -0.12 -2.05 6.12 -19.84 -0.12 -2.18 16 28 C -0.10 -3.86 5.40 30.66 0.17 -3.69 16 29 C 0.00 -0.05 5.78 30.11 0.17 0.12 16 30 H 0.26 15.79 6.65 -92.71 -0.62 15.18 16 31 H 0.03 1.54 5.16 -2.39 -0.01 1.52 16 32 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.41 9.24 8.60 -92.71 -0.80 8.44 16 36 H 0.17 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.42 8.31 8.96 -92.71 -0.83 7.48 16 39 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.16 0.39 8.06 -2.92 -0.02 0.37 16 41 H 0.16 0.26 8.06 -2.91 -0.02 0.23 16 42 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 45 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 46 H 0.02 1.29 6.18 -2.39 -0.01 1.27 16 Total: -1.00 -82.94 371.09 1.90 -81.05 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -0.44 Total: 16.56 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 3.65 Total: -7.78 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -3.74 Total: -97.86 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: 0.56 Total: -44.85 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 1.87 Total: 52.89 kcal Total: -82.94 1.90 -81.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179432342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.058 kcal (2) G-P(sol) polarization free energy of solvation -82.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds