Wall clock time and date at job start Sat Apr 11 2020 06:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99845 * 2 1 4 4 H 1.48493 * 109.47147 * 270.00240 * 3 2 1 5 5 H 1.48501 * 109.46894 * 30.00151 * 3 2 1 6 6 H 1.48502 * 109.47028 * 150.00046 * 3 2 1 7 7 C 1.37875 * 120.00331 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.85223 * 180.02562 * 7 2 1 9 9 C 1.53225 * 108.54171 * 231.32611 * 8 7 2 10 10 C 1.52959 * 109.40286 * 305.37610 * 9 8 7 11 11 H 1.09002 * 109.41303 * 303.48989 * 10 9 8 12 12 N 1.46500 * 109.35396 * 183.66617 * 10 9 8 13 13 C 1.34778 * 120.00249 * 84.82480 * 12 10 9 14 14 O 1.21286 * 119.99559 * 359.97438 * 13 12 10 15 15 C 1.50695 * 120.00078 * 179.97438 * 13 12 10 16 16 N 1.46499 * 109.46919 * 179.97438 * 15 13 12 17 17 C 1.36538 * 118.86448 * 269.73193 * 16 15 13 18 18 C 1.34295 * 122.41394 * 179.69824 * 17 16 15 19 19 C 1.46367 * 119.41759 * 0.56513 * 18 17 16 20 20 C 1.39574 * 122.04860 * 179.75091 * 19 18 17 21 21 C 1.36729 * 119.49413 * 179.97438 * 20 19 18 22 22 C 1.38902 * 120.88611 * 359.97438 * 21 20 19 23 23 C 1.36743 * 120.88839 * 0.02562 * 22 21 20 24 24 C 1.39465 * 119.50569 * 359.97438 * 23 22 21 25 25 C 1.34783 * 118.86593 * 89.99976 * 16 15 13 26 26 O 1.21789 * 120.38469 * 0.02562 * 25 16 15 27 27 C 1.52956 * 109.81702 * 63.59520 * 10 9 8 28 28 C 1.51269 * 120.84916 * 0.02562 * 7 2 1 29 29 H 0.97008 * 120.00001 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.62958 * 351.04667 * 8 7 2 31 31 H 1.09003 * 109.62397 * 111.42051 * 8 7 2 32 32 H 1.09000 * 109.48726 * 185.39513 * 9 8 7 33 33 H 1.09003 * 109.48069 * 65.35037 * 9 8 7 34 34 H 0.97002 * 119.99874 * 264.81912 * 12 10 9 35 35 H 1.09002 * 109.47247 * 299.99956 * 15 13 12 36 36 H 1.08996 * 109.47043 * 59.99914 * 15 13 12 37 37 H 1.07997 * 118.79372 * 359.97438 * 17 16 15 38 38 H 1.07997 * 120.29263 * 180.28973 * 18 17 16 39 39 H 1.07997 * 120.25497 * 359.94772 * 20 19 18 40 40 H 1.08001 * 119.55519 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.55265 * 180.02562 * 22 21 20 42 42 H 1.08007 * 120.24539 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.48335 * 56.38114 * 27 10 9 44 44 H 1.09005 * 109.48079 * 176.40810 * 27 10 9 45 45 H 1.09004 * 109.62594 * 8.95559 * 28 7 2 46 46 H 1.08997 * 109.62459 * 248.39081 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 6 3.5170 -1.2164 0.0000 9 6 3.9912 -2.1305 -1.1346 10 6 3.3404 -3.5066 -0.9841 11 1 3.5739 -3.9122 0.0003 12 7 3.8610 -4.4054 -2.0172 13 6 5.0171 -5.0679 -1.8139 14 8 5.6266 -4.9194 -0.7759 15 6 5.5523 -5.9929 -2.8764 16 7 6.8108 -6.5865 -2.4181 17 6 7.9832 -5.9474 -2.7030 18 6 9.1764 -6.4244 -2.3128 19 6 9.2385 -7.6807 -1.5643 20 6 10.4487 -8.2289 -1.1364 21 6 10.4459 -9.4055 -0.4400 22 6 9.2555 -10.0612 -0.1527 23 6 8.0553 -9.5475 -0.5593 24 6 8.0271 -8.3487 -1.2715 25 6 6.7717 -7.7475 -1.7345 26 8 5.7065 -8.2911 -1.5041 27 6 1.8235 -3.3821 -1.1359 28 6 1.2678 -2.5151 -0.0017 29 1 -0.4850 0.8401 0.0004 30 1 3.8983 -0.2077 -0.1589 31 1 3.8771 -1.5974 0.9557 32 1 5.0753 -2.2342 -1.0890 33 1 3.7072 -1.6970 -2.0935 34 1 3.3737 -4.5239 -2.8475 35 1 4.8266 -6.7829 -3.0695 36 1 5.7290 -5.4300 -3.7928 37 1 7.9495 -5.0220 -3.2588 38 1 10.0825 -5.8881 -2.5530 39 1 11.3802 -7.7277 -1.3542 40 1 11.3817 -9.8303 -0.1081 41 1 9.2783 -10.9893 0.3993 42 1 7.1360 -10.0662 -0.3306 43 1 1.5908 -2.9189 -2.0947 44 1 1.3712 -4.3729 -1.0915 45 1 0.2037 -2.3408 -0.1618 46 1 1.4193 -3.0196 0.9525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182762829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:35 Heat of formation + Delta-G solvation = -37.739840 kcal Electronic energy + Delta-G solvation = -28821.989833 eV Core-core repulsion = 24868.866877 eV Total energy + Delta-G solvation = -3953.122956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.49315 -39.59993 -38.50116 -37.10997 -36.58935 -33.78575 -33.25022 -31.72434 -31.52681 -29.75035 -29.63047 -28.59044 -26.80890 -24.15576 -23.84021 -22.26333 -21.91703 -21.53834 -20.27346 -19.58949 -18.58809 -18.09818 -17.48552 -17.33211 -16.06860 -15.74210 -15.41638 -15.34115 -15.19421 -14.89633 -14.66271 -14.43771 -14.10118 -13.67079 -13.54476 -13.23563 -12.94868 -12.92299 -12.80498 -12.46112 -12.16413 -12.08733 -11.94962 -11.92546 -11.68574 -11.31737 -11.06083 -10.85426 -10.75504 -10.25334 -10.22919 -10.04356 -9.99091 -9.70029 -9.50834 -9.29880 -9.03676 -8.90317 -8.49813 -8.38071 -7.92709 -6.13218 -4.03976 0.52256 0.73220 1.99126 2.29297 2.69398 2.75088 3.24186 3.33850 3.36403 3.44937 3.82262 4.18260 4.30341 4.36082 4.51977 4.62046 4.71902 4.77430 4.84062 4.99912 5.03018 5.09830 5.15034 5.33630 5.56569 5.61821 5.67672 5.70940 5.83797 5.98665 6.15264 6.16557 6.18419 6.31587 6.40727 6.43237 6.61127 6.67525 6.70013 6.84368 6.92503 6.94501 7.04995 7.19001 7.40440 7.61557 7.66753 7.69654 7.75091 7.85121 8.35143 8.41114 8.93204 9.51758 10.96281 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.002307 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.948937 B =12135.608599 C =12549.630096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.489 4.489 8 C -0.014 4.014 9 C -0.112 4.112 10 C 0.155 3.845 11 H 0.078 0.922 12 N -0.719 5.719 13 C 0.494 3.506 14 O -0.530 6.530 15 C 0.073 3.927 16 N -0.503 5.503 17 C 0.129 3.871 18 C -0.210 4.210 19 C 0.010 3.990 20 C -0.128 4.128 21 C -0.084 4.084 22 C -0.143 4.143 23 C -0.047 4.047 24 C -0.151 4.151 25 C 0.552 3.448 26 O -0.523 6.523 27 C -0.114 4.114 28 C 0.012 3.988 29 H 0.264 0.736 30 H 0.031 0.969 31 H 0.019 0.981 32 H 0.035 0.965 33 H 0.051 0.949 34 H 0.395 0.605 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.135 0.865 43 H 0.055 0.945 44 H 0.036 0.964 45 H 0.061 0.939 46 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.019 -15.909 -9.276 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.508 4.508 8 C -0.052 4.052 9 C -0.151 4.151 10 C 0.052 3.948 11 H 0.096 0.904 12 N -0.369 5.369 13 C 0.277 3.723 14 O -0.406 6.406 15 C -0.052 4.052 16 N -0.218 5.218 17 C 0.009 3.991 18 C -0.233 4.233 19 C 0.009 3.991 20 C -0.147 4.147 21 C -0.103 4.103 22 C -0.162 4.162 23 C -0.066 4.066 24 C -0.154 4.154 25 C 0.347 3.653 26 O -0.401 6.401 27 C -0.152 4.152 28 C -0.026 4.026 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.229 0.771 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.174 0.826 38 H 0.166 0.834 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.153 0.847 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 18.575 -16.003 -8.377 25.910 hybrid contribution 0.218 1.063 -0.468 1.182 sum 18.793 -14.940 -8.845 25.585 Atomic orbital electron populations 1.69832 1.06138 1.26965 1.49781 1.24842 0.94720 0.98578 0.94524 0.86656 0.80027 0.83273 0.78400 1.20452 1.21609 1.19177 1.20036 0.89329 0.91466 1.49994 1.19712 0.96611 0.94991 0.93851 1.21896 0.97133 0.95172 1.00870 1.21094 0.94599 0.88833 0.90263 0.90416 1.46356 1.23290 1.45710 1.21553 1.20652 0.82014 0.81098 0.88517 1.90748 1.58134 1.64393 1.27354 1.21803 0.87175 0.98881 0.97378 1.44603 1.06657 1.21158 1.49333 1.21418 0.84512 0.96455 0.96754 1.21391 0.97101 0.98019 1.06832 1.19128 0.92511 0.93337 0.94165 1.20858 0.96962 0.96688 1.00153 1.21053 0.98368 0.94704 0.96143 1.20890 0.92096 1.01089 1.02080 1.20830 0.98966 0.93161 0.93611 1.19813 0.91875 0.98290 1.05459 1.18117 0.89709 0.79802 0.77664 1.90869 1.31334 1.62029 1.55824 1.21926 0.92181 0.98729 1.02397 1.19338 0.98745 0.92775 0.91698 0.92566 0.95068 0.96274 0.94612 0.92984 0.77128 0.85736 0.86315 0.82578 0.83410 0.85059 0.85580 0.85431 0.84673 0.92641 0.94502 0.92004 0.97542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 12.73 55.43 0.71 -24.56 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.01 27.27 -169.99 -4.64 16.38 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.20 6.46 56.52 0.37 -5.83 16 7 C -0.49 -12.78 5.51 -98.93 -0.55 -13.32 16 8 C -0.01 -0.32 5.59 -27.49 -0.15 -0.47 16 9 C -0.11 -2.30 5.50 -26.64 -0.15 -2.44 16 10 C 0.15 3.00 2.35 -67.97 -0.16 2.84 16 11 H 0.08 1.73 7.57 -51.93 -0.39 1.33 16 12 N -0.72 -10.86 5.07 -53.85 -0.27 -11.13 16 13 C 0.49 7.68 7.85 -10.99 -0.09 7.60 16 14 O -0.53 -10.75 16.09 5.55 0.09 -10.66 16 15 C 0.07 0.80 5.76 -5.20 -0.03 0.77 16 16 N -0.50 -6.25 2.10 -119.03 -0.25 -6.50 16 17 C 0.13 1.25 10.16 -16.85 -0.17 1.08 16 18 C -0.21 -1.93 10.03 -37.70 -0.38 -2.31 16 19 C 0.01 0.11 5.89 -104.92 -0.62 -0.51 16 20 C -0.13 -1.10 9.83 -39.63 -0.39 -1.49 16 21 C -0.08 -0.66 9.96 -39.88 -0.40 -1.06 16 22 C -0.14 -1.27 9.96 -39.88 -0.40 -1.67 16 23 C -0.05 -0.54 9.62 -39.67 -0.38 -0.92 16 24 C -0.15 -1.98 5.90 -104.82 -0.62 -2.60 16 25 C 0.55 8.25 7.61 -12.85 -0.10 8.16 16 26 O -0.52 -9.21 16.06 5.11 0.08 -9.13 16 27 C -0.11 -2.30 5.40 -26.65 -0.14 -2.44 16 28 C 0.01 0.30 5.97 -27.50 -0.16 0.14 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.40 4.58 8.60 -40.82 -0.35 4.23 16 35 H 0.12 1.30 7.35 -51.93 -0.38 0.91 16 36 H 0.12 0.76 7.96 -51.93 -0.41 0.35 16 37 H 0.16 1.01 7.97 -52.49 -0.42 0.59 16 38 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 42 H 0.14 1.53 7.80 -52.48 -0.41 1.12 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 1.65 7.07 -51.93 -0.37 1.28 16 46 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -34.87 376.86 -9.96 -44.83 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.38 Total: 1.77 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -4.98 Total: -6.68 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.18 Total: -42.19 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.17 Total: -19.79 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.64 Total: 16.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.87 -9.96 -44.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182762829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.092 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds