Wall clock time and date at job start Sat Apr 11 2020 06:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46908 * 110.99927 * 2 1 4 4 C 1.50697 * 109.47012 * 66.04468 * 3 2 1 5 5 N 1.31072 * 126.66368 * 269.68382 * 4 3 2 6 6 N 1.28838 * 107.99272 * 179.89815 * 5 4 3 7 7 N 1.28738 * 109.39852 * 0.37773 * 6 5 4 8 8 N 1.29027 * 108.80791 * 359.76656 * 7 6 5 9 9 C 1.46499 * 126.43911 * 179.97438 * 8 7 6 10 10 C 1.46899 * 111.00230 * 236.04759 * 2 1 3 11 11 H 1.08994 * 110.88724 * 67.83449 * 10 2 1 12 12 C 1.55159 * 111.00153 * 303.95498 * 10 2 1 13 13 C 1.54322 * 102.94219 * 206.38852 * 12 10 2 14 14 N 1.47027 * 107.27286 * 22.18709 * 13 12 10 15 15 C 1.34775 * 125.64940 * 181.02285 * 14 13 12 16 16 O 1.21276 * 119.99984 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00022 * 0.03083 * 15 14 13 18 18 S 1.80998 * 109.47116 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00013 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00250 * 0.02562 * 19 18 17 21 21 C 1.38798 * 120.00102 * 179.72368 * 19 18 17 22 22 N 1.31634 * 120.00298 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99861 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47644 * 89.99884 * 23 21 19 25 25 H 1.48506 * 109.47143 * 209.99830 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99545 * 23 21 19 27 27 C 1.47419 * 108.70258 * 1.29357 * 14 13 12 28 28 H 1.08994 * 109.46883 * 183.95254 * 1 2 3 29 29 H 1.08996 * 109.46935 * 303.95495 * 1 2 3 30 30 H 1.09004 * 109.46739 * 63.95258 * 1 2 3 31 31 H 1.09001 * 109.46864 * 186.04478 * 3 2 1 32 32 H 1.08994 * 109.46950 * 306.04098 * 3 2 1 33 33 H 1.08994 * 109.47132 * 270.02756 * 9 8 7 34 34 H 1.09000 * 109.46952 * 30.02490 * 9 8 7 35 35 H 1.08997 * 109.46847 * 150.02215 * 9 8 7 36 36 H 1.08992 * 110.72319 * 88.02075 * 12 10 2 37 37 H 1.09007 * 110.71682 * 324.74594 * 12 10 2 38 38 H 1.09003 * 109.88209 * 262.77342 * 13 12 10 39 39 H 1.08996 * 110.01480 * 141.67956 * 13 12 10 40 40 H 1.09001 * 109.47434 * 59.99478 * 17 15 14 41 41 H 1.08999 * 109.47072 * 299.99957 * 17 15 14 42 42 H 0.96995 * 120.00138 * 180.02562 * 22 21 19 43 43 H 1.08997 * 110.37402 * 94.47618 * 27 14 13 44 44 H 1.09001 * 110.36815 * 216.80229 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 7 0.5563 2.7472 1.5441 6 7 0.6157 3.1557 2.7646 7 7 1.7099 2.7411 3.3015 8 7 2.3669 2.0539 2.4292 9 6 3.6641 1.4037 2.6314 10 6 1.9955 -0.7659 -1.1376 11 1 1.7761 -0.2632 -2.0794 12 6 1.4395 -2.2145 -1.1377 13 6 2.5358 -3.0055 -1.8819 14 7 3.7811 -2.2311 -1.7756 15 6 4.9683 -2.5751 -2.3130 16 8 5.9337 -1.8570 -2.1607 17 6 5.0960 -3.8518 -3.1033 18 16 6.7992 -4.0307 -3.6894 19 6 6.6660 -5.5600 -4.5543 20 1 5.7190 -6.0778 -4.5933 21 6 7.7767 -6.0962 -5.1910 22 7 7.6774 -7.2390 -5.8368 23 14 9.4128 -5.1969 -5.1303 24 1 10.1832 -5.6501 -3.9444 25 1 10.1853 -5.4907 -6.3641 26 1 9.1708 -3.7349 -5.0342 27 6 3.5177 -1.0193 -0.9785 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4513 -0.9233 31 1 3.0797 1.3444 -0.1082 32 1 1.5612 1.9273 -0.8309 33 1 4.4629 2.0969 2.3684 34 1 3.7654 1.1124 3.6769 35 1 3.7288 0.5179 1.9995 36 1 0.4940 -2.2646 -1.6776 37 1 1.3228 -2.5828 -0.1184 38 1 2.2610 -3.1234 -2.9301 39 1 2.6676 -3.9844 -1.4210 40 1 4.4197 -3.8197 -3.9575 41 1 4.8390 -4.6995 -2.4682 42 1 8.4537 -7.6138 -6.2814 43 1 3.7685 -1.1917 0.0682 44 1 4.0854 -0.1759 -1.3714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188959363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:47 Heat of formation + Delta-G solvation = 103.808280 kcal Electronic energy + Delta-G solvation = -26882.641957 eV Core-core repulsion = 22999.853347 eV Total energy + Delta-G solvation = -3882.788610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.55993 -40.29674 -38.51907 -36.42670 -35.98256 -33.24331 -32.48905 -31.26584 -30.13968 -29.14334 -28.51438 -27.94843 -25.68268 -24.84088 -23.86567 -23.38583 -22.04351 -20.74302 -19.56659 -17.96092 -17.77769 -17.72168 -17.08541 -16.83917 -16.04455 -15.63836 -15.43127 -15.12346 -14.88730 -14.56363 -14.18199 -14.13732 -14.08011 -13.81458 -13.73442 -13.11807 -12.94333 -12.88360 -12.81932 -12.74545 -12.40622 -12.19926 -12.03864 -11.84134 -11.51372 -11.45851 -11.34570 -11.31193 -11.24220 -11.05547 -10.67296 -10.52274 -9.91572 -9.66193 -9.14254 -9.05290 -8.73587 -8.56775 -6.98467 -6.33733 -4.06273 0.79000 1.58506 1.80481 2.53540 2.81200 3.00492 3.24260 3.28965 3.45575 3.52317 3.57396 3.74619 3.90530 4.20275 4.25009 4.28154 4.43285 4.57663 4.58993 4.62807 4.78612 4.79323 4.85632 4.90551 4.95147 5.02475 5.05244 5.08665 5.13222 5.30800 5.31932 5.44427 5.46324 5.48550 5.53214 5.62113 5.70462 5.75325 5.93742 6.11831 6.19607 6.36018 7.41621 7.89174 8.21921 8.29702 8.36645 9.12189 10.75390 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.002106 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.932760 B =13294.616428 C =14100.497014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.529 5.529 3 C 0.129 3.871 4 C 0.194 3.806 5 N -0.301 5.301 6 N -0.077 5.077 7 N -0.095 5.095 8 N -0.296 5.296 9 C 0.075 3.925 10 C 0.068 3.932 11 H 0.070 0.930 12 C -0.121 4.121 13 C 0.102 3.898 14 N -0.624 5.624 15 C 0.549 3.451 16 O -0.517 6.517 17 C -0.118 4.118 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.116 3.884 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.106 0.894 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 43 H 0.075 0.925 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 14.957 13.685 24.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.255 5.255 3 C -0.002 4.002 4 C -0.084 4.084 5 N -0.151 5.151 6 N -0.071 5.071 7 N -0.081 5.081 8 N -0.097 5.097 9 C -0.066 4.066 10 C -0.041 4.041 11 H 0.087 0.913 12 C -0.159 4.159 13 C -0.022 4.022 14 N -0.362 5.362 15 C 0.338 3.662 16 O -0.391 6.391 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.007 4.007 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.416 16.400 15.015 25.969 hybrid contribution 0.015 -0.969 -1.393 1.697 sum -13.401 15.431 13.622 24.561 Atomic orbital electron populations 1.22503 0.85487 1.03034 1.01797 1.61946 1.09496 1.10945 1.43107 1.20570 1.01963 0.88871 0.88754 1.25768 0.89927 1.00208 0.92531 1.75017 1.18262 1.12716 1.09114 1.78628 1.10306 1.17454 1.00727 1.78912 1.02907 1.09095 1.17187 1.48380 1.18705 1.34390 1.08275 1.22512 0.78335 0.99022 1.06709 1.22914 0.94891 0.94472 0.91852 0.91251 1.22722 0.98032 0.93026 1.02166 1.22038 0.83375 0.95648 1.01145 1.48357 1.09579 1.23752 1.54504 1.20001 0.80707 0.87114 0.78393 1.90705 1.36432 1.52969 1.59041 1.23252 1.04822 0.96806 1.01962 1.84785 1.06808 1.31675 1.68331 1.22290 1.01157 1.05465 1.37987 0.89358 1.24717 0.98829 0.94310 0.93468 1.69934 1.31203 1.17673 1.32746 0.86736 0.83706 0.82845 0.78565 1.19197 1.19915 1.15933 1.22142 0.93522 0.88667 0.96416 0.90413 0.90794 0.94391 0.87604 0.89793 0.88232 0.87308 0.86964 0.89734 0.89291 0.90885 0.90684 0.88486 0.88496 0.91899 0.90697 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.12 60.06 0.55 0.66 16 2 N -0.53 -3.06 4.65 -233.60 -1.09 -4.14 16 3 C 0.13 0.72 5.01 -4.97 -0.02 0.69 16 4 C 0.19 1.58 6.74 -155.43 -1.05 0.53 16 5 N -0.30 -3.32 11.57 32.70 0.38 -2.94 16 6 N -0.08 -0.96 13.43 60.35 0.81 -0.15 16 7 N -0.09 -1.02 13.29 60.35 0.80 -0.22 16 8 N -0.30 -2.28 3.75 -65.03 -0.24 -2.52 16 9 C 0.08 0.25 11.09 59.85 0.66 0.92 16 10 C 0.07 0.42 2.72 -65.44 -0.18 0.24 16 11 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 12 C -0.12 -0.70 5.09 -24.90 -0.13 -0.82 16 13 C 0.10 0.85 6.48 -3.06 -0.02 0.83 16 14 N -0.62 -7.26 3.32 -170.38 -0.57 -7.83 16 15 C 0.55 9.14 7.87 -10.99 -0.09 9.06 16 16 O -0.52 -10.43 16.12 5.56 0.09 -10.34 16 17 C -0.12 -2.17 5.35 36.00 0.19 -1.98 16 18 S -0.14 -3.48 18.55 -107.50 -1.99 -5.48 16 19 C -0.52 -14.60 10.04 30.94 0.31 -14.29 16 20 H 0.09 2.58 8.03 -52.49 -0.42 2.15 16 21 C 0.10 2.73 5.50 -17.43 -0.10 2.64 16 22 N -0.88 -25.98 13.97 55.49 0.78 -25.20 16 23 Si 0.86 21.24 27.74 -169.99 -4.72 16.53 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 27 C 0.12 1.00 5.63 -2.41 -0.01 0.99 16 28 H 0.08 0.39 6.99 -51.93 -0.36 0.03 16 29 H 0.07 0.57 6.56 -51.93 -0.34 0.23 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.11 0.42 6.62 -51.93 -0.34 0.08 16 32 H 0.08 0.44 8.12 -51.93 -0.42 0.01 16 33 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.11 0.26 7.75 -51.93 -0.40 -0.14 16 36 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 37 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.67 8.14 -51.91 -0.42 1.24 16 41 H 0.10 1.67 8.14 -51.92 -0.42 1.24 16 42 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.71 7.71 -51.93 -0.40 0.30 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -36.21 377.54 -6.43 -42.65 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -6.49 Total: -5.50 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 0.12 Total: -0.54 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.87 Total: -43.01 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.72 Total: 16.53 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.21 -6.43 -42.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188959363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.455 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds